Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21245

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21240 and RR42_RS21245 are separated by 150 nucleotidesRR42_RS21245 and RR42_RS21250 are separated by 247 nucleotidesRR42_RS21250 and RR42_RS21255 are separated by 268 nucleotides RR42_RS21240: RR42_RS21240 - MarR family transcriptional regulator, at 91,721 to 92,266 _RS21240 RR42_RS21245: RR42_RS21245 - nicotinate-nucleotide pyrophosphorylase, at 92,417 to 93,253 _RS21245 RR42_RS21250: RR42_RS21250 - antibiotic biosynthesis monooxygenase, at 93,501 to 93,800 _RS21250 RR42_RS21255: RR42_RS21255 - LysR family transcriptional regulator, at 94,069 to 94,947 _RS21255 Position (kb) 92 93 94Strain fitness (log2 ratio) -2 -1 0 1at 91.635 kb on + strandat 91.636 kb on - strandat 91.636 kb on - strandat 91.636 kb on - strandat 91.720 kb on + strandat 91.720 kb on + strandat 92.372 kb on + strandat 92.373 kb on - strandat 92.392 kb on + strandat 92.393 kb on - strandat 92.484 kb on + strandat 92.484 kb on + strandat 92.484 kb on + strandat 92.484 kb on + strandat 92.484 kb on + strandat 92.485 kb on - strandat 92.485 kb on - strandat 92.485 kb on - strandat 92.904 kb on + strand, within RR42_RS21245at 92.904 kb on + strand, within RR42_RS21245at 93.102 kb on - strand, within RR42_RS21245at 93.102 kb on - strand, within RR42_RS21245at 93.102 kb on - strand, within RR42_RS21245at 93.102 kb on - strand, within RR42_RS21245at 93.137 kb on - strand, within RR42_RS21245at 93.138 kb on + strand, within RR42_RS21245at 93.138 kb on + strand, within RR42_RS21245at 93.138 kb on + strand, within RR42_RS21245at 93.139 kb on - strand, within RR42_RS21245at 93.139 kb on - strand, within RR42_RS21245at 93.139 kb on - strand, within RR42_RS21245at 93.249 kb on + strandat 93.250 kb on - strandat 93.250 kb on - strandat 93.250 kb on - strandat 93.324 kb on - strandat 93.350 kb on + strandat 93.396 kb on - strandat 93.431 kb on + strandat 93.431 kb on + strandat 93.431 kb on + strandat 93.431 kb on + strandat 93.431 kb on + strandat 93.432 kb on - strandat 93.432 kb on - strandat 93.432 kb on - strandat 93.891 kb on - strandat 93.925 kb on + strandat 93.926 kb on + strandat 93.969 kb on + strandat 93.970 kb on - strandat 94.142 kb on + strandat 94.142 kb on + strandat 94.143 kb on - strandat 94.143 kb on - strandat 94.143 kb on - strandat 94.143 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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91,635 + +1.2
91,636 - +0.0
91,636 - +0.3
91,636 - +0.9
91,720 + +0.5
91,720 + -1.0
92,372 + -0.9
92,373 - -1.3
92,392 + +0.7
92,393 - +0.1
92,484 + +0.0
92,484 + -0.3
92,484 + +0.3
92,484 + +0.1
92,484 + +0.8
92,485 - -0.1
92,485 - -2.5
92,485 - +1.4
92,904 + RR42_RS21245 0.58 -0.1
92,904 + RR42_RS21245 0.58 +1.0
93,102 - RR42_RS21245 0.82 +1.2
93,102 - RR42_RS21245 0.82 -0.0
93,102 - RR42_RS21245 0.82 +0.1
93,102 - RR42_RS21245 0.82 +0.5
93,137 - RR42_RS21245 0.86 -0.6
93,138 + RR42_RS21245 0.86 -0.5
93,138 + RR42_RS21245 0.86 +0.3
93,138 + RR42_RS21245 0.86 +1.6
93,139 - RR42_RS21245 0.86 -0.1
93,139 - RR42_RS21245 0.86 -1.3
93,139 - RR42_RS21245 0.86 +0.4
93,249 + +0.5
93,250 - -0.6
93,250 - -0.9
93,250 - -1.1
93,324 - +0.3
93,350 + -0.7
93,396 - +1.2
93,431 + -0.7
93,431 + -0.1
93,431 + +1.6
93,431 + +0.4
93,431 + +0.6
93,432 - +0.9
93,432 - +0.3
93,432 - +1.1
93,891 - +0.3
93,925 + -0.4
93,926 + -0.3
93,969 + -1.1
93,970 - -1.0
94,142 + +0.4
94,142 + +1.4
94,143 - -0.8
94,143 - -0.3
94,143 - +0.5
94,143 - +0.0

Or see this region's nucleotide sequence