Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32360

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS32355 and RR42_RS32360 are separated by 601 nucleotidesRR42_RS32360 and RR42_RS32365 are separated by 878 nucleotides RR42_RS32355: RR42_RS32355 - polysaccharide deacetylase, at 2,651,195 to 2,652,058 _RS32355 RR42_RS32360: RR42_RS32360 - hypothetical protein, at 2,652,660 to 2,653,226 _RS32360 RR42_RS32365: RR42_RS32365 - magnesium ABC transporter ATPase, at 2,654,105 to 2,656,861 _RS32365 Position (kb) 2652 2653 2654Strain fitness (log2 ratio) -2 -1 0 1 2at 2651.695 kb on + strand, within RR42_RS32355at 2651.695 kb on + strand, within RR42_RS32355at 2652.377 kb on - strandat 2652.757 kb on + strand, within RR42_RS32360at 2652.792 kb on - strand, within RR42_RS32360at 2652.792 kb on - strand, within RR42_RS32360at 2652.968 kb on - strand, within RR42_RS32360at 2653.014 kb on - strand, within RR42_RS32360at 2653.069 kb on + strand, within RR42_RS32360at 2653.069 kb on + strand, within RR42_RS32360at 2653.161 kb on - strand, within RR42_RS32360at 2653.272 kb on + strandat 2653.273 kb on - strandat 2653.364 kb on + strandat 2653.365 kb on - strandat 2653.367 kb on + strandat 2653.368 kb on - strandat 2653.368 kb on - strandat 2653.368 kb on - strandat 2653.373 kb on + strandat 2653.374 kb on - strandat 2653.374 kb on - strandat 2653.374 kb on - strandat 2653.374 kb on - strandat 2653.374 kb on - strandat 2653.374 kb on - strandat 2653.430 kb on + strandat 2653.431 kb on - strandat 2653.431 kb on - strandat 2653.431 kb on - strandat 2653.439 kb on - strandat 2653.577 kb on + strandat 2653.587 kb on + strandat 2653.608 kb on + strandat 2653.658 kb on - strandat 2653.796 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,651,695 + RR42_RS32355 0.58 -2.0
2,651,695 + RR42_RS32355 0.58 -0.1
2,652,377 - -1.1
2,652,757 + RR42_RS32360 0.17 +0.8
2,652,792 - RR42_RS32360 0.23 -2.1
2,652,792 - RR42_RS32360 0.23 +0.4
2,652,968 - RR42_RS32360 0.54 +0.3
2,653,014 - RR42_RS32360 0.62 +1.7
2,653,069 + RR42_RS32360 0.72 -1.8
2,653,069 + RR42_RS32360 0.72 +1.1
2,653,161 - RR42_RS32360 0.88 +1.9
2,653,272 + +0.6
2,653,273 - +0.2
2,653,364 + +0.5
2,653,365 - +0.7
2,653,367 + -0.3
2,653,368 - +0.6
2,653,368 - +0.2
2,653,368 - +0.8
2,653,373 + -0.1
2,653,374 - +0.4
2,653,374 - -0.2
2,653,374 - -0.1
2,653,374 - +0.9
2,653,374 - +0.2
2,653,374 - +0.9
2,653,430 + +0.2
2,653,431 - +0.3
2,653,431 - +2.4
2,653,431 - -0.2
2,653,439 - -2.2
2,653,577 + -1.3
2,653,587 + +1.1
2,653,608 + -0.4
2,653,658 - +0.7
2,653,796 + -0.5

Or see this region's nucleotide sequence