Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26150

Experiment: L-Leucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS26145 and RR42_RS26150 are separated by 976 nucleotidesRR42_RS26150 and RR42_RS26155 are separated by 182 nucleotides RR42_RS26145: RR42_RS26145 - LysR family transcriptional regulator, at 1,221,291 to 1,222,256 _RS26145 RR42_RS26150: RR42_RS26150 - hypothetical protein, at 1,223,233 to 1,223,517 _RS26150 RR42_RS26155: RR42_RS26155 - succinate-semialdehyde dehydrogenase, at 1,223,700 to 1,225,163 _RS26155 Position (kb) 1223 1224Strain fitness (log2 ratio) -1 0 1 2at 1222.254 kb on + strandat 1222.255 kb on - strandat 1222.255 kb on - strandat 1222.307 kb on + strandat 1222.307 kb on + strandat 1222.375 kb on + strandat 1222.376 kb on - strandat 1222.376 kb on - strandat 1222.376 kb on - strandat 1222.499 kb on - strandat 1222.749 kb on - strandat 1222.749 kb on - strandat 1222.787 kb on + strandat 1222.834 kb on - strandat 1222.881 kb on - strandat 1222.974 kb on - strandat 1223.088 kb on + strandat 1223.102 kb on - strandat 1223.130 kb on + strandat 1223.150 kb on - strandat 1223.150 kb on - strandat 1223.153 kb on + strandat 1223.153 kb on + strandat 1223.153 kb on + strandat 1223.153 kb on + strandat 1223.153 kb on + strandat 1223.154 kb on - strandat 1223.154 kb on - strandat 1223.154 kb on - strandat 1223.154 kb on - strandat 1223.154 kb on - strandat 1223.154 kb on - strandat 1223.154 kb on - strandat 1223.154 kb on - strandat 1223.161 kb on - strandat 1223.209 kb on + strandat 1223.215 kb on - strandat 1223.234 kb on + strandat 1223.234 kb on + strandat 1223.315 kb on + strand, within RR42_RS26150at 1223.316 kb on - strand, within RR42_RS26150at 1223.363 kb on + strand, within RR42_RS26150at 1223.363 kb on + strand, within RR42_RS26150at 1223.363 kb on + strand, within RR42_RS26150at 1223.364 kb on - strand, within RR42_RS26150at 1223.364 kb on - strand, within RR42_RS26150at 1223.540 kb on + strandat 1223.559 kb on - strandat 1223.570 kb on - strandat 1223.590 kb on - strandat 1223.594 kb on - strandat 1223.598 kb on + strandat 1223.617 kb on - strandat 1223.620 kb on + strandat 1223.621 kb on - strandat 1223.722 kb on + strandat 1223.722 kb on + strandat 1223.722 kb on + strandat 1223.722 kb on + strandat 1223.722 kb on + strandat 1223.723 kb on - strandat 1223.723 kb on - strandat 1223.902 kb on + strand, within RR42_RS26155at 1224.123 kb on - strand, within RR42_RS26155at 1224.248 kb on - strand, within RR42_RS26155at 1224.265 kb on + strand, within RR42_RS26155at 1224.265 kb on + strand, within RR42_RS26155at 1224.265 kb on + strand, within RR42_RS26155at 1224.266 kb on - strand, within RR42_RS26155at 1224.266 kb on - strand, within RR42_RS26155at 1224.266 kb on - strand, within RR42_RS26155at 1224.266 kb on - strand, within RR42_RS26155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
remove
1,222,254 + -0.9
1,222,255 - +2.5
1,222,255 - -0.5
1,222,307 + +0.8
1,222,307 + -0.7
1,222,375 + +0.2
1,222,376 - -0.5
1,222,376 - +0.2
1,222,376 - +0.4
1,222,499 - -0.4
1,222,749 - +0.7
1,222,749 - +0.1
1,222,787 + -0.1
1,222,834 - +1.9
1,222,881 - +0.1
1,222,974 - -0.8
1,223,088 + +0.9
1,223,102 - +0.5
1,223,130 + -0.9
1,223,150 - -0.7
1,223,150 - +1.0
1,223,153 + +0.2
1,223,153 + +1.7
1,223,153 + +0.4
1,223,153 + -0.3
1,223,153 + +0.0
1,223,154 - +0.5
1,223,154 - +1.2
1,223,154 - -0.4
1,223,154 - -0.1
1,223,154 - +0.5
1,223,154 - -0.2
1,223,154 - -0.6
1,223,154 - -0.2
1,223,161 - +1.5
1,223,209 + +0.0
1,223,215 - +0.1
1,223,234 + -0.6
1,223,234 + +0.5
1,223,315 + RR42_RS26150 0.29 +0.1
1,223,316 - RR42_RS26150 0.29 -0.8
1,223,363 + RR42_RS26150 0.46 +1.5
1,223,363 + RR42_RS26150 0.46 +1.0
1,223,363 + RR42_RS26150 0.46 +0.7
1,223,364 - RR42_RS26150 0.46 +1.9
1,223,364 - RR42_RS26150 0.46 +0.6
1,223,540 + +0.6
1,223,559 - -0.0
1,223,570 - -1.2
1,223,590 - -1.3
1,223,594 - -0.9
1,223,598 + +0.0
1,223,617 - +0.3
1,223,620 + -0.3
1,223,621 - +0.7
1,223,722 + +0.4
1,223,722 + +0.3
1,223,722 + -0.6
1,223,722 + -1.4
1,223,722 + +1.0
1,223,723 - +0.5
1,223,723 - +0.1
1,223,902 + RR42_RS26155 0.14 -0.1
1,224,123 - RR42_RS26155 0.29 -0.5
1,224,248 - RR42_RS26155 0.37 -0.4
1,224,265 + RR42_RS26155 0.39 -0.3
1,224,265 + RR42_RS26155 0.39 -0.1
1,224,265 + RR42_RS26155 0.39 +0.5
1,224,266 - RR42_RS26155 0.39 -0.9
1,224,266 - RR42_RS26155 0.39 +0.0
1,224,266 - RR42_RS26155 0.39 -0.1
1,224,266 - RR42_RS26155 0.39 +0.7

Or see this region's nucleotide sequence