Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06865

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06860 and RR42_RS06865 are separated by 701 nucleotidesRR42_RS06865 and RR42_RS06870 are separated by 211 nucleotidesRR42_RS06870 and RR42_RS06875 are separated by 74 nucleotidesRR42_RS06875 and RR42_RS06880 are separated by 18 nucleotides RR42_RS06860: RR42_RS06860 - hypothetical protein, at 1,481,677 to 1,481,871 _RS06860 RR42_RS06865: RR42_RS06865 - hypothetical protein, at 1,482,573 to 1,482,908 _RS06865 RR42_RS06870: RR42_RS06870 - hypothetical protein, at 1,483,120 to 1,483,488 _RS06870 RR42_RS06875: RR42_RS06875 - hypothetical protein, at 1,483,563 to 1,483,889 _RS06875 RR42_RS06880: RR42_RS06880 - hypothetical protein, at 1,483,908 to 1,484,123 _RS06880 Position (kb) 1482 1483Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1481.611 kb on - strandat 1481.611 kb on - strandat 1481.611 kb on - strandat 1481.669 kb on + strandat 1481.811 kb on - strand, within RR42_RS06860at 1481.811 kb on - strand, within RR42_RS06860at 1481.858 kb on - strandat 1481.908 kb on - strandat 1481.966 kb on - strandat 1482.033 kb on - strandat 1482.033 kb on - strandat 1482.033 kb on - strandat 1482.038 kb on - strandat 1482.046 kb on - strandat 1482.046 kb on - strandat 1482.183 kb on - strandat 1482.404 kb on - strandat 1482.610 kb on - strand, within RR42_RS06865at 1482.610 kb on - strand, within RR42_RS06865at 1482.872 kb on - strand, within RR42_RS06865at 1483.020 kb on - strandat 1483.020 kb on - strandat 1483.242 kb on - strand, within RR42_RS06870at 1483.242 kb on - strand, within RR42_RS06870at 1483.297 kb on + strand, within RR42_RS06870at 1483.329 kb on - strand, within RR42_RS06870at 1483.514 kb on - strandat 1483.514 kb on - strandat 1483.514 kb on - strandat 1483.514 kb on - strandat 1483.591 kb on - strandat 1483.591 kb on - strandat 1483.622 kb on - strand, within RR42_RS06875at 1483.638 kb on + strand, within RR42_RS06875at 1483.858 kb on - strandat 1483.858 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,481,611 - +0.3
1,481,611 - -0.5
1,481,611 - +1.2
1,481,669 + -3.8
1,481,811 - RR42_RS06860 0.69 -1.3
1,481,811 - RR42_RS06860 0.69 -0.5
1,481,858 - -0.9
1,481,908 - -0.6
1,481,966 - +0.1
1,482,033 - -2.5
1,482,033 - +0.4
1,482,033 - +2.1
1,482,038 - -0.2
1,482,046 - -0.3
1,482,046 - -0.7
1,482,183 - -0.2
1,482,404 - +0.9
1,482,610 - RR42_RS06865 0.11 +0.6
1,482,610 - RR42_RS06865 0.11 +0.8
1,482,872 - RR42_RS06865 0.89 +0.5
1,483,020 - +0.1
1,483,020 - +0.2
1,483,242 - RR42_RS06870 0.33 -1.4
1,483,242 - RR42_RS06870 0.33 -0.5
1,483,297 + RR42_RS06870 0.48 -0.5
1,483,329 - RR42_RS06870 0.57 -0.1
1,483,514 - -1.2
1,483,514 - +0.6
1,483,514 - -0.7
1,483,514 - +1.8
1,483,591 - +1.9
1,483,591 - +0.1
1,483,622 - RR42_RS06875 0.18 +0.2
1,483,638 + RR42_RS06875 0.23 -1.5
1,483,858 - -0.8
1,483,858 - -0.7

Or see this region's nucleotide sequence