Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06860 and RR42_RS06865 are separated by 701 nucleotides RR42_RS06865 and RR42_RS06870 are separated by 211 nucleotides RR42_RS06870 and RR42_RS06875 are separated by 74 nucleotides RR42_RS06875 and RR42_RS06880 are separated by 18 nucleotides
RR42_RS06860: RR42_RS06860 - hypothetical protein, at 1,481,677 to 1,481,871
_RS06860
RR42_RS06865: RR42_RS06865 - hypothetical protein, at 1,482,573 to 1,482,908
_RS06865
RR42_RS06870: RR42_RS06870 - hypothetical protein, at 1,483,120 to 1,483,488
_RS06870
RR42_RS06875: RR42_RS06875 - hypothetical protein, at 1,483,563 to 1,483,889
_RS06875
RR42_RS06880: RR42_RS06880 - hypothetical protein, at 1,483,908 to 1,484,123
_RS06880
Position (kb)
1482
1483 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1481.611 kb on - strand at 1481.611 kb on - strand at 1481.611 kb on - strand at 1481.669 kb on + strand at 1481.811 kb on - strand, within RR42_RS06860 at 1481.811 kb on - strand, within RR42_RS06860 at 1481.858 kb on - strand at 1481.908 kb on - strand at 1481.966 kb on - strand at 1482.033 kb on - strand at 1482.033 kb on - strand at 1482.033 kb on - strand at 1482.038 kb on - strand at 1482.046 kb on - strand at 1482.046 kb on - strand at 1482.183 kb on - strand at 1482.404 kb on - strand at 1482.610 kb on - strand, within RR42_RS06865 at 1482.610 kb on - strand, within RR42_RS06865 at 1482.872 kb on - strand, within RR42_RS06865 at 1483.020 kb on - strand at 1483.020 kb on - strand at 1483.242 kb on - strand, within RR42_RS06870 at 1483.242 kb on - strand, within RR42_RS06870 at 1483.297 kb on + strand, within RR42_RS06870 at 1483.329 kb on - strand, within RR42_RS06870 at 1483.514 kb on - strand at 1483.514 kb on - strand at 1483.514 kb on - strand at 1483.514 kb on - strand at 1483.591 kb on - strand at 1483.591 kb on - strand at 1483.622 kb on - strand, within RR42_RS06875 at 1483.638 kb on + strand, within RR42_RS06875 at 1483.858 kb on - strand at 1483.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 1,481,611 - +0.3 1,481,611 - -0.5 1,481,611 - +1.2 1,481,669 + -3.8 1,481,811 - RR42_RS06860 0.69 -1.3 1,481,811 - RR42_RS06860 0.69 -0.5 1,481,858 - -0.9 1,481,908 - -0.6 1,481,966 - +0.1 1,482,033 - -2.5 1,482,033 - +0.4 1,482,033 - +2.1 1,482,038 - -0.2 1,482,046 - -0.3 1,482,046 - -0.7 1,482,183 - -0.2 1,482,404 - +0.9 1,482,610 - RR42_RS06865 0.11 +0.6 1,482,610 - RR42_RS06865 0.11 +0.8 1,482,872 - RR42_RS06865 0.89 +0.5 1,483,020 - +0.1 1,483,020 - +0.2 1,483,242 - RR42_RS06870 0.33 -1.4 1,483,242 - RR42_RS06870 0.33 -0.5 1,483,297 + RR42_RS06870 0.48 -0.5 1,483,329 - RR42_RS06870 0.57 -0.1 1,483,514 - -1.2 1,483,514 - +0.6 1,483,514 - -0.7 1,483,514 - +1.8 1,483,591 - +1.9 1,483,591 - +0.1 1,483,622 - RR42_RS06875 0.18 +0.2 1,483,638 + RR42_RS06875 0.23 -1.5 1,483,858 - -0.8 1,483,858 - -0.7
Or see this region's nucleotide sequence