Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.17.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.16.1 and Xcc-8004.17.1 are separated by 222 nucleotidesXcc-8004.17.1 and Xcc-8004.18.1 are separated by 7 nucleotidesXcc-8004.18.1 and Xcc-8004.19.1 are separated by 74 nucleotides Xcc-8004.16.1: Xcc-8004.16.1 - hypothetical protein, at 13,573 to 13,890 Xcc-8004.16.1 Xcc-8004.17.1: Xcc-8004.17.1 - Pyridoxine 5'-phosphate synthase (EC 2.6.99.2), at 14,113 to 14,883 Xcc-8004.17.1 Xcc-8004.18.1: Xcc-8004.18.1 - FIG01209949: hypothetical protein, at 14,891 to 15,160 Xcc-8004.18.1 Xcc-8004.19.1: Xcc-8004.19.1 - Cardiolipin synthetase (EC 2.7.8.-), at 15,235 to 16,695 Xcc-8004.19.1 Position (kb) 14 15Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 13.205 kb on - strandat 13.205 kb on - strandat 13.210 kb on + strandat 13.211 kb on - strandat 13.258 kb on - strandat 13.258 kb on - strandat 13.261 kb on + strandat 13.262 kb on - strandat 13.262 kb on - strandat 13.262 kb on - strandat 13.262 kb on - strandat 13.317 kb on + strandat 13.317 kb on + strandat 13.317 kb on + strandat 13.318 kb on - strandat 13.334 kb on + strandat 13.335 kb on - strandat 13.335 kb on - strandat 13.375 kb on + strandat 13.376 kb on - strandat 13.376 kb on - strandat 13.376 kb on - strandat 13.620 kb on + strand, within Xcc-8004.16.1at 13.621 kb on - strand, within Xcc-8004.16.1at 13.621 kb on - strand, within Xcc-8004.16.1at 13.621 kb on - strand, within Xcc-8004.16.1at 13.621 kb on - strand, within Xcc-8004.16.1at 13.621 kb on - strand, within Xcc-8004.16.1at 13.621 kb on - strand, within Xcc-8004.16.1at 13.736 kb on + strand, within Xcc-8004.16.1at 13.740 kb on + strand, within Xcc-8004.16.1at 13.740 kb on + strand, within Xcc-8004.16.1at 13.740 kb on + strand, within Xcc-8004.16.1at 13.740 kb on + strand, within Xcc-8004.16.1at 13.740 kb on + strand, within Xcc-8004.16.1at 13.741 kb on - strand, within Xcc-8004.16.1at 13.741 kb on - strand, within Xcc-8004.16.1at 13.741 kb on - strand, within Xcc-8004.16.1at 13.776 kb on + strand, within Xcc-8004.16.1at 13.797 kb on + strand, within Xcc-8004.16.1at 13.797 kb on + strand, within Xcc-8004.16.1at 13.797 kb on + strand, within Xcc-8004.16.1at 13.797 kb on + strand, within Xcc-8004.16.1at 13.797 kb on + strand, within Xcc-8004.16.1at 13.798 kb on - strand, within Xcc-8004.16.1at 13.798 kb on - strand, within Xcc-8004.16.1at 13.798 kb on - strand, within Xcc-8004.16.1at 13.798 kb on - strand, within Xcc-8004.16.1at 13.820 kb on + strand, within Xcc-8004.16.1at 13.820 kb on + strand, within Xcc-8004.16.1at 13.821 kb on - strand, within Xcc-8004.16.1at 13.821 kb on - strand, within Xcc-8004.16.1at 13.880 kb on + strandat 13.895 kb on + strandat 13.895 kb on + strandat 13.967 kb on - strandat 13.967 kb on - strandat 13.991 kb on + strandat 14.101 kb on + strandat 14.143 kb on - strandat 14.153 kb on + strandat 14.183 kb on + strandat 14.183 kb on + strandat 14.183 kb on + strandat 14.393 kb on + strand, within Xcc-8004.17.1at 14.393 kb on + strand, within Xcc-8004.17.1at 14.394 kb on - strand, within Xcc-8004.17.1at 14.394 kb on - strand, within Xcc-8004.17.1at 14.394 kb on - strand, within Xcc-8004.17.1at 14.394 kb on - strand, within Xcc-8004.17.1at 14.806 kb on + strand, within Xcc-8004.17.1at 14.806 kb on + strand, within Xcc-8004.17.1at 14.806 kb on + strand, within Xcc-8004.17.1at 14.806 kb on + strand, within Xcc-8004.17.1at 14.806 kb on + strand, within Xcc-8004.17.1at 14.807 kb on - strandat 14.807 kb on - strandat 14.807 kb on - strandat 14.807 kb on - strandat 14.842 kb on + strandat 14.843 kb on - strandat 15.139 kb on + strandat 15.190 kb on + strandat 15.190 kb on + strandat 15.191 kb on - strandat 15.191 kb on - strandat 15.191 kb on - strandat 15.251 kb on - strandat 15.506 kb on + strand, within Xcc-8004.19.1at 15.506 kb on + strand, within Xcc-8004.19.1at 15.506 kb on + strand, within Xcc-8004.19.1at 15.506 kb on + strand, within Xcc-8004.19.1at 15.506 kb on + strand, within Xcc-8004.19.1at 15.506 kb on + strand, within Xcc-8004.19.1at 15.506 kb on + strand, within Xcc-8004.19.1at 15.507 kb on - strand, within Xcc-8004.19.1at 15.507 kb on - strand, within Xcc-8004.19.1at 15.507 kb on - strand, within Xcc-8004.19.1at 15.507 kb on - strand, within Xcc-8004.19.1at 15.510 kb on + strand, within Xcc-8004.19.1at 15.510 kb on + strand, within Xcc-8004.19.1at 15.510 kb on + strand, within Xcc-8004.19.1at 15.510 kb on + strand, within Xcc-8004.19.1at 15.510 kb on + strand, within Xcc-8004.19.1at 15.511 kb on - strand, within Xcc-8004.19.1at 15.511 kb on - strand, within Xcc-8004.19.1at 15.542 kb on + strand, within Xcc-8004.19.1at 15.542 kb on + strand, within Xcc-8004.19.1at 15.542 kb on + strand, within Xcc-8004.19.1at 15.557 kb on + strand, within Xcc-8004.19.1at 15.557 kb on + strand, within Xcc-8004.19.1at 15.557 kb on + strand, within Xcc-8004.19.1at 15.558 kb on - strand, within Xcc-8004.19.1at 15.558 kb on - strand, within Xcc-8004.19.1at 15.558 kb on - strand, within Xcc-8004.19.1at 15.665 kb on + strand, within Xcc-8004.19.1at 15.666 kb on - strand, within Xcc-8004.19.1at 15.666 kb on - strand, within Xcc-8004.19.1at 15.858 kb on - strand, within Xcc-8004.19.1

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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13,205 - -0.9
13,205 - -1.5
13,210 + -0.3
13,211 - -0.6
13,258 - -0.1
13,258 - -0.2
13,261 + -0.2
13,262 - +1.1
13,262 - -0.5
13,262 - -0.0
13,262 - -0.5
13,317 + +0.2
13,317 + -1.6
13,317 + -0.7
13,318 - +0.1
13,334 + -0.6
13,335 - -0.1
13,335 - -0.1
13,375 + +0.4
13,376 - -1.3
13,376 - -0.5
13,376 - -0.9
13,620 + Xcc-8004.16.1 0.15 -0.4
13,621 - Xcc-8004.16.1 0.15 +0.4
13,621 - Xcc-8004.16.1 0.15 +0.1
13,621 - Xcc-8004.16.1 0.15 +0.5
13,621 - Xcc-8004.16.1 0.15 +0.6
13,621 - Xcc-8004.16.1 0.15 +0.7
13,621 - Xcc-8004.16.1 0.15 +1.2
13,736 + Xcc-8004.16.1 0.51 +0.0
13,740 + Xcc-8004.16.1 0.53 -0.6
13,740 + Xcc-8004.16.1 0.53 +0.2
13,740 + Xcc-8004.16.1 0.53 -0.6
13,740 + Xcc-8004.16.1 0.53 +0.9
13,740 + Xcc-8004.16.1 0.53 +0.4
13,741 - Xcc-8004.16.1 0.53 -0.6
13,741 - Xcc-8004.16.1 0.53 +0.4
13,741 - Xcc-8004.16.1 0.53 -0.7
13,776 + Xcc-8004.16.1 0.64 -0.2
13,797 + Xcc-8004.16.1 0.70 +0.5
13,797 + Xcc-8004.16.1 0.70 -0.0
13,797 + Xcc-8004.16.1 0.70 +0.0
13,797 + Xcc-8004.16.1 0.70 +0.7
13,797 + Xcc-8004.16.1 0.70 -0.3
13,798 - Xcc-8004.16.1 0.71 +0.3
13,798 - Xcc-8004.16.1 0.71 +0.7
13,798 - Xcc-8004.16.1 0.71 +0.6
13,798 - Xcc-8004.16.1 0.71 +0.2
13,820 + Xcc-8004.16.1 0.78 -0.1
13,820 + Xcc-8004.16.1 0.78 +0.1
13,821 - Xcc-8004.16.1 0.78 +0.4
13,821 - Xcc-8004.16.1 0.78 +1.0
13,880 + -0.6
13,895 + -0.9
13,895 + +0.4
13,967 - +0.4
13,967 - +0.4
13,991 + -0.7
14,101 + -2.2
14,143 - +0.5
14,153 + -0.9
14,183 + +0.6
14,183 + -0.8
14,183 + -0.2
14,393 + Xcc-8004.17.1 0.36 +0.1
14,393 + Xcc-8004.17.1 0.36 -0.1
14,394 - Xcc-8004.17.1 0.36 -0.5
14,394 - Xcc-8004.17.1 0.36 +1.3
14,394 - Xcc-8004.17.1 0.36 -0.1
14,394 - Xcc-8004.17.1 0.36 +1.1
14,806 + Xcc-8004.17.1 0.90 +1.1
14,806 + Xcc-8004.17.1 0.90 +1.8
14,806 + Xcc-8004.17.1 0.90 -0.6
14,806 + Xcc-8004.17.1 0.90 -0.3
14,806 + Xcc-8004.17.1 0.90 -0.4
14,807 - -0.4
14,807 - +0.6
14,807 - -0.7
14,807 - +0.5
14,842 + +0.2
14,843 - +0.2
15,139 + -0.4
15,190 + +1.0
15,190 + -0.7
15,191 - -0.2
15,191 - +1.3
15,191 - +0.2
15,251 - +0.7
15,506 + Xcc-8004.19.1 0.19 -0.4
15,506 + Xcc-8004.19.1 0.19 -0.1
15,506 + Xcc-8004.19.1 0.19 -0.1
15,506 + Xcc-8004.19.1 0.19 -0.3
15,506 + Xcc-8004.19.1 0.19 -0.9
15,506 + Xcc-8004.19.1 0.19 +0.1
15,506 + Xcc-8004.19.1 0.19 +0.0
15,507 - Xcc-8004.19.1 0.19 -0.6
15,507 - Xcc-8004.19.1 0.19 -1.4
15,507 - Xcc-8004.19.1 0.19 +0.7
15,507 - Xcc-8004.19.1 0.19 +1.5
15,510 + Xcc-8004.19.1 0.19 +0.2
15,510 + Xcc-8004.19.1 0.19 +0.1
15,510 + Xcc-8004.19.1 0.19 -1.0
15,510 + Xcc-8004.19.1 0.19 -0.5
15,510 + Xcc-8004.19.1 0.19 +0.5
15,511 - Xcc-8004.19.1 0.19 -0.8
15,511 - Xcc-8004.19.1 0.19 -0.4
15,542 + Xcc-8004.19.1 0.21 -0.3
15,542 + Xcc-8004.19.1 0.21 +0.4
15,542 + Xcc-8004.19.1 0.21 -0.4
15,557 + Xcc-8004.19.1 0.22 -1.1
15,557 + Xcc-8004.19.1 0.22 -1.5
15,557 + Xcc-8004.19.1 0.22 -3.7
15,558 - Xcc-8004.19.1 0.22 -0.1
15,558 - Xcc-8004.19.1 0.22 +0.5
15,558 - Xcc-8004.19.1 0.22 -0.8
15,665 + Xcc-8004.19.1 0.29 -0.1
15,666 - Xcc-8004.19.1 0.30 -0.7
15,666 - Xcc-8004.19.1 0.30 -0.0
15,858 - Xcc-8004.19.1 0.43 +0.3

Or see this region's nucleotide sequence