Strain Fitness in Rahnella sp. WP5 around EX31_RS22120

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS22110 and EX31_RS22115 are separated by 81 nucleotidesEX31_RS22115 and EX31_RS22120 are separated by 160 nucleotidesEX31_RS22120 and EX31_RS22125 are separated by 9 nucleotides EX31_RS22110: EX31_RS22110 - protein translocase subunit SecF, at 171,340 to 172,314 _RS22110 EX31_RS22115: EX31_RS22115 - DUF3251 domain-containing protein, at 172,396 to 172,959 _RS22115 EX31_RS22120: EX31_RS22120 - transcriptional regulator NrdR, at 173,120 to 173,569 _RS22120 EX31_RS22125: EX31_RS22125 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 173,579 to 174,715 _RS22125 Position (kb) 173 174Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 172.312 kb on + strandat 172.312 kb on + strandat 172.312 kb on + strandat 172.312 kb on + strandat 172.313 kb on - strandat 172.313 kb on - strandat 172.397 kb on + strandat 172.398 kb on - strandat 172.437 kb on + strandat 172.437 kb on + strandat 172.437 kb on + strandat 172.437 kb on + strandat 172.437 kb on + strandat 172.438 kb on - strandat 172.438 kb on - strandat 172.438 kb on - strandat 172.438 kb on - strandat 172.438 kb on - strandat 172.438 kb on - strandat 172.441 kb on - strandat 172.441 kb on - strandat 172.441 kb on - strandat 172.536 kb on + strand, within EX31_RS22115at 172.615 kb on - strand, within EX31_RS22115at 172.709 kb on - strand, within EX31_RS22115at 172.709 kb on - strand, within EX31_RS22115at 172.709 kb on - strand, within EX31_RS22115at 172.709 kb on - strand, within EX31_RS22115at 172.709 kb on - strand, within EX31_RS22115at 172.719 kb on + strand, within EX31_RS22115at 172.720 kb on - strand, within EX31_RS22115at 172.720 kb on - strand, within EX31_RS22115at 172.720 kb on - strand, within EX31_RS22115at 172.720 kb on - strand, within EX31_RS22115at 172.723 kb on - strand, within EX31_RS22115at 172.723 kb on - strand, within EX31_RS22115at 172.723 kb on - strand, within EX31_RS22115at 172.723 kb on - strand, within EX31_RS22115at 172.723 kb on - strand, within EX31_RS22115at 172.723 kb on - strand, within EX31_RS22115at 172.723 kb on - strand, within EX31_RS22115at 172.763 kb on + strand, within EX31_RS22115at 172.764 kb on - strand, within EX31_RS22115at 172.764 kb on - strand, within EX31_RS22115at 172.764 kb on - strand, within EX31_RS22115at 172.764 kb on - strand, within EX31_RS22115at 172.764 kb on - strand, within EX31_RS22115at 172.764 kb on - strand, within EX31_RS22115at 172.773 kb on + strand, within EX31_RS22115at 172.773 kb on + strand, within EX31_RS22115at 172.773 kb on + strand, within EX31_RS22115at 172.774 kb on - strand, within EX31_RS22115at 173.017 kb on + strandat 173.018 kb on - strandat 173.018 kb on - strandat 173.018 kb on - strandat 173.018 kb on - strandat 173.018 kb on - strandat 173.018 kb on - strandat 173.018 kb on - strandat 173.018 kb on - strandat 173.018 kb on - strandat 173.021 kb on + strandat 173.021 kb on + strandat 173.021 kb on + strandat 173.021 kb on + strandat 173.021 kb on + strandat 173.021 kb on + strandat 173.022 kb on - strandat 173.022 kb on - strandat 173.022 kb on - strandat 173.022 kb on - strandat 173.022 kb on - strandat 173.047 kb on + strandat 173.047 kb on + strandat 173.047 kb on + strandat 173.047 kb on + strandat 173.048 kb on - strandat 173.086 kb on + strandat 173.086 kb on + strandat 173.086 kb on + strandat 173.086 kb on + strandat 173.086 kb on + strandat 173.086 kb on + strandat 173.086 kb on + strandat 173.086 kb on + strandat 173.086 kb on + strandat 173.119 kb on + strandat 173.119 kb on + strandat 173.119 kb on + strandat 173.119 kb on + strandat 173.119 kb on + strandat 173.119 kb on + strandat 173.149 kb on + strandat 173.152 kb on + strandat 173.152 kb on + strandat 173.152 kb on + strandat 173.152 kb on + strandat 173.152 kb on + strandat 173.152 kb on + strandat 173.152 kb on + strandat 173.175 kb on + strand, within EX31_RS22120at 173.275 kb on + strand, within EX31_RS22120at 173.392 kb on + strand, within EX31_RS22120at 173.392 kb on + strand, within EX31_RS22120at 173.392 kb on + strand, within EX31_RS22120at 173.392 kb on + strand, within EX31_RS22120at 173.392 kb on + strand, within EX31_RS22120at 173.392 kb on + strand, within EX31_RS22120at 173.392 kb on + strand, within EX31_RS22120at 173.392 kb on + strand, within EX31_RS22120at 173.392 kb on + strand, within EX31_RS22120at 173.392 kb on + strand, within EX31_RS22120at 173.489 kb on + strand, within EX31_RS22120at 173.489 kb on + strand, within EX31_RS22120at 173.489 kb on + strand, within EX31_RS22120at 173.489 kb on + strand, within EX31_RS22120at 173.489 kb on + strand, within EX31_RS22120at 173.510 kb on + strand, within EX31_RS22120at 173.527 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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172,312 + +1.3
172,312 + +1.4
172,312 + -0.1
172,312 + -0.1
172,313 - +0.0
172,313 - +1.7
172,397 + +1.7
172,398 - +0.7
172,437 + -0.1
172,437 + -0.9
172,437 + -1.1
172,437 + -0.1
172,437 + +0.7
172,438 - +1.3
172,438 - +3.0
172,438 - -0.6
172,438 - -0.6
172,438 - +1.4
172,438 - -0.6
172,441 - -0.9
172,441 - +0.9
172,441 - +0.1
172,536 + EX31_RS22115 0.25 +1.7
172,615 - EX31_RS22115 0.39 +0.6
172,709 - EX31_RS22115 0.55 -1.5
172,709 - EX31_RS22115 0.55 +0.7
172,709 - EX31_RS22115 0.55 -0.5
172,709 - EX31_RS22115 0.55 +0.7
172,709 - EX31_RS22115 0.55 +0.7
172,719 + EX31_RS22115 0.57 -0.1
172,720 - EX31_RS22115 0.57 +1.9
172,720 - EX31_RS22115 0.57 +1.7
172,720 - EX31_RS22115 0.57 -0.8
172,720 - EX31_RS22115 0.57 +0.9
172,723 - EX31_RS22115 0.58 +0.9
172,723 - EX31_RS22115 0.58 -0.2
172,723 - EX31_RS22115 0.58 -1.1
172,723 - EX31_RS22115 0.58 +1.4
172,723 - EX31_RS22115 0.58 +0.5
172,723 - EX31_RS22115 0.58 -0.3
172,723 - EX31_RS22115 0.58 +0.4
172,763 + EX31_RS22115 0.65 +1.3
172,764 - EX31_RS22115 0.65 -0.6
172,764 - EX31_RS22115 0.65 +0.0
172,764 - EX31_RS22115 0.65 -0.4
172,764 - EX31_RS22115 0.65 +0.5
172,764 - EX31_RS22115 0.65 -0.6
172,764 - EX31_RS22115 0.65 +0.9
172,773 + EX31_RS22115 0.67 +0.6
172,773 + EX31_RS22115 0.67 +1.4
172,773 + EX31_RS22115 0.67 -0.5
172,774 - EX31_RS22115 0.67 -0.1
173,017 + +1.2
173,018 - +1.0
173,018 - -0.8
173,018 - +0.3
173,018 - -0.3
173,018 - +1.2
173,018 - +0.6
173,018 - -0.0
173,018 - +0.7
173,018 - +1.3
173,021 + -1.3
173,021 + -0.8
173,021 + +1.7
173,021 + -1.6
173,021 + -0.6
173,021 + +2.0
173,022 - -1.1
173,022 - -0.4
173,022 - -1.0
173,022 - +0.4
173,022 - -0.3
173,047 + -1.3
173,047 + -0.1
173,047 + +1.7
173,047 + +1.9
173,048 - -0.3
173,086 + +0.3
173,086 + +0.1
173,086 + -1.6
173,086 + +0.7
173,086 + +1.4
173,086 + -2.9
173,086 + +0.6
173,086 + +0.1
173,086 + -0.4
173,119 + +1.0
173,119 + -1.6
173,119 + -1.9
173,119 + +0.4
173,119 + +0.1
173,119 + -0.1
173,149 + -1.2
173,152 + +1.4
173,152 + +0.4
173,152 + -3.1
173,152 + -0.3
173,152 + -0.1
173,152 + -0.1
173,152 + +0.9
173,175 + EX31_RS22120 0.12 -0.1
173,275 + EX31_RS22120 0.34 -0.6
173,392 + EX31_RS22120 0.60 +0.2
173,392 + EX31_RS22120 0.60 -1.9
173,392 + EX31_RS22120 0.60 -0.7
173,392 + EX31_RS22120 0.60 -2.8
173,392 + EX31_RS22120 0.60 -1.2
173,392 + EX31_RS22120 0.60 -0.1
173,392 + EX31_RS22120 0.60 -0.0
173,392 + EX31_RS22120 0.60 -0.6
173,392 + EX31_RS22120 0.60 -0.3
173,392 + EX31_RS22120 0.60 -1.9
173,489 + EX31_RS22120 0.82 +0.2
173,489 + EX31_RS22120 0.82 -2.9
173,489 + EX31_RS22120 0.82 -1.2
173,489 + EX31_RS22120 0.82 -0.2
173,489 + EX31_RS22120 0.82 -0.6
173,510 + EX31_RS22120 0.87 -0.7
173,527 + -0.9

Or see this region's nucleotide sequence