Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09670

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09665 and RR42_RS09670 are separated by 717 nucleotides RR42_RS09665: RR42_RS09665 - hypothetical protein, at 2,050,327 to 2,052,003 _RS09665 RR42_RS09670: RR42_RS09670 - hypothetical protein, at 2,052,721 to 2,053,122 _RS09670 Position (kb) 2052 2053 2054Strain fitness (log2 ratio) -2 -1 0 1at 2052.204 kb on - strandat 2052.383 kb on + strandat 2052.390 kb on - strandat 2052.456 kb on - strandat 2052.456 kb on - strandat 2052.513 kb on - strandat 2052.719 kb on + strandat 2052.722 kb on + strandat 2052.723 kb on - strandat 2052.792 kb on + strand, within RR42_RS09670at 2052.793 kb on - strand, within RR42_RS09670at 2052.793 kb on - strand, within RR42_RS09670at 2052.793 kb on - strand, within RR42_RS09670at 2052.793 kb on - strand, within RR42_RS09670at 2052.861 kb on + strand, within RR42_RS09670at 2052.862 kb on - strand, within RR42_RS09670at 2052.923 kb on - strand, within RR42_RS09670at 2052.966 kb on + strand, within RR42_RS09670at 2052.973 kb on - strand, within RR42_RS09670at 2053.101 kb on + strandat 2053.102 kb on - strandat 2053.103 kb on + strandat 2053.103 kb on + strandat 2053.103 kb on + strandat 2053.104 kb on - strandat 2053.104 kb on - strandat 2053.192 kb on + strandat 2053.192 kb on + strandat 2053.193 kb on - strandat 2053.193 kb on - strandat 2053.194 kb on + strandat 2053.243 kb on + strandat 2053.244 kb on - strandat 2053.274 kb on + strandat 2053.275 kb on - strandat 2053.325 kb on + strandat 2053.326 kb on - strandat 2053.384 kb on - strandat 2053.384 kb on - strandat 2053.481 kb on + strandat 2053.482 kb on - strandat 2053.482 kb on - strandat 2053.517 kb on - strandat 2053.565 kb on + strandat 2053.565 kb on + strandat 2053.566 kb on - strandat 2053.566 kb on - strandat 2053.676 kb on - strandat 2053.676 kb on - strandat 2053.756 kb on - strandat 2053.859 kb on + strandat 2053.860 kb on - strandat 2053.860 kb on - strandat 2053.912 kb on + strandat 2053.967 kb on + strandat 2053.972 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,052,204 - +0.8
2,052,383 + +0.1
2,052,390 - +1.2
2,052,456 - -0.3
2,052,456 - -1.6
2,052,513 - +0.2
2,052,719 + -0.4
2,052,722 + -1.3
2,052,723 - +0.8
2,052,792 + RR42_RS09670 0.18 -0.4
2,052,793 - RR42_RS09670 0.18 -0.5
2,052,793 - RR42_RS09670 0.18 -2.0
2,052,793 - RR42_RS09670 0.18 -1.3
2,052,793 - RR42_RS09670 0.18 -1.4
2,052,861 + RR42_RS09670 0.35 -1.2
2,052,862 - RR42_RS09670 0.35 -1.2
2,052,923 - RR42_RS09670 0.50 -1.2
2,052,966 + RR42_RS09670 0.61 -1.3
2,052,973 - RR42_RS09670 0.63 +0.2
2,053,101 + +1.2
2,053,102 - +0.5
2,053,103 + -0.6
2,053,103 + -0.9
2,053,103 + +0.2
2,053,104 - -0.4
2,053,104 - -0.2
2,053,192 + +0.0
2,053,192 + +0.8
2,053,193 - -1.3
2,053,193 - +0.8
2,053,194 + +0.2
2,053,243 + -1.2
2,053,244 - -0.9
2,053,274 + -0.2
2,053,275 - -0.6
2,053,325 + +0.4
2,053,326 - +0.2
2,053,384 - +0.9
2,053,384 - -0.4
2,053,481 + +0.2
2,053,482 - -0.5
2,053,482 - +0.3
2,053,517 - +0.4
2,053,565 + -0.2
2,053,565 + +0.3
2,053,566 - +1.2
2,053,566 - +0.4
2,053,676 - +0.8
2,053,676 - -0.4
2,053,756 - -0.7
2,053,859 + -0.2
2,053,860 - +0.4
2,053,860 - -0.0
2,053,912 + +0.0
2,053,967 + +0.2
2,053,972 - -0.1

Or see this region's nucleotide sequence