Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20580 and EX31_RS20585 are separated by 163 nucleotides EX31_RS20585 and EX31_RS20590 are separated by 332 nucleotides
EX31_RS20580: EX31_RS20580 - 3-phenylpropionate MFS transporter, at 753,803 to 754,963
_RS20580
EX31_RS20585: EX31_RS20585 - serine hydroxymethyltransferase, at 755,127 to 756,380
_RS20585
EX31_RS20590: EX31_RS20590 - NO-inducible flavohemoprotein, at 756,713 to 757,903
_RS20590
Position (kb) 755
756
757 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 754.189 kb on + strand, within EX31_RS20580 at 754.189 kb on + strand, within EX31_RS20580 at 754.189 kb on + strand, within EX31_RS20580 at 754.189 kb on + strand, within EX31_RS20580 at 754.190 kb on - strand, within EX31_RS20580 at 754.190 kb on - strand, within EX31_RS20580 at 754.190 kb on - strand, within EX31_RS20580 at 754.192 kb on + strand, within EX31_RS20580 at 754.192 kb on + strand, within EX31_RS20580 at 754.198 kb on + strand, within EX31_RS20580 at 754.240 kb on - strand, within EX31_RS20580 at 754.279 kb on - strand, within EX31_RS20580 at 754.299 kb on + strand, within EX31_RS20580 at 754.334 kb on + strand, within EX31_RS20580 at 754.334 kb on + strand, within EX31_RS20580 at 754.334 kb on + strand, within EX31_RS20580 at 754.335 kb on - strand, within EX31_RS20580 at 754.335 kb on - strand, within EX31_RS20580 at 754.495 kb on + strand, within EX31_RS20580 at 754.496 kb on - strand, within EX31_RS20580 at 754.496 kb on - strand, within EX31_RS20580 at 754.503 kb on + strand, within EX31_RS20580 at 754.503 kb on + strand, within EX31_RS20580 at 754.726 kb on + strand, within EX31_RS20580 at 754.726 kb on + strand, within EX31_RS20580 at 754.726 kb on + strand, within EX31_RS20580 at 754.727 kb on - strand, within EX31_RS20580 at 754.741 kb on + strand, within EX31_RS20580 at 754.761 kb on + strand, within EX31_RS20580 at 754.762 kb on - strand, within EX31_RS20580 at 754.762 kb on - strand, within EX31_RS20580 at 754.870 kb on + strand at 754.871 kb on - strand at 754.871 kb on - strand at 754.901 kb on - strand at 754.906 kb on - strand at 754.917 kb on + strand at 754.918 kb on - strand at 754.927 kb on - strand at 754.963 kb on + strand at 754.986 kb on + strand at 754.986 kb on + strand at 754.986 kb on + strand at 754.987 kb on - strand at 754.987 kb on - strand at 755.032 kb on + strand at 755.068 kb on - strand at 755.068 kb on - strand at 755.068 kb on - strand at 755.103 kb on - strand at 755.103 kb on - strand at 755.111 kb on - strand at 755.125 kb on + strand at 756.442 kb on + strand at 756.442 kb on + strand at 756.442 kb on + strand at 756.442 kb on + strand at 756.442 kb on + strand at 756.443 kb on - strand at 756.443 kb on - strand at 756.443 kb on - strand at 756.443 kb on - strand at 756.443 kb on - strand at 756.443 kb on - strand at 756.443 kb on - strand at 756.556 kb on + strand at 756.557 kb on - strand at 756.572 kb on + strand at 756.572 kb on + strand at 756.573 kb on - strand at 756.644 kb on + strand at 756.645 kb on - strand at 756.645 kb on - strand at 756.645 kb on - strand at 756.742 kb on + strand at 756.742 kb on + strand at 756.742 kb on + strand at 756.743 kb on - strand at 756.743 kb on - strand at 756.743 kb on - strand at 756.751 kb on + strand at 756.752 kb on - strand at 756.797 kb on + strand at 756.797 kb on + strand at 756.798 kb on - strand at 756.798 kb on - strand at 756.805 kb on + strand at 756.805 kb on + strand at 756.805 kb on + strand at 756.806 kb on - strand at 756.806 kb on - strand at 756.806 kb on - strand at 756.806 kb on - strand at 756.806 kb on - strand at 756.817 kb on + strand at 756.844 kb on + strand, within EX31_RS20590 at 756.844 kb on + strand, within EX31_RS20590 at 756.845 kb on - strand, within EX31_RS20590 at 756.845 kb on - strand, within EX31_RS20590 at 756.845 kb on - strand, within EX31_RS20590 at 756.903 kb on - strand, within EX31_RS20590 at 756.903 kb on - strand, within EX31_RS20590 at 756.995 kb on + strand, within EX31_RS20590 at 756.995 kb on + strand, within EX31_RS20590 at 756.995 kb on + strand, within EX31_RS20590 at 756.995 kb on + strand, within EX31_RS20590 at 756.996 kb on - strand, within EX31_RS20590 at 756.996 kb on - strand, within EX31_RS20590 at 756.996 kb on - strand, within EX31_RS20590 at 756.996 kb on - strand, within EX31_RS20590 at 756.996 kb on - strand, within EX31_RS20590 at 756.996 kb on - strand, within EX31_RS20590 at 756.996 kb on - strand, within EX31_RS20590 at 756.996 kb on - strand, within EX31_RS20590 at 757.000 kb on + strand, within EX31_RS20590 at 757.000 kb on + strand, within EX31_RS20590 at 757.000 kb on + strand, within EX31_RS20590 at 757.000 kb on + strand, within EX31_RS20590 at 757.000 kb on + strand, within EX31_RS20590 at 757.000 kb on + strand, within EX31_RS20590 at 757.000 kb on + strand, within EX31_RS20590 at 757.001 kb on - strand, within EX31_RS20590 at 757.001 kb on - strand, within EX31_RS20590 at 757.082 kb on + strand, within EX31_RS20590 at 757.082 kb on + strand, within EX31_RS20590 at 757.082 kb on + strand, within EX31_RS20590 at 757.106 kb on - strand, within EX31_RS20590 at 757.106 kb on - strand, within EX31_RS20590 at 757.109 kb on - strand, within EX31_RS20590 at 757.213 kb on + strand, within EX31_RS20590 at 757.213 kb on + strand, within EX31_RS20590 at 757.213 kb on + strand, within EX31_RS20590 at 757.213 kb on + strand, within EX31_RS20590 at 757.214 kb on - strand, within EX31_RS20590 at 757.214 kb on - strand, within EX31_RS20590 at 757.275 kb on - strand, within EX31_RS20590 at 757.275 kb on - strand, within EX31_RS20590 at 757.284 kb on + strand, within EX31_RS20590 at 757.284 kb on + strand, within EX31_RS20590 at 757.285 kb on - strand, within EX31_RS20590 at 757.285 kb on - strand, within EX31_RS20590 at 757.286 kb on + strand, within EX31_RS20590 at 757.286 kb on + strand, within EX31_RS20590 at 757.286 kb on + strand, within EX31_RS20590 at 757.286 kb on + strand, within EX31_RS20590 at 757.286 kb on + strand, within EX31_RS20590 at 757.286 kb on + strand, within EX31_RS20590 at 757.286 kb on + strand, within EX31_RS20590 at 757.286 kb on + strand, within EX31_RS20590 at 757.286 kb on + strand, within EX31_RS20590 at 757.286 kb on + strand, within EX31_RS20590 at 757.286 kb on + strand, within EX31_RS20590 at 757.286 kb on + strand, within EX31_RS20590 at 757.287 kb on - strand, within EX31_RS20590 at 757.287 kb on - strand, within EX31_RS20590 at 757.287 kb on - strand, within EX31_RS20590 at 757.287 kb on - strand, within EX31_RS20590 at 757.287 kb on - strand, within EX31_RS20590 at 757.287 kb on - strand, within EX31_RS20590 at 757.287 kb on - strand, within EX31_RS20590 at 757.287 kb on - strand, within EX31_RS20590 at 757.287 kb on - strand, within EX31_RS20590 at 757.287 kb on - strand, within EX31_RS20590 at 757.287 kb on - strand, within EX31_RS20590 at 757.287 kb on - strand, within EX31_RS20590 at 757.287 kb on - strand, within EX31_RS20590 at 757.287 kb on - strand, within EX31_RS20590 at 757.287 kb on - strand, within EX31_RS20590 at 757.287 kb on - strand, within EX31_RS20590 at 757.288 kb on + strand, within EX31_RS20590 at 757.288 kb on + strand, within EX31_RS20590 at 757.288 kb on + strand, within EX31_RS20590 at 757.288 kb on + strand, within EX31_RS20590 at 757.288 kb on + strand, within EX31_RS20590 at 757.288 kb on + strand, within EX31_RS20590 at 757.289 kb on - strand, within EX31_RS20590 at 757.289 kb on - strand, within EX31_RS20590 at 757.289 kb on - strand, within EX31_RS20590 at 757.329 kb on - strand, within EX31_RS20590 at 757.375 kb on - strand, within EX31_RS20590
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 754,189 + EX31_RS20580 0.33 -0.2 754,189 + EX31_RS20580 0.33 +1.4 754,189 + EX31_RS20580 0.33 -0.2 754,189 + EX31_RS20580 0.33 +0.8 754,190 - EX31_RS20580 0.33 -0.6 754,190 - EX31_RS20580 0.33 +1.8 754,190 - EX31_RS20580 0.33 -0.0 754,192 + EX31_RS20580 0.34 -0.6 754,192 + EX31_RS20580 0.34 +0.5 754,198 + EX31_RS20580 0.34 -0.8 754,240 - EX31_RS20580 0.38 -0.8 754,279 - EX31_RS20580 0.41 +0.5 754,299 + EX31_RS20580 0.43 -0.9 754,334 + EX31_RS20580 0.46 +0.6 754,334 + EX31_RS20580 0.46 +1.0 754,334 + EX31_RS20580 0.46 +2.9 754,335 - EX31_RS20580 0.46 +0.6 754,335 - EX31_RS20580 0.46 +1.1 754,495 + EX31_RS20580 0.60 +0.1 754,496 - EX31_RS20580 0.60 +0.3 754,496 - EX31_RS20580 0.60 -0.1 754,503 + EX31_RS20580 0.60 -0.2 754,503 + EX31_RS20580 0.60 -0.6 754,726 + EX31_RS20580 0.80 -0.3 754,726 + EX31_RS20580 0.80 -0.4 754,726 + EX31_RS20580 0.80 +0.6 754,727 - EX31_RS20580 0.80 +0.9 754,741 + EX31_RS20580 0.81 -0.6 754,761 + EX31_RS20580 0.83 -1.6 754,762 - EX31_RS20580 0.83 +0.2 754,762 - EX31_RS20580 0.83 -1.0 754,870 + +1.2 754,871 - +1.0 754,871 - -0.9 754,901 - -0.2 754,906 - +1.5 754,917 + -2.4 754,918 - +0.1 754,927 - +1.3 754,963 + +0.1 754,986 + +0.3 754,986 + +1.6 754,986 + -0.8 754,987 - +0.6 754,987 - +0.7 755,032 + +1.2 755,068 - +0.7 755,068 - +0.7 755,068 - -0.1 755,103 - +0.1 755,103 - -0.2 755,111 - +0.0 755,125 + +1.1 756,442 + -2.6 756,442 + -2.3 756,442 + -3.9 756,442 + -3.5 756,442 + -2.3 756,443 - +0.3 756,443 - -1.3 756,443 - -0.0 756,443 - -0.5 756,443 - -0.3 756,443 - -0.4 756,443 - +0.8 756,556 + +0.4 756,557 - +0.3 756,572 + +0.1 756,572 + +0.3 756,573 - +2.2 756,644 + -0.4 756,645 - -0.2 756,645 - -0.2 756,645 - -2.0 756,742 + +1.1 756,742 + -1.2 756,742 + +0.7 756,743 - +0.2 756,743 - +0.1 756,743 - +1.5 756,751 + -0.2 756,752 - -0.5 756,797 + +1.6 756,797 + +1.4 756,798 - -1.2 756,798 - -0.1 756,805 + +0.5 756,805 + +0.4 756,805 + +0.4 756,806 - -0.8 756,806 - -1.5 756,806 - +0.2 756,806 - +0.8 756,806 - +0.1 756,817 + +1.2 756,844 + EX31_RS20590 0.11 -1.5 756,844 + EX31_RS20590 0.11 +0.1 756,845 - EX31_RS20590 0.11 +0.2 756,845 - EX31_RS20590 0.11 +0.3 756,845 - EX31_RS20590 0.11 +1.2 756,903 - EX31_RS20590 0.16 +0.6 756,903 - EX31_RS20590 0.16 +0.4 756,995 + EX31_RS20590 0.24 +0.8 756,995 + EX31_RS20590 0.24 +0.5 756,995 + EX31_RS20590 0.24 +1.3 756,995 + EX31_RS20590 0.24 +0.0 756,996 - EX31_RS20590 0.24 +0.7 756,996 - EX31_RS20590 0.24 -0.6 756,996 - EX31_RS20590 0.24 +0.3 756,996 - EX31_RS20590 0.24 +1.8 756,996 - EX31_RS20590 0.24 -1.6 756,996 - EX31_RS20590 0.24 -0.8 756,996 - EX31_RS20590 0.24 -0.8 756,996 - EX31_RS20590 0.24 +1.0 757,000 + EX31_RS20590 0.24 -0.3 757,000 + EX31_RS20590 0.24 -0.8 757,000 + EX31_RS20590 0.24 -0.8 757,000 + EX31_RS20590 0.24 +0.5 757,000 + EX31_RS20590 0.24 -0.5 757,000 + EX31_RS20590 0.24 +0.6 757,000 + EX31_RS20590 0.24 -1.8 757,001 - EX31_RS20590 0.24 +1.4 757,001 - EX31_RS20590 0.24 +1.2 757,082 + EX31_RS20590 0.31 +0.8 757,082 + EX31_RS20590 0.31 -0.3 757,082 + EX31_RS20590 0.31 +0.6 757,106 - EX31_RS20590 0.33 -0.1 757,106 - EX31_RS20590 0.33 -0.7 757,109 - EX31_RS20590 0.33 +0.3 757,213 + EX31_RS20590 0.42 -0.2 757,213 + EX31_RS20590 0.42 -1.9 757,213 + EX31_RS20590 0.42 -0.6 757,213 + EX31_RS20590 0.42 -0.6 757,214 - EX31_RS20590 0.42 +0.4 757,214 - EX31_RS20590 0.42 +0.8 757,275 - EX31_RS20590 0.47 +0.8 757,275 - EX31_RS20590 0.47 +1.3 757,284 + EX31_RS20590 0.48 -0.5 757,284 + EX31_RS20590 0.48 -0.2 757,285 - EX31_RS20590 0.48 +2.4 757,285 - EX31_RS20590 0.48 +0.5 757,286 + EX31_RS20590 0.48 -0.1 757,286 + EX31_RS20590 0.48 +0.6 757,286 + EX31_RS20590 0.48 +0.5 757,286 + EX31_RS20590 0.48 +1.2 757,286 + EX31_RS20590 0.48 +0.1 757,286 + EX31_RS20590 0.48 -0.9 757,286 + EX31_RS20590 0.48 +0.7 757,286 + EX31_RS20590 0.48 -0.6 757,286 + EX31_RS20590 0.48 +0.1 757,286 + EX31_RS20590 0.48 -0.2 757,286 + EX31_RS20590 0.48 -0.5 757,286 + EX31_RS20590 0.48 +0.6 757,287 - EX31_RS20590 0.48 +0.7 757,287 - EX31_RS20590 0.48 +0.8 757,287 - EX31_RS20590 0.48 +1.6 757,287 - EX31_RS20590 0.48 +0.8 757,287 - EX31_RS20590 0.48 +1.7 757,287 - EX31_RS20590 0.48 +0.0 757,287 - EX31_RS20590 0.48 -0.2 757,287 - EX31_RS20590 0.48 -0.8 757,287 - EX31_RS20590 0.48 -0.2 757,287 - EX31_RS20590 0.48 +0.1 757,287 - EX31_RS20590 0.48 +0.8 757,287 - EX31_RS20590 0.48 +1.4 757,287 - EX31_RS20590 0.48 -1.2 757,287 - EX31_RS20590 0.48 +0.8 757,287 - EX31_RS20590 0.48 +1.2 757,287 - EX31_RS20590 0.48 -0.2 757,288 + EX31_RS20590 0.48 -0.6 757,288 + EX31_RS20590 0.48 +0.8 757,288 + EX31_RS20590 0.48 +0.8 757,288 + EX31_RS20590 0.48 +1.2 757,288 + EX31_RS20590 0.48 -0.0 757,288 + EX31_RS20590 0.48 +0.1 757,289 - EX31_RS20590 0.48 -0.2 757,289 - EX31_RS20590 0.48 -0.7 757,289 - EX31_RS20590 0.48 +0.2 757,329 - EX31_RS20590 0.52 -1.2 757,375 - EX31_RS20590 0.56 +0.2
Or see this region's nucleotide sequence