Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03210

Experiment: L-Leucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS03200 and RR42_RS03205 are separated by 437 nucleotidesRR42_RS03205 and RR42_RS03210 are separated by 70 nucleotidesRR42_RS03210 and RR42_RS03215 are separated by 162 nucleotides RR42_RS03200: RR42_RS03200 - phosphoglycerate kinase, at 708,499 to 709,707 _RS03200 RR42_RS03205: RR42_RS03205 - hypothetical protein, at 710,145 to 710,576 _RS03205 RR42_RS03210: RR42_RS03210 - pyruvate kinase, at 710,647 to 712,083 _RS03210 RR42_RS03215: RR42_RS03215 - fructose-bisphosphate aldolase, at 712,246 to 713,310 _RS03215 Position (kb) 710 711 712 713Strain fitness (log2 ratio) -1 0 1 2at 709.938 kb on + strandat 709.938 kb on + strandat 710.778 kb on + strandat 711.056 kb on + strand, within RR42_RS03210at 711.056 kb on + strand, within RR42_RS03210at 711.056 kb on + strand, within RR42_RS03210at 711.205 kb on + strand, within RR42_RS03210at 711.205 kb on + strand, within RR42_RS03210at 711.205 kb on + strand, within RR42_RS03210at 711.205 kb on + strand, within RR42_RS03210at 711.205 kb on + strand, within RR42_RS03210at 711.205 kb on + strand, within RR42_RS03210at 711.760 kb on + strand, within RR42_RS03210at 711.773 kb on + strand, within RR42_RS03210at 711.850 kb on + strand, within RR42_RS03210at 711.850 kb on + strand, within RR42_RS03210at 711.850 kb on + strand, within RR42_RS03210at 711.968 kb on + strandat 711.968 kb on + strandat 711.968 kb on + strandat 711.968 kb on + strandat 711.968 kb on + strandat 711.968 kb on + strandat 711.968 kb on + strandat 711.968 kb on + strandat 712.005 kb on + strandat 712.053 kb on + strandat 712.084 kb on + strandat 712.084 kb on + strandat 712.138 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
remove
709,938 + +0.6
709,938 + -0.8
710,778 + -0.2
711,056 + RR42_RS03210 0.28 +0.6
711,056 + RR42_RS03210 0.28 -1.2
711,056 + RR42_RS03210 0.28 +1.1
711,205 + RR42_RS03210 0.39 +0.8
711,205 + RR42_RS03210 0.39 +1.2
711,205 + RR42_RS03210 0.39 -0.6
711,205 + RR42_RS03210 0.39 +0.5
711,205 + RR42_RS03210 0.39 +0.8
711,205 + RR42_RS03210 0.39 +1.4
711,760 + RR42_RS03210 0.77 -0.8
711,773 + RR42_RS03210 0.78 +0.3
711,850 + RR42_RS03210 0.84 +1.1
711,850 + RR42_RS03210 0.84 -0.1
711,850 + RR42_RS03210 0.84 +0.3
711,968 + -0.5
711,968 + +0.6
711,968 + +0.6
711,968 + -0.9
711,968 + -0.3
711,968 + -0.9
711,968 + -0.0
711,968 + -0.8
712,005 + -0.1
712,053 + -0.7
712,084 + -1.4
712,084 + -0.2
712,138 + +2.4

Or see this region's nucleotide sequence