Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24120 and RR42_RS24125 are separated by 138 nucleotides RR42_RS24125 and RR42_RS24130 overlap by 1 nucleotides RR42_RS24130 and RR42_RS24135 are separated by 122 nucleotides
RR42_RS24120: RR42_RS24120 - C4-dicarboxylate ABC transporter substrate-binding protein, at 735,498 to 736,481
_RS24120
RR42_RS24125: RR42_RS24125 - hypothetical protein, at 736,620 to 740,075
_RS24125
RR42_RS24130: RR42_RS24130 - hypothetical protein, at 740,075 to 740,494
_RS24130
RR42_RS24135: RR42_RS24135 - hypothetical protein, at 740,617 to 741,528
_RS24135
Position (kb) 736
737
738
739
740
741 Strain fitness (log2 ratio) -2
-1
0
1
2 at 735.809 kb on - strand, within RR42_RS24120 at 735.836 kb on + strand, within RR42_RS24120 at 735.916 kb on + strand, within RR42_RS24120 at 735.916 kb on + strand, within RR42_RS24120 at 735.943 kb on - strand, within RR42_RS24120 at 735.943 kb on - strand, within RR42_RS24120 at 735.943 kb on - strand, within RR42_RS24120 at 735.943 kb on - strand, within RR42_RS24120 at 735.963 kb on + strand, within RR42_RS24120 at 736.117 kb on + strand, within RR42_RS24120 at 736.117 kb on + strand, within RR42_RS24120 at 736.118 kb on - strand, within RR42_RS24120 at 736.118 kb on - strand, within RR42_RS24120 at 736.169 kb on + strand, within RR42_RS24120 at 736.170 kb on - strand, within RR42_RS24120 at 736.170 kb on - strand, within RR42_RS24120 at 736.170 kb on - strand, within RR42_RS24120 at 736.201 kb on + strand, within RR42_RS24120 at 736.201 kb on + strand, within RR42_RS24120 at 736.226 kb on + strand, within RR42_RS24120 at 736.226 kb on + strand, within RR42_RS24120 at 736.299 kb on + strand, within RR42_RS24120 at 736.299 kb on + strand, within RR42_RS24120 at 736.300 kb on - strand, within RR42_RS24120 at 736.471 kb on - strand at 736.497 kb on - strand at 736.504 kb on + strand at 736.504 kb on + strand at 736.505 kb on - strand at 736.655 kb on + strand at 736.655 kb on + strand at 736.669 kb on - strand at 736.669 kb on - strand at 736.735 kb on + strand at 736.735 kb on + strand at 736.736 kb on - strand at 736.912 kb on + strand at 736.912 kb on + strand at 736.913 kb on - strand at 736.913 kb on - strand at 736.913 kb on - strand at 736.913 kb on - strand at 736.994 kb on - strand, within RR42_RS24125 at 737.013 kb on + strand, within RR42_RS24125 at 737.013 kb on + strand, within RR42_RS24125 at 737.013 kb on + strand, within RR42_RS24125 at 737.013 kb on + strand, within RR42_RS24125 at 737.014 kb on - strand, within RR42_RS24125 at 737.053 kb on + strand, within RR42_RS24125 at 737.128 kb on + strand, within RR42_RS24125 at 737.128 kb on + strand, within RR42_RS24125 at 737.129 kb on - strand, within RR42_RS24125 at 737.446 kb on + strand, within RR42_RS24125 at 737.446 kb on + strand, within RR42_RS24125 at 737.447 kb on - strand, within RR42_RS24125 at 737.447 kb on - strand, within RR42_RS24125 at 737.651 kb on + strand, within RR42_RS24125 at 737.716 kb on + strand, within RR42_RS24125 at 737.716 kb on + strand, within RR42_RS24125 at 737.717 kb on - strand, within RR42_RS24125 at 737.739 kb on + strand, within RR42_RS24125 at 737.739 kb on + strand, within RR42_RS24125 at 737.739 kb on + strand, within RR42_RS24125 at 737.739 kb on + strand, within RR42_RS24125 at 737.739 kb on + strand, within RR42_RS24125 at 737.831 kb on - strand, within RR42_RS24125 at 737.920 kb on + strand, within RR42_RS24125 at 737.920 kb on + strand, within RR42_RS24125 at 737.920 kb on + strand, within RR42_RS24125 at 737.921 kb on - strand, within RR42_RS24125 at 737.921 kb on - strand, within RR42_RS24125 at 737.921 kb on - strand, within RR42_RS24125 at 737.921 kb on - strand, within RR42_RS24125 at 737.929 kb on + strand, within RR42_RS24125 at 737.930 kb on - strand, within RR42_RS24125 at 738.205 kb on - strand, within RR42_RS24125 at 738.271 kb on + strand, within RR42_RS24125 at 738.294 kb on - strand, within RR42_RS24125 at 738.294 kb on - strand, within RR42_RS24125 at 738.377 kb on - strand, within RR42_RS24125 at 738.399 kb on + strand, within RR42_RS24125 at 738.400 kb on - strand, within RR42_RS24125 at 738.429 kb on + strand, within RR42_RS24125 at 738.429 kb on + strand, within RR42_RS24125 at 738.429 kb on + strand, within RR42_RS24125 at 738.430 kb on - strand, within RR42_RS24125 at 738.430 kb on - strand, within RR42_RS24125 at 738.562 kb on + strand, within RR42_RS24125 at 738.562 kb on + strand, within RR42_RS24125 at 738.622 kb on + strand, within RR42_RS24125 at 738.948 kb on + strand, within RR42_RS24125 at 739.294 kb on + strand, within RR42_RS24125 at 739.294 kb on + strand, within RR42_RS24125 at 739.295 kb on - strand, within RR42_RS24125 at 739.295 kb on - strand, within RR42_RS24125 at 739.325 kb on - strand, within RR42_RS24125 at 739.385 kb on + strand, within RR42_RS24125 at 739.385 kb on + strand, within RR42_RS24125 at 739.385 kb on + strand, within RR42_RS24125 at 739.386 kb on - strand, within RR42_RS24125 at 739.488 kb on + strand, within RR42_RS24125 at 739.570 kb on + strand, within RR42_RS24125 at 739.615 kb on + strand, within RR42_RS24125 at 739.616 kb on - strand, within RR42_RS24125 at 739.655 kb on + strand, within RR42_RS24125 at 739.655 kb on + strand, within RR42_RS24125 at 739.747 kb on + strand at 739.747 kb on + strand at 739.747 kb on + strand at 739.747 kb on + strand at 739.754 kb on - strand at 739.754 kb on - strand at 740.051 kb on - strand at 740.077 kb on - strand at 740.113 kb on + strand at 740.114 kb on - strand at 740.114 kb on - strand at 740.114 kb on - strand at 740.159 kb on + strand, within RR42_RS24130 at 740.159 kb on + strand, within RR42_RS24130 at 740.160 kb on - strand, within RR42_RS24130 at 740.160 kb on - strand, within RR42_RS24130 at 740.191 kb on + strand, within RR42_RS24130 at 740.191 kb on + strand, within RR42_RS24130 at 740.192 kb on - strand, within RR42_RS24130 at 740.192 kb on - strand, within RR42_RS24130 at 740.195 kb on + strand, within RR42_RS24130 at 740.196 kb on - strand, within RR42_RS24130 at 740.236 kb on - strand, within RR42_RS24130 at 740.242 kb on - strand, within RR42_RS24130 at 740.274 kb on + strand, within RR42_RS24130 at 740.274 kb on + strand, within RR42_RS24130 at 740.275 kb on - strand, within RR42_RS24130 at 740.275 kb on - strand, within RR42_RS24130 at 740.333 kb on + strand, within RR42_RS24130 at 740.333 kb on + strand, within RR42_RS24130 at 740.334 kb on - strand, within RR42_RS24130 at 740.334 kb on - strand, within RR42_RS24130 at 740.377 kb on - strand, within RR42_RS24130 at 740.400 kb on - strand, within RR42_RS24130 at 740.400 kb on - strand, within RR42_RS24130 at 740.400 kb on - strand, within RR42_RS24130 at 740.448 kb on - strand, within RR42_RS24130 at 740.448 kb on - strand, within RR42_RS24130 at 740.480 kb on + strand at 740.480 kb on + strand at 740.509 kb on + strand at 740.510 kb on - strand at 740.539 kb on + strand at 740.540 kb on - strand at 740.571 kb on + strand at 740.572 kb on - strand at 740.603 kb on + strand at 740.942 kb on - strand, within RR42_RS24135
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 735,809 - RR42_RS24120 0.32 +0.3 735,836 + RR42_RS24120 0.34 -1.3 735,916 + RR42_RS24120 0.42 +0.0 735,916 + RR42_RS24120 0.42 -0.4 735,943 - RR42_RS24120 0.45 +0.3 735,943 - RR42_RS24120 0.45 +0.2 735,943 - RR42_RS24120 0.45 +0.1 735,943 - RR42_RS24120 0.45 +0.1 735,963 + RR42_RS24120 0.47 +1.6 736,117 + RR42_RS24120 0.63 +0.1 736,117 + RR42_RS24120 0.63 +0.7 736,118 - RR42_RS24120 0.63 -0.5 736,118 - RR42_RS24120 0.63 -0.1 736,169 + RR42_RS24120 0.68 -0.8 736,170 - RR42_RS24120 0.68 -0.6 736,170 - RR42_RS24120 0.68 -0.6 736,170 - RR42_RS24120 0.68 -1.5 736,201 + RR42_RS24120 0.71 -2.3 736,201 + RR42_RS24120 0.71 +0.4 736,226 + RR42_RS24120 0.74 -0.3 736,226 + RR42_RS24120 0.74 -0.0 736,299 + RR42_RS24120 0.81 +0.5 736,299 + RR42_RS24120 0.81 +0.1 736,300 - RR42_RS24120 0.82 -0.2 736,471 - +0.5 736,497 - -0.2 736,504 + -0.2 736,504 + +1.9 736,505 - +0.1 736,655 + -0.9 736,655 + -0.7 736,669 - -0.6 736,669 - +0.2 736,735 + +0.1 736,735 + -0.2 736,736 - -0.7 736,912 + +0.5 736,912 + +1.0 736,913 - +1.7 736,913 - -0.8 736,913 - -0.0 736,913 - -0.3 736,994 - RR42_RS24125 0.11 +0.3 737,013 + RR42_RS24125 0.11 -2.3 737,013 + RR42_RS24125 0.11 -1.0 737,013 + RR42_RS24125 0.11 +0.1 737,013 + RR42_RS24125 0.11 -1.4 737,014 - RR42_RS24125 0.11 -0.5 737,053 + RR42_RS24125 0.13 +0.3 737,128 + RR42_RS24125 0.15 +0.1 737,128 + RR42_RS24125 0.15 -0.4 737,129 - RR42_RS24125 0.15 +0.5 737,446 + RR42_RS24125 0.24 +0.9 737,446 + RR42_RS24125 0.24 -0.0 737,447 - RR42_RS24125 0.24 +1.2 737,447 - RR42_RS24125 0.24 -0.0 737,651 + RR42_RS24125 0.30 +0.4 737,716 + RR42_RS24125 0.32 +1.0 737,716 + RR42_RS24125 0.32 -0.3 737,717 - RR42_RS24125 0.32 -0.5 737,739 + RR42_RS24125 0.32 -0.0 737,739 + RR42_RS24125 0.32 +0.3 737,739 + RR42_RS24125 0.32 -0.8 737,739 + RR42_RS24125 0.32 -0.7 737,739 + RR42_RS24125 0.32 -0.7 737,831 - RR42_RS24125 0.35 -0.4 737,920 + RR42_RS24125 0.38 +0.1 737,920 + RR42_RS24125 0.38 -1.4 737,920 + RR42_RS24125 0.38 -0.3 737,921 - RR42_RS24125 0.38 -1.2 737,921 - RR42_RS24125 0.38 -0.4 737,921 - RR42_RS24125 0.38 -1.5 737,921 - RR42_RS24125 0.38 +0.4 737,929 + RR42_RS24125 0.38 -1.2 737,930 - RR42_RS24125 0.38 +0.5 738,205 - RR42_RS24125 0.46 +0.9 738,271 + RR42_RS24125 0.48 -0.9 738,294 - RR42_RS24125 0.48 -0.2 738,294 - RR42_RS24125 0.48 +0.4 738,377 - RR42_RS24125 0.51 +1.3 738,399 + RR42_RS24125 0.51 +0.2 738,400 - RR42_RS24125 0.52 +0.9 738,429 + RR42_RS24125 0.52 +1.0 738,429 + RR42_RS24125 0.52 -0.8 738,429 + RR42_RS24125 0.52 +0.2 738,430 - RR42_RS24125 0.52 -1.2 738,430 - RR42_RS24125 0.52 -0.3 738,562 + RR42_RS24125 0.56 -1.0 738,562 + RR42_RS24125 0.56 +0.4 738,622 + RR42_RS24125 0.58 -0.3 738,948 + RR42_RS24125 0.67 -0.3 739,294 + RR42_RS24125 0.77 +0.5 739,294 + RR42_RS24125 0.77 +0.4 739,295 - RR42_RS24125 0.77 -1.1 739,295 - RR42_RS24125 0.77 +0.8 739,325 - RR42_RS24125 0.78 +0.4 739,385 + RR42_RS24125 0.80 -0.0 739,385 + RR42_RS24125 0.80 -0.1 739,385 + RR42_RS24125 0.80 +0.6 739,386 - RR42_RS24125 0.80 -0.0 739,488 + RR42_RS24125 0.83 +0.3 739,570 + RR42_RS24125 0.85 -0.9 739,615 + RR42_RS24125 0.87 +0.2 739,616 - RR42_RS24125 0.87 -1.0 739,655 + RR42_RS24125 0.88 -0.5 739,655 + RR42_RS24125 0.88 +0.4 739,747 + +0.2 739,747 + +0.7 739,747 + +0.7 739,747 + -0.4 739,754 - -0.0 739,754 - -1.9 740,051 - +0.1 740,077 - +1.0 740,113 + +0.3 740,114 - -0.3 740,114 - +2.2 740,114 - -0.0 740,159 + RR42_RS24130 0.20 -0.2 740,159 + RR42_RS24130 0.20 +0.3 740,160 - RR42_RS24130 0.20 +1.2 740,160 - RR42_RS24130 0.20 -0.1 740,191 + RR42_RS24130 0.28 +0.6 740,191 + RR42_RS24130 0.28 +0.7 740,192 - RR42_RS24130 0.28 -0.6 740,192 - RR42_RS24130 0.28 +0.7 740,195 + RR42_RS24130 0.29 -0.2 740,196 - RR42_RS24130 0.29 -0.7 740,236 - RR42_RS24130 0.38 -0.3 740,242 - RR42_RS24130 0.40 +0.2 740,274 + RR42_RS24130 0.47 +0.2 740,274 + RR42_RS24130 0.47 -0.3 740,275 - RR42_RS24130 0.48 +0.3 740,275 - RR42_RS24130 0.48 -0.5 740,333 + RR42_RS24130 0.61 -0.7 740,333 + RR42_RS24130 0.61 -0.4 740,334 - RR42_RS24130 0.62 -1.5 740,334 - RR42_RS24130 0.62 +0.7 740,377 - RR42_RS24130 0.72 +1.0 740,400 - RR42_RS24130 0.77 -0.1 740,400 - RR42_RS24130 0.77 -0.4 740,400 - RR42_RS24130 0.77 -0.8 740,448 - RR42_RS24130 0.89 +0.5 740,448 - RR42_RS24130 0.89 -0.6 740,480 + +0.1 740,480 + -2.7 740,509 + +1.2 740,510 - +0.5 740,539 + -0.4 740,540 - +0.2 740,571 + +0.1 740,572 - +0.3 740,603 + +0.6 740,942 - RR42_RS24135 0.36 -1.2
Or see this region's nucleotide sequence