Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14870

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14855 and RR42_RS14860 are separated by 22 nucleotidesRR42_RS14860 and RR42_RS14865 are separated by 209 nucleotidesRR42_RS14865 and RR42_RS14870 are separated by 25 nucleotidesRR42_RS14870 and RR42_RS14875 are separated by 183 nucleotides RR42_RS14855: RR42_RS14855 - monooxygenase, at 3,201,962 to 3,203,653 _RS14855 RR42_RS14860: RR42_RS14860 - hypothetical protein, at 3,203,676 to 3,203,870 _RS14860 RR42_RS14865: RR42_RS14865 - hypothetical protein, at 3,204,080 to 3,204,562 _RS14865 RR42_RS14870: RR42_RS14870 - hypothetical protein, at 3,204,588 to 3,205,784 _RS14870 RR42_RS14875: RR42_RS14875 - hypothetical protein, at 3,205,968 to 3,215,510 _RS14875 Position (kb) 3204 3205 3206Strain fitness (log2 ratio) -1 0 1 2at 3203.698 kb on + strand, within RR42_RS14860at 3203.725 kb on - strand, within RR42_RS14860at 3203.725 kb on - strand, within RR42_RS14860at 3203.858 kb on + strandat 3203.859 kb on - strandat 3203.868 kb on + strandat 3204.689 kb on - strandat 3205.139 kb on - strand, within RR42_RS14870at 3205.159 kb on + strand, within RR42_RS14870at 3205.160 kb on - strand, within RR42_RS14870at 3205.160 kb on - strand, within RR42_RS14870at 3205.436 kb on - strand, within RR42_RS14870at 3205.450 kb on + strand, within RR42_RS14870at 3205.450 kb on + strand, within RR42_RS14870at 3205.450 kb on + strand, within RR42_RS14870at 3205.472 kb on - strand, within RR42_RS14870at 3205.490 kb on - strand, within RR42_RS14870at 3205.490 kb on - strand, within RR42_RS14870at 3205.490 kb on - strand, within RR42_RS14870at 3205.543 kb on + strand, within RR42_RS14870at 3205.543 kb on + strand, within RR42_RS14870at 3205.546 kb on + strand, within RR42_RS14870at 3205.546 kb on + strand, within RR42_RS14870at 3205.547 kb on - strand, within RR42_RS14870at 3205.547 kb on - strand, within RR42_RS14870at 3205.547 kb on - strand, within RR42_RS14870at 3205.547 kb on - strand, within RR42_RS14870at 3205.547 kb on - strand, within RR42_RS14870at 3205.582 kb on + strand, within RR42_RS14870at 3205.626 kb on - strand, within RR42_RS14870at 3205.651 kb on + strand, within RR42_RS14870at 3205.685 kb on - strandat 3205.715 kb on - strandat 3205.717 kb on + strandat 3205.717 kb on + strandat 3205.717 kb on + strandat 3205.718 kb on - strandat 3205.718 kb on - strandat 3205.718 kb on - strandat 3205.969 kb on + strandat 3205.970 kb on - strandat 3206.047 kb on + strandat 3206.047 kb on + strandat 3206.260 kb on + strandat 3206.260 kb on + strandat 3206.260 kb on + strandat 3206.260 kb on + strandat 3206.261 kb on - strandat 3206.309 kb on - strandat 3206.564 kb on - strandat 3206.656 kb on + strandat 3206.657 kb on - strandat 3206.689 kb on + strandat 3206.690 kb on - strandat 3206.690 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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3,203,698 + RR42_RS14860 0.11 +0.9
3,203,725 - RR42_RS14860 0.25 +0.9
3,203,725 - RR42_RS14860 0.25 +0.8
3,203,858 + -0.6
3,203,859 - +0.0
3,203,868 + +1.0
3,204,689 - +0.3
3,205,139 - RR42_RS14870 0.46 +0.3
3,205,159 + RR42_RS14870 0.48 +0.1
3,205,160 - RR42_RS14870 0.48 +0.1
3,205,160 - RR42_RS14870 0.48 -0.2
3,205,436 - RR42_RS14870 0.71 -0.5
3,205,450 + RR42_RS14870 0.72 +0.9
3,205,450 + RR42_RS14870 0.72 +0.4
3,205,450 + RR42_RS14870 0.72 +0.6
3,205,472 - RR42_RS14870 0.74 +0.0
3,205,490 - RR42_RS14870 0.75 -0.8
3,205,490 - RR42_RS14870 0.75 -0.5
3,205,490 - RR42_RS14870 0.75 -1.0
3,205,543 + RR42_RS14870 0.80 +1.0
3,205,543 + RR42_RS14870 0.80 +1.6
3,205,546 + RR42_RS14870 0.80 +0.7
3,205,546 + RR42_RS14870 0.80 +0.3
3,205,547 - RR42_RS14870 0.80 +0.2
3,205,547 - RR42_RS14870 0.80 +0.1
3,205,547 - RR42_RS14870 0.80 -1.0
3,205,547 - RR42_RS14870 0.80 +0.2
3,205,547 - RR42_RS14870 0.80 -0.4
3,205,582 + RR42_RS14870 0.83 +0.4
3,205,626 - RR42_RS14870 0.87 +1.9
3,205,651 + RR42_RS14870 0.89 +0.6
3,205,685 - -0.4
3,205,715 - +0.1
3,205,717 + -0.4
3,205,717 + -0.0
3,205,717 + +0.4
3,205,718 - -0.1
3,205,718 - +0.4
3,205,718 - +0.5
3,205,969 + +0.9
3,205,970 - +0.8
3,206,047 + -0.8
3,206,047 + -1.4
3,206,260 + -0.4
3,206,260 + +0.3
3,206,260 + +1.0
3,206,260 + -0.1
3,206,261 - -0.1
3,206,309 - +0.6
3,206,564 - -1.1
3,206,656 + +0.3
3,206,657 - +2.3
3,206,689 + +1.4
3,206,690 - -0.2
3,206,690 - -0.9

Or see this region's nucleotide sequence