Experiment: Chloramphenicol 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1944 and Ga0059261_1945 are separated by 93 nucleotides Ga0059261_1945 and Ga0059261_1946 overlap by 4 nucleotides Ga0059261_1946 and Ga0059261_1947 overlap by 4 nucleotides
Ga0059261_1944: Ga0059261_1944 - GTP-binding protein Era, at 2,053,496 to 2,054,398
_1944
Ga0059261_1945: Ga0059261_1945 - Ketosteroid isomerase-related protein, at 2,054,492 to 2,054,926
_1945
Ga0059261_1946: Ga0059261_1946 - ribonuclease III, bacterial, at 2,054,923 to 2,055,588
_1946
Ga0059261_1947: Ga0059261_1947 - signal peptidase I, bacterial type, at 2,055,585 to 2,056,451
_1947
Position (kb)
2054
2055 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2053.497 kb on + strand at 2053.498 kb on - strand at 2053.498 kb on - strand at 2053.527 kb on + strand at 2054.465 kb on + strand at 2054.795 kb on + strand, within Ga0059261_1945 at 2054.796 kb on - strand, within Ga0059261_1945 at 2054.796 kb on - strand, within Ga0059261_1945 at 2054.796 kb on - strand, within Ga0059261_1945 at 2054.807 kb on + strand, within Ga0059261_1945 at 2054.807 kb on + strand, within Ga0059261_1945 at 2054.808 kb on - strand, within Ga0059261_1945 at 2054.808 kb on - strand, within Ga0059261_1945 at 2054.808 kb on - strand, within Ga0059261_1945 at 2054.808 kb on - strand, within Ga0059261_1945 at 2054.858 kb on + strand, within Ga0059261_1945 at 2054.858 kb on + strand, within Ga0059261_1945 at 2054.858 kb on + strand, within Ga0059261_1945 at 2054.858 kb on + strand, within Ga0059261_1945 at 2054.858 kb on + strand, within Ga0059261_1945 at 2054.858 kb on + strand, within Ga0059261_1945 at 2054.858 kb on + strand, within Ga0059261_1945 at 2054.858 kb on + strand, within Ga0059261_1945 at 2054.858 kb on + strand, within Ga0059261_1945 at 2054.858 kb on + strand, within Ga0059261_1945 at 2054.859 kb on - strand, within Ga0059261_1945 at 2054.859 kb on - strand, within Ga0059261_1945 at 2054.859 kb on - strand, within Ga0059261_1945 at 2054.859 kb on - strand, within Ga0059261_1945 at 2054.860 kb on + strand, within Ga0059261_1945 at 2054.860 kb on + strand, within Ga0059261_1945 at 2054.860 kb on + strand, within Ga0059261_1945 at 2054.860 kb on + strand, within Ga0059261_1945 at 2054.860 kb on + strand at 2054.860 kb on + strand, within Ga0059261_1945 at 2054.860 kb on + strand at 2054.860 kb on + strand, within Ga0059261_1945 at 2054.861 kb on - strand, within Ga0059261_1945 at 2054.861 kb on - strand, within Ga0059261_1945 at 2054.861 kb on - strand, within Ga0059261_1945 at 2054.861 kb on - strand, within Ga0059261_1945 at 2054.861 kb on - strand, within Ga0059261_1945 at 2054.861 kb on - strand, within Ga0059261_1945 at 2054.861 kb on - strand, within Ga0059261_1945 at 2054.866 kb on + strand, within Ga0059261_1945 at 2054.867 kb on - strand, within Ga0059261_1945 at 2054.924 kb on + strand at 2054.924 kb on + strand at 2054.924 kb on + strand at 2054.924 kb on + strand at 2054.924 kb on + strand at 2054.925 kb on - strand at 2054.925 kb on - strand at 2054.925 kb on - strand at 2054.925 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0025 mg/ml remove 2,053,497 + +1.4 2,053,498 - -1.0 2,053,498 - +0.4 2,053,527 + +0.1 2,054,465 + -0.5 2,054,795 + Ga0059261_1945 0.70 -0.1 2,054,796 - Ga0059261_1945 0.70 -0.1 2,054,796 - Ga0059261_1945 0.70 -1.2 2,054,796 - Ga0059261_1945 0.70 +2.4 2,054,807 + Ga0059261_1945 0.72 +0.6 2,054,807 + Ga0059261_1945 0.72 -1.2 2,054,808 - Ga0059261_1945 0.73 -0.8 2,054,808 - Ga0059261_1945 0.73 +0.7 2,054,808 - Ga0059261_1945 0.73 +0.4 2,054,808 - Ga0059261_1945 0.73 -0.1 2,054,858 + Ga0059261_1945 0.84 -0.6 2,054,858 + Ga0059261_1945 0.84 +0.1 2,054,858 + Ga0059261_1945 0.84 +0.0 2,054,858 + Ga0059261_1945 0.84 -0.8 2,054,858 + Ga0059261_1945 0.84 -0.3 2,054,858 + Ga0059261_1945 0.84 +0.0 2,054,858 + Ga0059261_1945 0.84 -0.4 2,054,858 + Ga0059261_1945 0.84 -0.4 2,054,858 + Ga0059261_1945 0.84 -1.0 2,054,858 + Ga0059261_1945 0.84 +0.2 2,054,859 - Ga0059261_1945 0.84 -0.2 2,054,859 - Ga0059261_1945 0.84 -0.2 2,054,859 - Ga0059261_1945 0.84 -0.5 2,054,859 - Ga0059261_1945 0.84 +0.1 2,054,860 + Ga0059261_1945 0.85 -1.2 2,054,860 + Ga0059261_1945 0.85 +0.0 2,054,860 + Ga0059261_1945 0.85 +0.0 2,054,860 + Ga0059261_1945 0.85 +1.0 2,054,860 + +0.5 2,054,860 + Ga0059261_1945 0.85 -0.5 2,054,860 + +2.4 2,054,860 + Ga0059261_1945 0.85 +1.0 2,054,861 - Ga0059261_1945 0.85 -0.6 2,054,861 - Ga0059261_1945 0.85 -1.1 2,054,861 - Ga0059261_1945 0.85 +0.9 2,054,861 - Ga0059261_1945 0.85 -0.4 2,054,861 - Ga0059261_1945 0.85 -0.5 2,054,861 - Ga0059261_1945 0.85 +0.2 2,054,861 - Ga0059261_1945 0.85 +0.4 2,054,866 + Ga0059261_1945 0.86 +0.4 2,054,867 - Ga0059261_1945 0.86 -2.0 2,054,924 + -0.9 2,054,924 + -0.2 2,054,924 + -0.7 2,054,924 + -0.3 2,054,924 + -0.3 2,054,925 - -0.4 2,054,925 - +1.2 2,054,925 - -0.4 2,054,925 - +0.0
Or see this region's nucleotide sequence