Experiment: Chloramphenicol 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0618 and Ga0059261_0619 overlap by 8 nucleotides Ga0059261_0619 and Ga0059261_0620 are separated by 449 nucleotides
Ga0059261_0618: Ga0059261_0618 - Signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 656,356 to 658,143
_0618
Ga0059261_0619: Ga0059261_0619 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 658,136 to 659,476
_0619
Ga0059261_0620: Ga0059261_0620 - Outer membrane cobalamin receptor protein, at 659,926 to 661,821
_0620
Position (kb) 658
659
660 Strain fitness (log2 ratio) -2
-1
0
1 at 657.819 kb on - strand, within Ga0059261_0618 at 658.194 kb on + strand at 658.194 kb on + strand at 658.195 kb on - strand at 658.195 kb on - strand at 658.195 kb on - strand at 658.195 kb on - strand at 658.195 kb on - strand at 658.195 kb on - strand at 658.321 kb on + strand, within Ga0059261_0619 at 658.321 kb on + strand, within Ga0059261_0619 at 658.322 kb on - strand, within Ga0059261_0619 at 658.322 kb on - strand, within Ga0059261_0619 at 658.322 kb on - strand, within Ga0059261_0619 at 658.674 kb on + strand at 658.674 kb on + strand, within Ga0059261_0619 at 658.865 kb on - strand, within Ga0059261_0619 at 659.036 kb on + strand, within Ga0059261_0619 at 659.036 kb on + strand, within Ga0059261_0619 at 659.036 kb on + strand, within Ga0059261_0619 at 659.318 kb on + strand, within Ga0059261_0619 at 659.318 kb on + strand, within Ga0059261_0619 at 659.319 kb on - strand, within Ga0059261_0619 at 659.319 kb on - strand, within Ga0059261_0619 at 659.411 kb on + strand at 659.411 kb on + strand at 659.412 kb on - strand at 659.510 kb on - strand at 659.510 kb on - strand at 659.639 kb on + strand at 659.639 kb on + strand at 659.639 kb on + strand at 659.639 kb on + strand at 659.640 kb on - strand at 659.640 kb on - strand at 659.640 kb on - strand at 659.640 kb on - strand at 659.956 kb on + strand at 659.956 kb on + strand at 659.956 kb on + strand at 659.956 kb on + strand at 659.957 kb on - strand at 659.957 kb on - strand at 659.957 kb on - strand at 659.962 kb on + strand at 659.963 kb on - strand at 659.963 kb on - strand at 660.241 kb on + strand, within Ga0059261_0620 at 660.241 kb on + strand, within Ga0059261_0620 at 660.241 kb on + strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.292 kb on + strand, within Ga0059261_0620 at 660.292 kb on + strand, within Ga0059261_0620 at 660.292 kb on + strand, within Ga0059261_0620 at 660.364 kb on + strand, within Ga0059261_0620 at 660.364 kb on + strand, within Ga0059261_0620 at 660.452 kb on - strand, within Ga0059261_0620 at 660.452 kb on - strand, within Ga0059261_0620 at 660.460 kb on + strand, within Ga0059261_0620 at 660.460 kb on + strand, within Ga0059261_0620 at 660.460 kb on + strand, within Ga0059261_0620 at 660.460 kb on + strand, within Ga0059261_0620
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0025 mg/ml remove 657,819 - Ga0059261_0618 0.82 -1.5 658,194 + +0.4 658,194 + +0.2 658,195 - -0.8 658,195 - -0.4 658,195 - +1.7 658,195 - +0.7 658,195 - -0.7 658,195 - -0.3 658,321 + Ga0059261_0619 0.14 +0.0 658,321 + Ga0059261_0619 0.14 -1.2 658,322 - Ga0059261_0619 0.14 -0.3 658,322 - Ga0059261_0619 0.14 +0.3 658,322 - Ga0059261_0619 0.14 -1.5 658,674 + +0.4 658,674 + Ga0059261_0619 0.40 -0.6 658,865 - Ga0059261_0619 0.54 -0.1 659,036 + Ga0059261_0619 0.67 -0.3 659,036 + Ga0059261_0619 0.67 +1.6 659,036 + Ga0059261_0619 0.67 +0.1 659,318 + Ga0059261_0619 0.88 -1.8 659,318 + Ga0059261_0619 0.88 -0.6 659,319 - Ga0059261_0619 0.88 -0.8 659,319 - Ga0059261_0619 0.88 -1.0 659,411 + -0.5 659,411 + -0.0 659,412 - -1.4 659,510 - -0.0 659,510 - -1.3 659,639 + +0.1 659,639 + +0.6 659,639 + +0.1 659,639 + -0.7 659,640 - +0.7 659,640 - -1.3 659,640 - -2.2 659,640 - -1.0 659,956 + +1.0 659,956 + -0.7 659,956 + -0.3 659,956 + +1.0 659,957 - -0.3 659,957 - -0.7 659,957 - -2.4 659,962 + -1.9 659,963 - -0.6 659,963 - +0.4 660,241 + Ga0059261_0620 0.17 -1.7 660,241 + Ga0059261_0620 0.17 +0.6 660,241 + Ga0059261_0620 0.17 -0.4 660,242 - Ga0059261_0620 0.17 -0.6 660,242 - Ga0059261_0620 0.17 +0.1 660,242 - Ga0059261_0620 0.17 +1.0 660,242 - Ga0059261_0620 0.17 -0.6 660,242 - Ga0059261_0620 0.17 +0.8 660,242 - Ga0059261_0620 0.17 +0.2 660,292 + Ga0059261_0620 0.19 -1.5 660,292 + Ga0059261_0620 0.19 -0.3 660,292 + Ga0059261_0620 0.19 -1.4 660,364 + Ga0059261_0620 0.23 +0.6 660,364 + Ga0059261_0620 0.23 -0.3 660,452 - Ga0059261_0620 0.28 +0.7 660,452 - Ga0059261_0620 0.28 -0.0 660,460 + Ga0059261_0620 0.28 +0.6 660,460 + Ga0059261_0620 0.28 -1.7 660,460 + Ga0059261_0620 0.28 -0.0 660,460 + Ga0059261_0620 0.28 -0.1
Or see this region's nucleotide sequence