Experiment: MOKA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1125.1 and Xcc-8004.1126.1 are separated by 84 nucleotides Xcc-8004.1126.1 and Xcc-8004.1127.1 are separated by 69 nucleotides
Xcc-8004.1125.1: Xcc-8004.1125.1 - Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57), at 1,070,291 to 1,071,490
Xcc-8004.1125.1
Xcc-8004.1126.1: Xcc-8004.1126.1 - Electron transfer protein azurin I, at 1,071,575 to 1,072,102
Xcc-8004.1126.1
Xcc-8004.1127.1: Xcc-8004.1127.1 - transcriptional regulator, at 1,072,172 to 1,074,937
Xcc-8004.1127.1
Position (kb) 1071
1072
1073 Strain fitness (log2 ratio) -1
0
1 at 1070.611 kb on + strand, within Xcc-8004.1125.1 at 1070.684 kb on + strand, within Xcc-8004.1125.1 at 1070.808 kb on - strand, within Xcc-8004.1125.1 at 1070.808 kb on - strand, within Xcc-8004.1125.1 at 1070.915 kb on + strand, within Xcc-8004.1125.1 at 1070.915 kb on + strand, within Xcc-8004.1125.1 at 1070.915 kb on + strand, within Xcc-8004.1125.1 at 1070.915 kb on + strand, within Xcc-8004.1125.1 at 1070.916 kb on - strand, within Xcc-8004.1125.1 at 1071.074 kb on + strand, within Xcc-8004.1125.1 at 1071.075 kb on - strand, within Xcc-8004.1125.1 at 1071.255 kb on + strand, within Xcc-8004.1125.1 at 1071.256 kb on - strand, within Xcc-8004.1125.1 at 1071.303 kb on + strand, within Xcc-8004.1125.1 at 1071.304 kb on - strand, within Xcc-8004.1125.1 at 1071.304 kb on - strand, within Xcc-8004.1125.1 at 1071.304 kb on - strand, within Xcc-8004.1125.1 at 1071.304 kb on - strand, within Xcc-8004.1125.1 at 1071.453 kb on + strand at 1071.483 kb on - strand at 1071.609 kb on + strand at 1071.609 kb on + strand at 1071.610 kb on - strand at 1071.929 kb on + strand, within Xcc-8004.1126.1 at 1071.929 kb on + strand, within Xcc-8004.1126.1 at 1071.930 kb on - strand, within Xcc-8004.1126.1 at 1072.037 kb on + strand, within Xcc-8004.1126.1 at 1072.040 kb on - strand, within Xcc-8004.1126.1 at 1072.085 kb on - strand at 1072.590 kb on + strand, within Xcc-8004.1127.1 at 1072.590 kb on + strand, within Xcc-8004.1127.1 at 1072.591 kb on - strand, within Xcc-8004.1127.1 at 1072.629 kb on - strand, within Xcc-8004.1127.1 at 1072.810 kb on + strand, within Xcc-8004.1127.1
Per-strain Table
Position Strand Gene LocusTag Fraction MOKA remove 1,070,611 + Xcc-8004.1125.1 0.27 +0.6 1,070,684 + Xcc-8004.1125.1 0.33 -0.5 1,070,808 - Xcc-8004.1125.1 0.43 -0.9 1,070,808 - Xcc-8004.1125.1 0.43 +0.6 1,070,915 + Xcc-8004.1125.1 0.52 +0.1 1,070,915 + Xcc-8004.1125.1 0.52 +0.7 1,070,915 + Xcc-8004.1125.1 0.52 +0.9 1,070,915 + Xcc-8004.1125.1 0.52 -1.5 1,070,916 - Xcc-8004.1125.1 0.52 -1.5 1,071,074 + Xcc-8004.1125.1 0.65 -0.1 1,071,075 - Xcc-8004.1125.1 0.65 +0.2 1,071,255 + Xcc-8004.1125.1 0.80 -0.4 1,071,256 - Xcc-8004.1125.1 0.80 +0.4 1,071,303 + Xcc-8004.1125.1 0.84 +0.4 1,071,304 - Xcc-8004.1125.1 0.84 -0.0 1,071,304 - Xcc-8004.1125.1 0.84 +0.6 1,071,304 - Xcc-8004.1125.1 0.84 +0.1 1,071,304 - Xcc-8004.1125.1 0.84 -0.2 1,071,453 + +0.6 1,071,483 - +0.2 1,071,609 + +1.0 1,071,609 + -0.0 1,071,610 - +0.5 1,071,929 + Xcc-8004.1126.1 0.67 +0.7 1,071,929 + Xcc-8004.1126.1 0.67 +0.4 1,071,930 - Xcc-8004.1126.1 0.67 +1.1 1,072,037 + Xcc-8004.1126.1 0.88 -0.6 1,072,040 - Xcc-8004.1126.1 0.88 -0.5 1,072,085 - -0.3 1,072,590 + Xcc-8004.1127.1 0.15 -0.1 1,072,590 + Xcc-8004.1127.1 0.15 +0.1 1,072,591 - Xcc-8004.1127.1 0.15 +0.5 1,072,629 - Xcc-8004.1127.1 0.17 -0.1 1,072,810 + Xcc-8004.1127.1 0.23 +0.4
Or see this region's nucleotide sequence