Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26145 and RR42_RS26150 are separated by 976 nucleotides RR42_RS26150 and RR42_RS26155 are separated by 182 nucleotides
RR42_RS26145: RR42_RS26145 - LysR family transcriptional regulator, at 1,221,291 to 1,222,256
_RS26145
RR42_RS26150: RR42_RS26150 - hypothetical protein, at 1,223,233 to 1,223,517
_RS26150
RR42_RS26155: RR42_RS26155 - succinate-semialdehyde dehydrogenase, at 1,223,700 to 1,225,163
_RS26155
Position (kb)
1223
1224 Strain fitness (log2 ratio)
-1
0
1
2 at 1222.254 kb on + strand at 1222.255 kb on - strand at 1222.255 kb on - strand at 1222.307 kb on + strand at 1222.307 kb on + strand at 1222.375 kb on + strand at 1222.376 kb on - strand at 1222.376 kb on - strand at 1222.376 kb on - strand at 1222.499 kb on - strand at 1222.749 kb on - strand at 1222.749 kb on - strand at 1222.787 kb on + strand at 1222.834 kb on - strand at 1222.881 kb on - strand at 1222.974 kb on - strand at 1223.088 kb on + strand at 1223.102 kb on - strand at 1223.130 kb on + strand at 1223.150 kb on - strand at 1223.150 kb on - strand at 1223.153 kb on + strand at 1223.153 kb on + strand at 1223.153 kb on + strand at 1223.153 kb on + strand at 1223.153 kb on + strand at 1223.154 kb on - strand at 1223.154 kb on - strand at 1223.154 kb on - strand at 1223.154 kb on - strand at 1223.154 kb on - strand at 1223.154 kb on - strand at 1223.154 kb on - strand at 1223.154 kb on - strand at 1223.161 kb on - strand at 1223.209 kb on + strand at 1223.215 kb on - strand at 1223.234 kb on + strand at 1223.234 kb on + strand at 1223.315 kb on + strand, within RR42_RS26150 at 1223.316 kb on - strand, within RR42_RS26150 at 1223.363 kb on + strand, within RR42_RS26150 at 1223.363 kb on + strand, within RR42_RS26150 at 1223.363 kb on + strand, within RR42_RS26150 at 1223.364 kb on - strand, within RR42_RS26150 at 1223.364 kb on - strand, within RR42_RS26150 at 1223.540 kb on + strand at 1223.559 kb on - strand at 1223.570 kb on - strand at 1223.590 kb on - strand at 1223.594 kb on - strand at 1223.598 kb on + strand at 1223.617 kb on - strand at 1223.620 kb on + strand at 1223.621 kb on - strand at 1223.722 kb on + strand at 1223.722 kb on + strand at 1223.722 kb on + strand at 1223.722 kb on + strand at 1223.722 kb on + strand at 1223.723 kb on - strand at 1223.723 kb on - strand at 1223.902 kb on + strand, within RR42_RS26155 at 1224.123 kb on - strand, within RR42_RS26155 at 1224.248 kb on - strand, within RR42_RS26155 at 1224.265 kb on + strand, within RR42_RS26155 at 1224.265 kb on + strand, within RR42_RS26155 at 1224.265 kb on + strand, within RR42_RS26155 at 1224.266 kb on - strand, within RR42_RS26155 at 1224.266 kb on - strand, within RR42_RS26155 at 1224.266 kb on - strand, within RR42_RS26155 at 1224.266 kb on - strand, within RR42_RS26155
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 1,222,254 + -0.9 1,222,255 - +2.5 1,222,255 - -0.5 1,222,307 + +0.8 1,222,307 + -0.7 1,222,375 + +0.2 1,222,376 - -0.5 1,222,376 - +0.2 1,222,376 - +0.4 1,222,499 - -0.4 1,222,749 - +0.7 1,222,749 - +0.1 1,222,787 + -0.1 1,222,834 - +1.9 1,222,881 - +0.1 1,222,974 - -0.8 1,223,088 + +0.9 1,223,102 - +0.5 1,223,130 + -0.9 1,223,150 - -0.7 1,223,150 - +1.0 1,223,153 + +0.2 1,223,153 + +1.7 1,223,153 + +0.4 1,223,153 + -0.3 1,223,153 + +0.0 1,223,154 - +0.5 1,223,154 - +1.2 1,223,154 - -0.4 1,223,154 - -0.1 1,223,154 - +0.5 1,223,154 - -0.2 1,223,154 - -0.6 1,223,154 - -0.2 1,223,161 - +1.5 1,223,209 + +0.0 1,223,215 - +0.1 1,223,234 + -0.6 1,223,234 + +0.5 1,223,315 + RR42_RS26150 0.29 +0.1 1,223,316 - RR42_RS26150 0.29 -0.8 1,223,363 + RR42_RS26150 0.46 +1.5 1,223,363 + RR42_RS26150 0.46 +1.0 1,223,363 + RR42_RS26150 0.46 +0.7 1,223,364 - RR42_RS26150 0.46 +1.9 1,223,364 - RR42_RS26150 0.46 +0.6 1,223,540 + +0.6 1,223,559 - -0.0 1,223,570 - -1.2 1,223,590 - -1.3 1,223,594 - -0.9 1,223,598 + +0.0 1,223,617 - +0.3 1,223,620 + -0.3 1,223,621 - +0.7 1,223,722 + +0.4 1,223,722 + +0.3 1,223,722 + -0.6 1,223,722 + -1.4 1,223,722 + +1.0 1,223,723 - +0.5 1,223,723 - +0.1 1,223,902 + RR42_RS26155 0.14 -0.1 1,224,123 - RR42_RS26155 0.29 -0.5 1,224,248 - RR42_RS26155 0.37 -0.4 1,224,265 + RR42_RS26155 0.39 -0.3 1,224,265 + RR42_RS26155 0.39 -0.1 1,224,265 + RR42_RS26155 0.39 +0.5 1,224,266 - RR42_RS26155 0.39 -0.9 1,224,266 - RR42_RS26155 0.39 +0.0 1,224,266 - RR42_RS26155 0.39 -0.1 1,224,266 - RR42_RS26155 0.39 +0.7
Or see this region's nucleotide sequence