Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1323.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1321.1 and Xcc-8004.1322.1 are separated by 0 nucleotidesXcc-8004.1322.1 and Xcc-8004.1323.1 overlap by 4 nucleotidesXcc-8004.1323.1 and Xcc-8004.1324.1 are separated by 10 nucleotides Xcc-8004.1321.1: Xcc-8004.1321.1 - putative membrane protein, at 1,254,415 to 1,255,953 Xcc-8004.1321.1 Xcc-8004.1322.1: Xcc-8004.1322.1 - hypothetical protein, at 1,255,954 to 1,256,301 Xcc-8004.1322.1 Xcc-8004.1323.1: Xcc-8004.1323.1 - FIG01212208: hypothetical protein, at 1,256,298 to 1,257,698 Xcc-8004.1323.1 Xcc-8004.1324.1: Xcc-8004.1324.1 - FIG00956406: hypothetical protein, at 1,257,709 to 1,258,650 Xcc-8004.1324.1 Position (kb) 1256 1257 1258Strain fitness (log2 ratio) -2 -1 0 1at 1255.396 kb on - strand, within Xcc-8004.1321.1at 1255.450 kb on - strand, within Xcc-8004.1321.1at 1255.523 kb on - strand, within Xcc-8004.1321.1at 1255.655 kb on + strand, within Xcc-8004.1321.1at 1255.904 kb on + strandat 1255.904 kb on + strandat 1255.904 kb on + strandat 1255.905 kb on - strandat 1255.907 kb on + strandat 1255.955 kb on + strandat 1255.956 kb on - strandat 1256.097 kb on + strand, within Xcc-8004.1322.1at 1256.097 kb on + strand, within Xcc-8004.1322.1at 1256.106 kb on - strand, within Xcc-8004.1322.1at 1256.186 kb on + strand, within Xcc-8004.1322.1at 1256.187 kb on - strand, within Xcc-8004.1322.1at 1256.187 kb on - strand, within Xcc-8004.1322.1at 1256.190 kb on + strand, within Xcc-8004.1322.1at 1256.191 kb on - strand, within Xcc-8004.1322.1at 1256.191 kb on - strand, within Xcc-8004.1322.1at 1256.217 kb on + strand, within Xcc-8004.1322.1at 1256.218 kb on - strand, within Xcc-8004.1322.1at 1256.227 kb on + strand, within Xcc-8004.1322.1at 1256.228 kb on - strand, within Xcc-8004.1322.1at 1256.228 kb on - strand, within Xcc-8004.1322.1at 1256.239 kb on + strand, within Xcc-8004.1322.1at 1256.366 kb on - strandat 1256.366 kb on - strandat 1256.393 kb on + strandat 1256.393 kb on + strandat 1256.393 kb on + strandat 1256.446 kb on - strand, within Xcc-8004.1323.1at 1256.489 kb on + strand, within Xcc-8004.1323.1at 1256.508 kb on - strand, within Xcc-8004.1323.1at 1256.593 kb on - strand, within Xcc-8004.1323.1at 1256.673 kb on - strand, within Xcc-8004.1323.1at 1256.782 kb on + strand, within Xcc-8004.1323.1at 1256.942 kb on + strand, within Xcc-8004.1323.1at 1256.952 kb on + strand, within Xcc-8004.1323.1at 1256.953 kb on - strand, within Xcc-8004.1323.1at 1256.996 kb on - strand, within Xcc-8004.1323.1at 1257.169 kb on - strand, within Xcc-8004.1323.1at 1257.293 kb on - strand, within Xcc-8004.1323.1at 1257.293 kb on - strand, within Xcc-8004.1323.1at 1257.431 kb on + strand, within Xcc-8004.1323.1at 1257.431 kb on + strand, within Xcc-8004.1323.1at 1257.431 kb on + strand, within Xcc-8004.1323.1at 1257.492 kb on - strand, within Xcc-8004.1323.1at 1257.492 kb on - strand, within Xcc-8004.1323.1at 1257.539 kb on - strand, within Xcc-8004.1323.1at 1257.711 kb on - strandat 1257.788 kb on + strandat 1257.844 kb on - strand, within Xcc-8004.1324.1at 1257.844 kb on - strand, within Xcc-8004.1324.1at 1257.876 kb on + strand, within Xcc-8004.1324.1at 1257.876 kb on + strand, within Xcc-8004.1324.1at 1257.877 kb on - strand, within Xcc-8004.1324.1at 1257.899 kb on - strand, within Xcc-8004.1324.1at 1257.953 kb on + strand, within Xcc-8004.1324.1at 1258.041 kb on + strand, within Xcc-8004.1324.1at 1258.041 kb on + strand, within Xcc-8004.1324.1at 1258.042 kb on - strand, within Xcc-8004.1324.1at 1258.042 kb on - strand, within Xcc-8004.1324.1at 1258.042 kb on - strand, within Xcc-8004.1324.1at 1258.096 kb on + strand, within Xcc-8004.1324.1at 1258.151 kb on + strand, within Xcc-8004.1324.1at 1258.168 kb on - strand, within Xcc-8004.1324.1at 1258.252 kb on + strand, within Xcc-8004.1324.1at 1258.252 kb on + strand, within Xcc-8004.1324.1at 1258.365 kb on + strand, within Xcc-8004.1324.1at 1258.365 kb on + strand, within Xcc-8004.1324.1at 1258.413 kb on - strand, within Xcc-8004.1324.1at 1258.587 kb on + strandat 1258.588 kb on - strandat 1258.624 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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1,255,396 - Xcc-8004.1321.1 0.64 +1.5
1,255,450 - Xcc-8004.1321.1 0.67 +1.6
1,255,523 - Xcc-8004.1321.1 0.72 -0.0
1,255,655 + Xcc-8004.1321.1 0.81 -0.6
1,255,904 + +0.6
1,255,904 + +0.5
1,255,904 + +0.8
1,255,905 - -0.0
1,255,907 + -0.2
1,255,955 + +0.4
1,255,956 - -0.6
1,256,097 + Xcc-8004.1322.1 0.41 -0.0
1,256,097 + Xcc-8004.1322.1 0.41 -0.4
1,256,106 - Xcc-8004.1322.1 0.44 -0.2
1,256,186 + Xcc-8004.1322.1 0.67 -0.5
1,256,187 - Xcc-8004.1322.1 0.67 +0.8
1,256,187 - Xcc-8004.1322.1 0.67 +0.2
1,256,190 + Xcc-8004.1322.1 0.68 +0.2
1,256,191 - Xcc-8004.1322.1 0.68 -0.2
1,256,191 - Xcc-8004.1322.1 0.68 -0.0
1,256,217 + Xcc-8004.1322.1 0.76 -1.0
1,256,218 - Xcc-8004.1322.1 0.76 +0.4
1,256,227 + Xcc-8004.1322.1 0.78 +0.2
1,256,228 - Xcc-8004.1322.1 0.79 -0.2
1,256,228 - Xcc-8004.1322.1 0.79 -0.2
1,256,239 + Xcc-8004.1322.1 0.82 -0.2
1,256,366 - -1.3
1,256,366 - -0.4
1,256,393 + -0.2
1,256,393 + -0.3
1,256,393 + -0.9
1,256,446 - Xcc-8004.1323.1 0.11 +0.6
1,256,489 + Xcc-8004.1323.1 0.14 +1.2
1,256,508 - Xcc-8004.1323.1 0.15 +0.8
1,256,593 - Xcc-8004.1323.1 0.21 -0.8
1,256,673 - Xcc-8004.1323.1 0.27 +0.1
1,256,782 + Xcc-8004.1323.1 0.35 -1.3
1,256,942 + Xcc-8004.1323.1 0.46 -1.2
1,256,952 + Xcc-8004.1323.1 0.47 -0.1
1,256,953 - Xcc-8004.1323.1 0.47 -1.7
1,256,996 - Xcc-8004.1323.1 0.50 -0.9
1,257,169 - Xcc-8004.1323.1 0.62 -0.3
1,257,293 - Xcc-8004.1323.1 0.71 -0.9
1,257,293 - Xcc-8004.1323.1 0.71 -0.1
1,257,431 + Xcc-8004.1323.1 0.81 -2.1
1,257,431 + Xcc-8004.1323.1 0.81 -1.3
1,257,431 + Xcc-8004.1323.1 0.81 -1.3
1,257,492 - Xcc-8004.1323.1 0.85 -0.0
1,257,492 - Xcc-8004.1323.1 0.85 -1.1
1,257,539 - Xcc-8004.1323.1 0.89 -0.6
1,257,711 - -0.8
1,257,788 + -0.0
1,257,844 - Xcc-8004.1324.1 0.14 +1.1
1,257,844 - Xcc-8004.1324.1 0.14 +0.2
1,257,876 + Xcc-8004.1324.1 0.18 -0.5
1,257,876 + Xcc-8004.1324.1 0.18 -1.0
1,257,877 - Xcc-8004.1324.1 0.18 -0.4
1,257,899 - Xcc-8004.1324.1 0.20 +0.4
1,257,953 + Xcc-8004.1324.1 0.26 +0.5
1,258,041 + Xcc-8004.1324.1 0.35 -0.1
1,258,041 + Xcc-8004.1324.1 0.35 +0.1
1,258,042 - Xcc-8004.1324.1 0.35 -0.4
1,258,042 - Xcc-8004.1324.1 0.35 -1.4
1,258,042 - Xcc-8004.1324.1 0.35 +0.4
1,258,096 + Xcc-8004.1324.1 0.41 +1.2
1,258,151 + Xcc-8004.1324.1 0.47 +0.3
1,258,168 - Xcc-8004.1324.1 0.49 -1.0
1,258,252 + Xcc-8004.1324.1 0.58 +0.0
1,258,252 + Xcc-8004.1324.1 0.58 -0.0
1,258,365 + Xcc-8004.1324.1 0.70 -0.5
1,258,365 + Xcc-8004.1324.1 0.70 +0.4
1,258,413 - Xcc-8004.1324.1 0.75 +0.8
1,258,587 + -0.6
1,258,588 - -0.9
1,258,624 + +0.2

Or see this region's nucleotide sequence