Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36285

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36280 and RR42_RS36285 are separated by 24 nucleotidesRR42_RS36285 and RR42_RS36290 are separated by 34 nucleotides RR42_RS36280: RR42_RS36280 - hypothetical protein, at 3,591,345 to 3,592,685 _RS36280 RR42_RS36285: RR42_RS36285 - hypothetical protein, at 3,592,710 to 3,594,041 _RS36285 RR42_RS36290: RR42_RS36290 - ABC transporter substrate-binding protein, at 3,594,076 to 3,595,032 _RS36290 Position (kb) 3592 3593 3594 3595Strain fitness (log2 ratio) -2 -1 0 1at 3591.752 kb on - strand, within RR42_RS36280at 3591.752 kb on - strand, within RR42_RS36280at 3591.752 kb on - strand, within RR42_RS36280at 3591.784 kb on + strand, within RR42_RS36280at 3591.784 kb on + strand, within RR42_RS36280at 3591.784 kb on + strand, within RR42_RS36280at 3591.785 kb on - strand, within RR42_RS36280at 3592.339 kb on + strand, within RR42_RS36280at 3592.340 kb on - strand, within RR42_RS36280at 3592.340 kb on - strand, within RR42_RS36280at 3592.357 kb on + strand, within RR42_RS36280at 3592.357 kb on + strand, within RR42_RS36280at 3592.381 kb on + strand, within RR42_RS36280at 3592.381 kb on + strand, within RR42_RS36280at 3592.381 kb on + strand, within RR42_RS36280at 3592.382 kb on - strand, within RR42_RS36280at 3592.382 kb on - strand, within RR42_RS36280at 3592.382 kb on - strand, within RR42_RS36280at 3592.453 kb on + strand, within RR42_RS36280at 3592.742 kb on - strandat 3592.943 kb on - strand, within RR42_RS36285at 3592.943 kb on - strand, within RR42_RS36285at 3593.075 kb on - strand, within RR42_RS36285at 3593.149 kb on + strand, within RR42_RS36285at 3593.149 kb on + strand, within RR42_RS36285at 3593.150 kb on - strand, within RR42_RS36285at 3593.170 kb on + strand, within RR42_RS36285at 3593.234 kb on - strand, within RR42_RS36285at 3593.689 kb on + strand, within RR42_RS36285at 3593.768 kb on - strand, within RR42_RS36285at 3593.768 kb on - strand, within RR42_RS36285at 3593.768 kb on - strand, within RR42_RS36285at 3593.929 kb on + strandat 3593.930 kb on - strandat 3593.984 kb on - strandat 3593.984 kb on - strandat 3594.077 kb on + strandat 3594.078 kb on - strandat 3594.494 kb on + strand, within RR42_RS36290at 3594.581 kb on + strand, within RR42_RS36290at 3594.582 kb on - strand, within RR42_RS36290at 3594.582 kb on - strand, within RR42_RS36290at 3594.969 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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3,591,752 - RR42_RS36280 0.30 -0.5
3,591,752 - RR42_RS36280 0.30 +1.0
3,591,752 - RR42_RS36280 0.30 +0.7
3,591,784 + RR42_RS36280 0.33 -0.0
3,591,784 + RR42_RS36280 0.33 +0.1
3,591,784 + RR42_RS36280 0.33 -1.2
3,591,785 - RR42_RS36280 0.33 -2.1
3,592,339 + RR42_RS36280 0.74 -0.9
3,592,340 - RR42_RS36280 0.74 +0.3
3,592,340 - RR42_RS36280 0.74 -0.1
3,592,357 + RR42_RS36280 0.75 -0.2
3,592,357 + RR42_RS36280 0.75 -0.5
3,592,381 + RR42_RS36280 0.77 +0.7
3,592,381 + RR42_RS36280 0.77 +0.8
3,592,381 + RR42_RS36280 0.77 +0.8
3,592,382 - RR42_RS36280 0.77 +0.3
3,592,382 - RR42_RS36280 0.77 +0.6
3,592,382 - RR42_RS36280 0.77 +0.3
3,592,453 + RR42_RS36280 0.83 +0.1
3,592,742 - -1.5
3,592,943 - RR42_RS36285 0.17 -0.4
3,592,943 - RR42_RS36285 0.17 +1.0
3,593,075 - RR42_RS36285 0.27 +0.6
3,593,149 + RR42_RS36285 0.33 +0.3
3,593,149 + RR42_RS36285 0.33 +0.3
3,593,150 - RR42_RS36285 0.33 +1.5
3,593,170 + RR42_RS36285 0.35 +1.4
3,593,234 - RR42_RS36285 0.39 +1.6
3,593,689 + RR42_RS36285 0.73 +0.0
3,593,768 - RR42_RS36285 0.79 +0.2
3,593,768 - RR42_RS36285 0.79 +1.2
3,593,768 - RR42_RS36285 0.79 +0.3
3,593,929 + -0.2
3,593,930 - -0.0
3,593,984 - -0.0
3,593,984 - +0.4
3,594,077 + +0.4
3,594,078 - +0.1
3,594,494 + RR42_RS36290 0.44 +0.2
3,594,581 + RR42_RS36290 0.53 +0.2
3,594,582 - RR42_RS36290 0.53 -0.2
3,594,582 - RR42_RS36290 0.53 -1.9
3,594,969 - -0.8

Or see this region's nucleotide sequence