Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07150 and RR42_RS07155 are separated by 72 nucleotides RR42_RS07155 and RR42_RS07160 are separated by 59 nucleotides RR42_RS07160 and RR42_RS07165 are separated by 1 nucleotides RR42_RS07165 and RR42_RS07170 are separated by 21 nucleotides RR42_RS07170 and RR42_RS07175 overlap by 4 nucleotides RR42_RS07175 and RR42_RS07180 overlap by 1 nucleotides
RR42_RS07150: RR42_RS07150 - hypothetical protein, at 1,532,858 to 1,533,571
_RS07150
RR42_RS07155: RR42_RS07155 - hypothetical protein, at 1,533,644 to 1,534,405
_RS07155
RR42_RS07160: RR42_RS07160 - hypothetical protein, at 1,534,465 to 1,535,247
_RS07160
RR42_RS07165: RR42_RS07165 - hypothetical protein, at 1,535,249 to 1,535,467
_RS07165
RR42_RS07170: RR42_RS07170 - hypothetical protein, at 1,535,489 to 1,535,800
_RS07170
RR42_RS07175: RR42_RS07175 - hypothetical protein, at 1,535,797 to 1,536,120
_RS07175
RR42_RS07180: RR42_RS07180 - hypothetical protein, at 1,536,120 to 1,536,788
_RS07180
Position (kb) 1534
1535
1536 Strain fitness (log2 ratio) -2
-1
0
1 at 1533.633 kb on - strand at 1533.640 kb on - strand at 1533.640 kb on - strand at 1533.719 kb on + strand at 1533.720 kb on - strand at 1533.941 kb on - strand, within RR42_RS07155 at 1534.281 kb on - strand, within RR42_RS07155 at 1534.344 kb on - strand at 1534.429 kb on + strand at 1534.462 kb on - strand at 1534.690 kb on + strand, within RR42_RS07160 at 1534.756 kb on + strand, within RR42_RS07160 at 1534.756 kb on + strand, within RR42_RS07160 at 1534.757 kb on - strand, within RR42_RS07160 at 1534.809 kb on - strand, within RR42_RS07160 at 1535.052 kb on - strand, within RR42_RS07160 at 1535.552 kb on - strand, within RR42_RS07170 at 1535.552 kb on - strand, within RR42_RS07170 at 1535.552 kb on - strand, within RR42_RS07170 at 1535.647 kb on + strand, within RR42_RS07170 at 1536.098 kb on + strand at 1536.152 kb on - strand at 1536.152 kb on - strand at 1536.152 kb on - strand at 1536.201 kb on + strand, within RR42_RS07180 at 1536.234 kb on + strand, within RR42_RS07180
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 1,533,633 - +0.0 1,533,640 - +0.0 1,533,640 - +0.3 1,533,719 + -0.7 1,533,720 - +0.4 1,533,941 - RR42_RS07155 0.39 +0.7 1,534,281 - RR42_RS07155 0.84 -0.1 1,534,344 - +1.0 1,534,429 + -2.3 1,534,462 - +0.5 1,534,690 + RR42_RS07160 0.29 -1.3 1,534,756 + RR42_RS07160 0.37 -0.8 1,534,756 + RR42_RS07160 0.37 +0.6 1,534,757 - RR42_RS07160 0.37 -1.5 1,534,809 - RR42_RS07160 0.44 -0.4 1,535,052 - RR42_RS07160 0.75 -0.9 1,535,552 - RR42_RS07170 0.20 -0.4 1,535,552 - RR42_RS07170 0.20 +1.0 1,535,552 - RR42_RS07170 0.20 -1.5 1,535,647 + RR42_RS07170 0.51 -0.5 1,536,098 + +0.3 1,536,152 - -0.4 1,536,152 - +0.9 1,536,152 - +1.5 1,536,201 + RR42_RS07180 0.12 -0.2 1,536,234 + RR42_RS07180 0.17 -0.1
Or see this region's nucleotide sequence