Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11375

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11370 and RR42_RS11375 are separated by 244 nucleotidesRR42_RS11375 and RR42_RS11380 are separated by 113 nucleotidesRR42_RS11380 and RR42_RS11385 are separated by 76 nucleotides RR42_RS11370: RR42_RS11370 - ABC transporter ATP-binding protein, at 2,434,745 to 2,436,355 _RS11370 RR42_RS11375: RR42_RS11375 - peptidase S66, at 2,436,600 to 2,437,574 _RS11375 RR42_RS11380: RR42_RS11380 - hypothetical protein, at 2,437,688 to 2,438,197 _RS11380 RR42_RS11385: RR42_RS11385 - 6-carboxy-5,6,7,8-tetrahydropterin synthase, at 2,438,274 to 2,438,750 _RS11385 Position (kb) 2436 2437 2438Strain fitness (log2 ratio) -2 -1 0 1 2at 2435.638 kb on - strand, within RR42_RS11370at 2435.638 kb on - strand, within RR42_RS11370at 2435.638 kb on - strand, within RR42_RS11370at 2435.646 kb on + strand, within RR42_RS11370at 2435.647 kb on - strand, within RR42_RS11370at 2435.647 kb on - strand, within RR42_RS11370at 2435.676 kb on + strand, within RR42_RS11370at 2435.677 kb on - strand, within RR42_RS11370at 2435.677 kb on - strand, within RR42_RS11370at 2435.803 kb on + strand, within RR42_RS11370at 2435.980 kb on - strand, within RR42_RS11370at 2435.989 kb on - strand, within RR42_RS11370at 2436.018 kb on + strand, within RR42_RS11370at 2436.018 kb on + strand, within RR42_RS11370at 2436.019 kb on - strand, within RR42_RS11370at 2436.019 kb on - strand, within RR42_RS11370at 2436.048 kb on + strand, within RR42_RS11370at 2436.129 kb on + strand, within RR42_RS11370at 2436.129 kb on + strand, within RR42_RS11370at 2436.267 kb on + strandat 2436.298 kb on + strandat 2436.346 kb on + strandat 2436.369 kb on + strandat 2436.369 kb on + strandat 2436.369 kb on + strandat 2436.369 kb on + strandat 2436.369 kb on + strandat 2436.369 kb on + strandat 2436.369 kb on + strandat 2436.369 kb on + strandat 2436.369 kb on + strandat 2436.370 kb on - strandat 2436.370 kb on - strandat 2436.370 kb on - strandat 2436.370 kb on - strandat 2436.449 kb on + strandat 2436.449 kb on + strandat 2436.594 kb on + strandat 2437.673 kb on + strandat 2437.674 kb on - strandat 2437.685 kb on + strandat 2437.685 kb on + strandat 2437.686 kb on - strandat 2437.686 kb on - strandat 2437.686 kb on - strandat 2438.167 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,435,638 - RR42_RS11370 0.55 -0.0
2,435,638 - RR42_RS11370 0.55 +0.3
2,435,638 - RR42_RS11370 0.55 +0.3
2,435,646 + RR42_RS11370 0.56 +2.3
2,435,647 - RR42_RS11370 0.56 +0.5
2,435,647 - RR42_RS11370 0.56 +0.1
2,435,676 + RR42_RS11370 0.58 -0.4
2,435,677 - RR42_RS11370 0.58 -0.4
2,435,677 - RR42_RS11370 0.58 -0.2
2,435,803 + RR42_RS11370 0.66 -0.2
2,435,980 - RR42_RS11370 0.77 +0.1
2,435,989 - RR42_RS11370 0.77 -0.2
2,436,018 + RR42_RS11370 0.79 +0.9
2,436,018 + RR42_RS11370 0.79 -2.1
2,436,019 - RR42_RS11370 0.79 +0.3
2,436,019 - RR42_RS11370 0.79 -0.2
2,436,048 + RR42_RS11370 0.81 +0.5
2,436,129 + RR42_RS11370 0.86 +0.3
2,436,129 + RR42_RS11370 0.86 +0.1
2,436,267 + -1.5
2,436,298 + -0.8
2,436,346 + -0.1
2,436,369 + -0.6
2,436,369 + -0.3
2,436,369 + -0.2
2,436,369 + +0.0
2,436,369 + -0.2
2,436,369 + +0.2
2,436,369 + +0.5
2,436,369 + -1.5
2,436,369 + -0.4
2,436,370 - -1.0
2,436,370 - -0.2
2,436,370 - -1.9
2,436,370 - -0.1
2,436,449 + +1.2
2,436,449 + -0.3
2,436,594 + +0.1
2,437,673 + -1.5
2,437,674 - +0.4
2,437,685 + -0.2
2,437,685 + -2.1
2,437,686 - +1.6
2,437,686 - +0.2
2,437,686 - +0.1
2,438,167 - +1.2

Or see this region's nucleotide sequence