Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28480

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28475 and RR42_RS28480 are separated by 27 nucleotidesRR42_RS28480 and RR42_RS28485 are separated by 65 nucleotidesRR42_RS28485 and RR42_RS28490 are separated by 191 nucleotides RR42_RS28475: RR42_RS28475 - dioxygenase, at 1,747,480 to 1,748,283 _RS28475 RR42_RS28480: RR42_RS28480 - DSBA oxidoreductase, at 1,748,311 to 1,748,904 _RS28480 RR42_RS28485: RR42_RS28485 - short-chain dehydrogenase, at 1,748,970 to 1,749,698 _RS28485 RR42_RS28490: RR42_RS28490 - hypothetical protein, at 1,749,890 to 1,750,270 _RS28490 Position (kb) 1748 1749Strain fitness (log2 ratio) -1 0 1 2at 1747.315 kb on + strandat 1747.315 kb on + strandat 1747.354 kb on + strandat 1747.404 kb on + strandat 1747.492 kb on - strandat 1747.669 kb on + strand, within RR42_RS28475at 1747.765 kb on + strand, within RR42_RS28475at 1747.792 kb on + strand, within RR42_RS28475at 1747.792 kb on + strand, within RR42_RS28475at 1747.792 kb on + strand, within RR42_RS28475at 1747.792 kb on + strand, within RR42_RS28475at 1747.792 kb on + strand, within RR42_RS28475at 1747.813 kb on + strand, within RR42_RS28475at 1747.814 kb on - strand, within RR42_RS28475at 1747.969 kb on - strand, within RR42_RS28475at 1748.146 kb on + strand, within RR42_RS28475at 1748.146 kb on + strand, within RR42_RS28475at 1748.580 kb on - strand, within RR42_RS28480at 1748.800 kb on + strand, within RR42_RS28480at 1748.855 kb on + strandat 1748.856 kb on - strandat 1749.046 kb on + strand, within RR42_RS28485at 1749.046 kb on + strand, within RR42_RS28485at 1749.612 kb on - strand, within RR42_RS28485at 1749.612 kb on - strand, within RR42_RS28485at 1749.835 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,747,315 + +0.8
1,747,315 + +1.8
1,747,354 + -0.1
1,747,404 + +1.0
1,747,492 - +1.0
1,747,669 + RR42_RS28475 0.24 -0.5
1,747,765 + RR42_RS28475 0.35 -0.2
1,747,792 + RR42_RS28475 0.39 -0.4
1,747,792 + RR42_RS28475 0.39 +0.9
1,747,792 + RR42_RS28475 0.39 -0.5
1,747,792 + RR42_RS28475 0.39 +0.0
1,747,792 + RR42_RS28475 0.39 -0.3
1,747,813 + RR42_RS28475 0.41 -0.1
1,747,814 - RR42_RS28475 0.42 +1.2
1,747,969 - RR42_RS28475 0.61 +0.1
1,748,146 + RR42_RS28475 0.83 +0.0
1,748,146 + RR42_RS28475 0.83 +0.9
1,748,580 - RR42_RS28480 0.45 -0.7
1,748,800 + RR42_RS28480 0.82 -1.6
1,748,855 + +0.2
1,748,856 - -0.4
1,749,046 + RR42_RS28485 0.10 +0.6
1,749,046 + RR42_RS28485 0.10 -0.7
1,749,612 - RR42_RS28485 0.88 +0.8
1,749,612 - RR42_RS28485 0.88 -1.3
1,749,835 - -0.4

Or see this region's nucleotide sequence