Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0208

Experiment: Chloramphenicol 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0206 and Ga0059261_0207 overlap by 1 nucleotidesGa0059261_0207 and Ga0059261_0208 are separated by 1 nucleotidesGa0059261_0208 and Ga0059261_0209 are separated by 41 nucleotides Ga0059261_0206: Ga0059261_0206 - adenosine deaminase, at 192,978 to 193,994 _0206 Ga0059261_0207: Ga0059261_0207 - Predicted phosphoribosyltransferases, at 193,994 to 194,512 _0207 Ga0059261_0208: Ga0059261_0208 - Response regulator receiver domain, at 194,514 to 194,864 _0208 Ga0059261_0209: Ga0059261_0209 - His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, at 194,906 to 197,293 _0209 Position (kb) 194 195Strain fitness (log2 ratio) -1 0 1 2at 193.596 kb on + strand, within Ga0059261_0206at 193.596 kb on + strand, within Ga0059261_0206at 193.596 kb on + strand, within Ga0059261_0206at 193.596 kb on + strand, within Ga0059261_0206at 193.596 kb on + strand, within Ga0059261_0206at 193.596 kb on + strand, within Ga0059261_0206at 193.596 kb on + strand, within Ga0059261_0206at 193.597 kb on - strand, within Ga0059261_0206at 193.597 kb on - strand, within Ga0059261_0206at 193.597 kb on - strand, within Ga0059261_0206at 193.597 kb on - strand, within Ga0059261_0206at 193.751 kb on + strand, within Ga0059261_0206at 193.752 kb on - strand, within Ga0059261_0206at 193.752 kb on - strand, within Ga0059261_0206at 193.800 kb on - strand, within Ga0059261_0206at 193.836 kb on + strand, within Ga0059261_0206at 193.836 kb on + strand, within Ga0059261_0206at 193.837 kb on - strand, within Ga0059261_0206at 193.837 kb on - strand, within Ga0059261_0206at 193.837 kb on - strand, within Ga0059261_0206at 193.919 kb on + strandat 193.956 kb on + strandat 194.132 kb on + strand, within Ga0059261_0207at 194.132 kb on + strand, within Ga0059261_0207at 194.132 kb on + strand, within Ga0059261_0207at 194.133 kb on - strand, within Ga0059261_0207at 194.133 kb on - strand, within Ga0059261_0207at 194.230 kb on + strand, within Ga0059261_0207at 194.266 kb on + strand, within Ga0059261_0207at 194.266 kb on + strand, within Ga0059261_0207at 194.266 kb on + strand, within Ga0059261_0207at 194.267 kb on - strand, within Ga0059261_0207at 194.267 kb on - strand, within Ga0059261_0207at 194.390 kb on + strand, within Ga0059261_0207at 194.390 kb on + strand, within Ga0059261_0207at 194.391 kb on - strand, within Ga0059261_0207at 194.391 kb on - strand, within Ga0059261_0207at 194.515 kb on + strandat 194.515 kb on + strandat 194.515 kb on + strandat 194.515 kb on + strandat 194.516 kb on - strandat 194.797 kb on + strand, within Ga0059261_0208at 194.797 kb on + strand, within Ga0059261_0208at 194.797 kb on + strand, within Ga0059261_0208at 194.798 kb on - strand, within Ga0059261_0208at 194.798 kb on - strand, within Ga0059261_0208at 194.852 kb on + strandat 194.853 kb on - strandat 194.853 kb on - strandat 194.853 kb on - strandat 194.877 kb on - strandat 194.907 kb on + strandat 194.907 kb on + strandat 194.908 kb on - strandat 194.908 kb on - strandat 195.190 kb on + strand, within Ga0059261_0209at 195.190 kb on + strand, within Ga0059261_0209at 195.190 kb on + strand, within Ga0059261_0209at 195.190 kb on + strand, within Ga0059261_0209at 195.190 kb on + strand, within Ga0059261_0209at 195.190 kb on + strand, within Ga0059261_0209at 195.190 kb on + strand, within Ga0059261_0209at 195.190 kb on + strand, within Ga0059261_0209at 195.190 kb on + strand, within Ga0059261_0209at 195.191 kb on - strand, within Ga0059261_0209at 195.192 kb on + strand, within Ga0059261_0209at 195.192 kb on + strand, within Ga0059261_0209at 195.192 kb on + strand, within Ga0059261_0209at 195.192 kb on + strand, within Ga0059261_0209at 195.192 kb on + strand, within Ga0059261_0209at 195.193 kb on - strand, within Ga0059261_0209at 195.193 kb on - strand, within Ga0059261_0209at 195.193 kb on - strand, within Ga0059261_0209at 195.193 kb on - strand, within Ga0059261_0209at 195.193 kb on - strand, within Ga0059261_0209at 195.345 kb on + strand, within Ga0059261_0209at 195.345 kb on + strand, within Ga0059261_0209at 195.345 kb on + strand, within Ga0059261_0209at 195.345 kb on + strand, within Ga0059261_0209at 195.345 kb on + strand, within Ga0059261_0209at 195.345 kb on + strand, within Ga0059261_0209at 195.346 kb on - strand, within Ga0059261_0209at 195.346 kb on - strand, within Ga0059261_0209at 195.346 kb on - strandat 195.346 kb on - strand, within Ga0059261_0209at 195.346 kb on - strand, within Ga0059261_0209at 195.346 kb on - strand, within Ga0059261_0209at 195.346 kb on - strand, within Ga0059261_0209at 195.420 kb on + strand, within Ga0059261_0209at 195.420 kb on + strand, within Ga0059261_0209at 195.420 kb on + strand, within Ga0059261_0209at 195.421 kb on - strand, within Ga0059261_0209at 195.421 kb on - strand, within Ga0059261_0209at 195.421 kb on - strand, within Ga0059261_0209at 195.421 kb on - strand, within Ga0059261_0209at 195.487 kb on + strand, within Ga0059261_0209at 195.487 kb on + strand, within Ga0059261_0209at 195.487 kb on + strand, within Ga0059261_0209at 195.487 kb on + strand, within Ga0059261_0209at 195.488 kb on - strand, within Ga0059261_0209at 195.488 kb on - strand, within Ga0059261_0209at 195.488 kb on - strand, within Ga0059261_0209at 195.488 kb on - strand, within Ga0059261_0209at 195.488 kb on - strand, within Ga0059261_0209at 195.545 kb on - strand, within Ga0059261_0209at 195.545 kb on - strandat 195.546 kb on + strand, within Ga0059261_0209at 195.546 kb on + strandat 195.546 kb on + strand, within Ga0059261_0209at 195.546 kb on + strand, within Ga0059261_0209at 195.547 kb on - strand, within Ga0059261_0209at 195.547 kb on - strand, within Ga0059261_0209at 195.547 kb on - strand, within Ga0059261_0209at 195.547 kb on - strand, within Ga0059261_0209at 195.547 kb on - strand, within Ga0059261_0209

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0025 mg/ml
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193,596 + Ga0059261_0206 0.61 -0.9
193,596 + Ga0059261_0206 0.61 -0.4
193,596 + Ga0059261_0206 0.61 +0.7
193,596 + Ga0059261_0206 0.61 -0.3
193,596 + Ga0059261_0206 0.61 -0.3
193,596 + Ga0059261_0206 0.61 -1.6
193,596 + Ga0059261_0206 0.61 +0.5
193,597 - Ga0059261_0206 0.61 -0.1
193,597 - Ga0059261_0206 0.61 -0.0
193,597 - Ga0059261_0206 0.61 +0.3
193,597 - Ga0059261_0206 0.61 -0.9
193,751 + Ga0059261_0206 0.76 +0.2
193,752 - Ga0059261_0206 0.76 +0.5
193,752 - Ga0059261_0206 0.76 -0.1
193,800 - Ga0059261_0206 0.81 +0.2
193,836 + Ga0059261_0206 0.84 -0.5
193,836 + Ga0059261_0206 0.84 +2.5
193,837 - Ga0059261_0206 0.84 +0.6
193,837 - Ga0059261_0206 0.84 +0.2
193,837 - Ga0059261_0206 0.84 +0.2
193,919 + -0.3
193,956 + +0.2
194,132 + Ga0059261_0207 0.27 +0.5
194,132 + Ga0059261_0207 0.27 +0.2
194,132 + Ga0059261_0207 0.27 -0.4
194,133 - Ga0059261_0207 0.27 -0.9
194,133 - Ga0059261_0207 0.27 -0.6
194,230 + Ga0059261_0207 0.45 -0.2
194,266 + Ga0059261_0207 0.52 -0.0
194,266 + Ga0059261_0207 0.52 -0.6
194,266 + Ga0059261_0207 0.52 -0.2
194,267 - Ga0059261_0207 0.53 +1.7
194,267 - Ga0059261_0207 0.53 -0.9
194,390 + Ga0059261_0207 0.76 -0.3
194,390 + Ga0059261_0207 0.76 -0.0
194,391 - Ga0059261_0207 0.76 -0.8
194,391 - Ga0059261_0207 0.76 +0.7
194,515 + +0.4
194,515 + -1.0
194,515 + -0.4
194,515 + +0.0
194,516 - -0.2
194,797 + Ga0059261_0208 0.81 +1.0
194,797 + Ga0059261_0208 0.81 +0.6
194,797 + Ga0059261_0208 0.81 +0.3
194,798 - Ga0059261_0208 0.81 +0.6
194,798 - Ga0059261_0208 0.81 -0.0
194,852 + +0.0
194,853 - -0.0
194,853 - +1.3
194,853 - -0.0
194,877 - +0.0
194,907 + +0.2
194,907 + +0.5
194,908 - -1.5
194,908 - +0.7
195,190 + Ga0059261_0209 0.12 -1.0
195,190 + Ga0059261_0209 0.12 +0.1
195,190 + Ga0059261_0209 0.12 +0.2
195,190 + Ga0059261_0209 0.12 +1.2
195,190 + Ga0059261_0209 0.12 +0.3
195,190 + Ga0059261_0209 0.12 +0.3
195,190 + Ga0059261_0209 0.12 +0.7
195,190 + Ga0059261_0209 0.12 -0.3
195,190 + Ga0059261_0209 0.12 -0.0
195,191 - Ga0059261_0209 0.12 -0.6
195,192 + Ga0059261_0209 0.12 +0.7
195,192 + Ga0059261_0209 0.12 +0.6
195,192 + Ga0059261_0209 0.12 -0.2
195,192 + Ga0059261_0209 0.12 -0.6
195,192 + Ga0059261_0209 0.12 +0.1
195,193 - Ga0059261_0209 0.12 +1.1
195,193 - Ga0059261_0209 0.12 -0.3
195,193 - Ga0059261_0209 0.12 -0.2
195,193 - Ga0059261_0209 0.12 +0.3
195,193 - Ga0059261_0209 0.12 +1.0
195,345 + Ga0059261_0209 0.18 -0.1
195,345 + Ga0059261_0209 0.18 -0.3
195,345 + Ga0059261_0209 0.18 -0.0
195,345 + Ga0059261_0209 0.18 -0.2
195,345 + Ga0059261_0209 0.18 -0.6
195,345 + Ga0059261_0209 0.18 +0.6
195,346 - Ga0059261_0209 0.18 -0.3
195,346 - Ga0059261_0209 0.18 +0.3
195,346 - +1.5
195,346 - Ga0059261_0209 0.18 +0.2
195,346 - Ga0059261_0209 0.18 -0.2
195,346 - Ga0059261_0209 0.18 -0.3
195,346 - Ga0059261_0209 0.18 +0.4
195,420 + Ga0059261_0209 0.22 +0.5
195,420 + Ga0059261_0209 0.22 +0.3
195,420 + Ga0059261_0209 0.22 -0.5
195,421 - Ga0059261_0209 0.22 -0.0
195,421 - Ga0059261_0209 0.22 -1.0
195,421 - Ga0059261_0209 0.22 -0.2
195,421 - Ga0059261_0209 0.22 -0.0
195,487 + Ga0059261_0209 0.24 +0.1
195,487 + Ga0059261_0209 0.24 +0.7
195,487 + Ga0059261_0209 0.24 -1.0
195,487 + Ga0059261_0209 0.24 +0.9
195,488 - Ga0059261_0209 0.24 +0.5
195,488 - Ga0059261_0209 0.24 +0.3
195,488 - Ga0059261_0209 0.24 -0.2
195,488 - Ga0059261_0209 0.24 +0.8
195,488 - Ga0059261_0209 0.24 -1.5
195,545 - Ga0059261_0209 0.27 +0.3
195,545 - +2.0
195,546 + Ga0059261_0209 0.27 +0.2
195,546 + +2.0
195,546 + Ga0059261_0209 0.27 -0.0
195,546 + Ga0059261_0209 0.27 -0.0
195,547 - Ga0059261_0209 0.27 +0.8
195,547 - Ga0059261_0209 0.27 +0.3
195,547 - Ga0059261_0209 0.27 -0.0
195,547 - Ga0059261_0209 0.27 -0.5
195,547 - Ga0059261_0209 0.27 +0.5

Or see this region's nucleotide sequence