Strain Fitness in Rahnella sp. WP5 around EX31_RS26010

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS13825 and EX31_RS26010 are separated by 165 nucleotidesEX31_RS26010 and EX31_RS13830 are separated by 303 nucleotides EX31_RS13825: EX31_RS13825 - C40 family peptidase, at 23,333 to 24,232 _RS13825 EX31_RS26010: EX31_RS26010 - YnhF family membrane protein, at 24,398 to 24,517 _RS26010 EX31_RS13830: EX31_RS13830 - HTH-type transcriptional repressor PurR, at 24,821 to 25,846 _RS13830 Position (kb) 24 25Strain fitness (log2 ratio) -2 -1 0 1 2at 23.431 kb on + strand, within EX31_RS13825at 23.443 kb on + strand, within EX31_RS13825at 23.443 kb on + strand, within EX31_RS13825at 23.509 kb on + strand, within EX31_RS13825at 23.509 kb on + strand, within EX31_RS13825at 23.566 kb on + strand, within EX31_RS13825at 23.734 kb on + strand, within EX31_RS13825at 23.735 kb on - strand, within EX31_RS13825at 23.747 kb on + strand, within EX31_RS13825at 23.748 kb on - strand, within EX31_RS13825at 23.767 kb on + strand, within EX31_RS13825at 23.767 kb on + strand, within EX31_RS13825at 23.802 kb on + strand, within EX31_RS13825at 23.802 kb on + strand, within EX31_RS13825at 23.802 kb on + strand, within EX31_RS13825at 23.802 kb on + strand, within EX31_RS13825at 23.815 kb on + strand, within EX31_RS13825at 23.815 kb on + strand, within EX31_RS13825at 23.931 kb on + strand, within EX31_RS13825at 23.939 kb on + strand, within EX31_RS13825at 23.939 kb on + strand, within EX31_RS13825at 23.962 kb on + strand, within EX31_RS13825at 23.965 kb on + strand, within EX31_RS13825at 23.965 kb on + strand, within EX31_RS13825at 23.965 kb on + strand, within EX31_RS13825at 23.965 kb on + strand, within EX31_RS13825at 23.965 kb on + strand, within EX31_RS13825at 23.966 kb on - strand, within EX31_RS13825at 23.993 kb on + strand, within EX31_RS13825at 23.993 kb on + strand, within EX31_RS13825at 23.993 kb on + strand, within EX31_RS13825at 23.993 kb on + strand, within EX31_RS13825at 24.098 kb on + strand, within EX31_RS13825at 24.098 kb on + strand, within EX31_RS13825at 24.099 kb on - strand, within EX31_RS13825at 24.173 kb on + strandat 24.174 kb on - strandat 24.188 kb on + strandat 24.188 kb on + strandat 24.188 kb on + strandat 24.188 kb on + strandat 24.188 kb on + strandat 24.188 kb on + strandat 24.188 kb on + strandat 24.189 kb on - strandat 24.189 kb on - strandat 24.234 kb on + strandat 24.245 kb on + strandat 24.284 kb on + strandat 24.285 kb on - strandat 24.285 kb on - strandat 24.392 kb on - strandat 24.437 kb on - strand, within EX31_RS26010at 24.437 kb on - strand, within EX31_RS26010at 24.450 kb on - strand, within EX31_RS26010at 24.468 kb on - strand, within EX31_RS26010at 24.533 kb on - strandat 24.533 kb on - strandat 24.533 kb on - strandat 24.533 kb on - strandat 24.563 kb on - strandat 24.595 kb on - strandat 24.629 kb on - strandat 24.629 kb on - strandat 24.629 kb on - strandat 24.630 kb on + strandat 24.631 kb on - strandat 24.684 kb on + strandat 24.685 kb on - strandat 24.735 kb on - strandat 24.770 kb on + strandat 24.775 kb on + strandat 24.775 kb on + strandat 24.776 kb on - strandat 24.776 kb on - strandat 24.781 kb on + strandat 24.781 kb on + strandat 24.781 kb on + strandat 24.781 kb on + strandat 24.818 kb on + strandat 24.819 kb on - strandat 24.832 kb on + strandat 24.948 kb on + strand, within EX31_RS13830at 24.954 kb on - strand, within EX31_RS13830at 24.969 kb on + strand, within EX31_RS13830at 25.037 kb on + strand, within EX31_RS13830at 25.089 kb on - strand, within EX31_RS13830at 25.090 kb on + strand, within EX31_RS13830at 25.118 kb on - strand, within EX31_RS13830at 25.118 kb on - strand, within EX31_RS13830at 25.139 kb on + strand, within EX31_RS13830at 25.139 kb on + strand, within EX31_RS13830at 25.139 kb on + strand, within EX31_RS13830at 25.216 kb on + strand, within EX31_RS13830at 25.216 kb on + strand, within EX31_RS13830at 25.216 kb on + strand, within EX31_RS13830at 25.216 kb on + strand, within EX31_RS13830at 25.273 kb on + strand, within EX31_RS13830at 25.294 kb on + strand, within EX31_RS13830at 25.319 kb on + strand, within EX31_RS13830at 25.319 kb on + strand, within EX31_RS13830at 25.319 kb on + strand, within EX31_RS13830at 25.319 kb on + strand, within EX31_RS13830at 25.319 kb on + strand, within EX31_RS13830at 25.319 kb on + strand, within EX31_RS13830at 25.320 kb on - strand, within EX31_RS13830at 25.320 kb on - strand, within EX31_RS13830at 25.390 kb on + strand, within EX31_RS13830at 25.390 kb on + strand, within EX31_RS13830at 25.390 kb on + strand, within EX31_RS13830at 25.390 kb on + strand, within EX31_RS13830at 25.390 kb on + strand, within EX31_RS13830at 25.390 kb on + strand, within EX31_RS13830at 25.390 kb on + strand, within EX31_RS13830at 25.390 kb on + strand, within EX31_RS13830at 25.391 kb on - strand, within EX31_RS13830at 25.444 kb on + strand, within EX31_RS13830at 25.467 kb on + strand, within EX31_RS13830

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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23,431 + EX31_RS13825 0.11 +1.2
23,443 + EX31_RS13825 0.12 -0.2
23,443 + EX31_RS13825 0.12 -0.1
23,509 + EX31_RS13825 0.20 +0.9
23,509 + EX31_RS13825 0.20 +1.5
23,566 + EX31_RS13825 0.26 -0.2
23,734 + EX31_RS13825 0.45 -0.6
23,735 - EX31_RS13825 0.45 +0.5
23,747 + EX31_RS13825 0.46 +1.9
23,748 - EX31_RS13825 0.46 -0.2
23,767 + EX31_RS13825 0.48 -1.1
23,767 + EX31_RS13825 0.48 -0.3
23,802 + EX31_RS13825 0.52 +0.1
23,802 + EX31_RS13825 0.52 +1.0
23,802 + EX31_RS13825 0.52 +0.3
23,802 + EX31_RS13825 0.52 +0.8
23,815 + EX31_RS13825 0.54 +0.6
23,815 + EX31_RS13825 0.54 +0.0
23,931 + EX31_RS13825 0.66 -0.4
23,939 + EX31_RS13825 0.67 +0.6
23,939 + EX31_RS13825 0.67 +0.3
23,962 + EX31_RS13825 0.70 +0.1
23,965 + EX31_RS13825 0.70 +2.1
23,965 + EX31_RS13825 0.70 -0.2
23,965 + EX31_RS13825 0.70 +0.4
23,965 + EX31_RS13825 0.70 -0.1
23,965 + EX31_RS13825 0.70 -0.8
23,966 - EX31_RS13825 0.70 +1.8
23,993 + EX31_RS13825 0.73 +1.0
23,993 + EX31_RS13825 0.73 +1.3
23,993 + EX31_RS13825 0.73 +1.1
23,993 + EX31_RS13825 0.73 +0.1
24,098 + EX31_RS13825 0.85 +0.1
24,098 + EX31_RS13825 0.85 -0.6
24,099 - EX31_RS13825 0.85 +2.2
24,173 + +0.7
24,174 - -0.7
24,188 + +0.4
24,188 + +0.8
24,188 + -0.5
24,188 + +0.4
24,188 + -0.9
24,188 + -0.5
24,188 + +0.5
24,189 - +0.5
24,189 - +1.1
24,234 + +0.8
24,245 + -1.3
24,284 + +0.5
24,285 - -1.5
24,285 - -0.5
24,392 - +0.1
24,437 - EX31_RS26010 0.33 -0.3
24,437 - EX31_RS26010 0.33 -1.3
24,450 - EX31_RS26010 0.43 -0.5
24,468 - EX31_RS26010 0.58 -0.5
24,533 - +1.6
24,533 - +0.7
24,533 - +0.8
24,533 - -0.0
24,563 - +0.9
24,595 - -0.2
24,629 - -0.3
24,629 - +2.7
24,629 - +1.6
24,630 + -0.5
24,631 - +1.0
24,684 + +1.4
24,685 - +1.5
24,735 - +0.5
24,770 + -0.3
24,775 + +1.7
24,775 + +1.9
24,776 - +0.2
24,776 - -1.1
24,781 + +0.1
24,781 + +2.1
24,781 + +0.0
24,781 + +0.1
24,818 + +0.8
24,819 - +0.5
24,832 + +0.7
24,948 + EX31_RS13830 0.12 +0.5
24,954 - EX31_RS13830 0.13 -0.5
24,969 + EX31_RS13830 0.14 +2.1
25,037 + EX31_RS13830 0.21 -0.5
25,089 - EX31_RS13830 0.26 -1.5
25,090 + EX31_RS13830 0.26 +1.1
25,118 - EX31_RS13830 0.29 +0.0
25,118 - EX31_RS13830 0.29 +0.2
25,139 + EX31_RS13830 0.31 -2.7
25,139 + EX31_RS13830 0.31 -0.2
25,139 + EX31_RS13830 0.31 +2.5
25,216 + EX31_RS13830 0.38 +0.9
25,216 + EX31_RS13830 0.38 -0.3
25,216 + EX31_RS13830 0.38 +1.2
25,216 + EX31_RS13830 0.38 +2.2
25,273 + EX31_RS13830 0.44 +1.2
25,294 + EX31_RS13830 0.46 +0.8
25,319 + EX31_RS13830 0.49 +0.9
25,319 + EX31_RS13830 0.49 +0.7
25,319 + EX31_RS13830 0.49 -1.1
25,319 + EX31_RS13830 0.49 +0.5
25,319 + EX31_RS13830 0.49 +0.8
25,319 + EX31_RS13830 0.49 +0.8
25,320 - EX31_RS13830 0.49 -0.5
25,320 - EX31_RS13830 0.49 -0.8
25,390 + EX31_RS13830 0.55 -0.6
25,390 + EX31_RS13830 0.55 +1.5
25,390 + EX31_RS13830 0.55 +0.1
25,390 + EX31_RS13830 0.55 +0.8
25,390 + EX31_RS13830 0.55 -2.5
25,390 + EX31_RS13830 0.55 +0.4
25,390 + EX31_RS13830 0.55 -0.2
25,390 + EX31_RS13830 0.55 +0.7
25,391 - EX31_RS13830 0.56 +0.7
25,444 + EX31_RS13830 0.61 -0.9
25,467 + EX31_RS13830 0.63 +0.5

Or see this region's nucleotide sequence