Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36530

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36520 and RR42_RS36525 are separated by 146 nucleotidesRR42_RS36525 and RR42_RS36530 are separated by 36 nucleotidesRR42_RS36530 and RR42_RS36535 are separated by 277 nucleotidesRR42_RS36535 and RR42_RS36540 are separated by 84 nucleotides RR42_RS36520: RR42_RS36520 - AraC family transcriptional regulator, at 3,650,678 to 3,651,814 _RS36520 RR42_RS36525: RR42_RS36525 - universal stress protein UspA, at 3,651,961 to 3,652,395 _RS36525 RR42_RS36530: RR42_RS36530 - hypothetical protein, at 3,652,432 to 3,652,650 _RS36530 RR42_RS36535: RR42_RS36535 - hypothetical protein, at 3,652,928 to 3,653,176 _RS36535 RR42_RS36540: RR42_RS36540 - CoA-transferase, at 3,653,261 to 3,654,484 _RS36540 Position (kb) 3652 3653Strain fitness (log2 ratio) -1 0 1 2at 3651.985 kb on - strandat 3651.985 kb on - strandat 3651.990 kb on + strandat 3651.991 kb on - strandat 3651.991 kb on - strandat 3651.991 kb on - strandat 3652.289 kb on + strand, within RR42_RS36525at 3652.289 kb on + strand, within RR42_RS36525at 3652.289 kb on + strand, within RR42_RS36525at 3652.289 kb on + strand, within RR42_RS36525at 3652.290 kb on - strand, within RR42_RS36525at 3652.290 kb on - strand, within RR42_RS36525at 3652.290 kb on - strand, within RR42_RS36525at 3652.463 kb on + strand, within RR42_RS36530at 3652.464 kb on - strand, within RR42_RS36530at 3652.624 kb on + strand, within RR42_RS36530at 3652.625 kb on - strand, within RR42_RS36530at 3652.728 kb on + strandat 3652.728 kb on + strandat 3652.729 kb on - strandat 3652.859 kb on + strandat 3652.866 kb on + strandat 3652.893 kb on - strandat 3652.895 kb on - strandat 3653.244 kb on + strandat 3653.443 kb on + strand, within RR42_RS36540at 3653.464 kb on - strand, within RR42_RS36540at 3653.496 kb on + strand, within RR42_RS36540at 3653.497 kb on - strand, within RR42_RS36540at 3653.573 kb on - strand, within RR42_RS36540

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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3,651,985 - +1.2
3,651,985 - -0.8
3,651,990 + -0.6
3,651,991 - -0.2
3,651,991 - +0.9
3,651,991 - -0.3
3,652,289 + RR42_RS36525 0.75 -0.3
3,652,289 + RR42_RS36525 0.75 +2.3
3,652,289 + RR42_RS36525 0.75 -0.5
3,652,289 + RR42_RS36525 0.75 -0.5
3,652,290 - RR42_RS36525 0.76 +0.1
3,652,290 - RR42_RS36525 0.76 +0.2
3,652,290 - RR42_RS36525 0.76 +0.3
3,652,463 + RR42_RS36530 0.14 -0.1
3,652,464 - RR42_RS36530 0.15 -0.4
3,652,624 + RR42_RS36530 0.88 +0.0
3,652,625 - RR42_RS36530 0.88 -0.8
3,652,728 + +1.1
3,652,728 + +0.1
3,652,729 - +0.3
3,652,859 + +0.1
3,652,866 + -0.8
3,652,893 - -1.0
3,652,895 - -1.6
3,653,244 + -0.0
3,653,443 + RR42_RS36540 0.15 +1.0
3,653,464 - RR42_RS36540 0.17 -0.5
3,653,496 + RR42_RS36540 0.19 -0.2
3,653,497 - RR42_RS36540 0.19 +0.3
3,653,573 - RR42_RS36540 0.25 -1.2

Or see this region's nucleotide sequence