Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20310 and EX31_RS20315 are separated by 0 nucleotides EX31_RS20315 and EX31_RS20320 are separated by 154 nucleotides EX31_RS20320 and EX31_RS20325 are separated by 186 nucleotides
EX31_RS20310: EX31_RS20310 - two-component system sensor histidine kinase BaeS, at 691,581 to 692,966
_RS20310
EX31_RS20315: EX31_RS20315 - two-component system response regulator BaeR, at 692,967 to 693,686
_RS20315
EX31_RS20320: EX31_RS20320 - YegP family protein, at 693,841 to 694,188
_RS20320
EX31_RS20325: EX31_RS20325 - tRNA 5-hydroxyuridine modification protein YegQ, at 694,375 to 695,760
_RS20325
Position (kb) 693
694
695 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 692.980 kb on + strand at 692.980 kb on + strand at 692.980 kb on + strand at 693.029 kb on + strand at 693.029 kb on + strand at 693.110 kb on + strand, within EX31_RS20315 at 693.289 kb on - strand, within EX31_RS20315 at 693.303 kb on + strand, within EX31_RS20315 at 693.303 kb on + strand, within EX31_RS20315 at 693.355 kb on + strand, within EX31_RS20315 at 693.355 kb on + strand, within EX31_RS20315 at 693.355 kb on + strand, within EX31_RS20315 at 693.355 kb on + strand, within EX31_RS20315 at 693.356 kb on - strand, within EX31_RS20315 at 693.496 kb on - strand, within EX31_RS20315 at 693.532 kb on - strand, within EX31_RS20315 at 693.626 kb on + strand at 693.637 kb on + strand at 693.637 kb on + strand at 693.640 kb on - strand at 693.640 kb on - strand at 693.640 kb on - strand at 693.759 kb on - strand at 693.792 kb on + strand at 693.793 kb on - strand at 693.793 kb on - strand at 693.793 kb on - strand at 693.793 kb on - strand at 693.796 kb on + strand at 693.796 kb on + strand at 693.796 kb on + strand at 693.797 kb on - strand at 693.797 kb on - strand at 693.802 kb on + strand at 693.802 kb on + strand at 693.802 kb on + strand at 693.802 kb on + strand at 693.802 kb on + strand at 693.802 kb on + strand at 693.803 kb on - strand at 693.803 kb on - strand at 693.803 kb on - strand at 693.803 kb on - strand at 693.803 kb on - strand at 693.803 kb on - strand at 693.803 kb on - strand at 693.803 kb on - strand at 693.803 kb on - strand at 693.803 kb on - strand at 693.803 kb on - strand at 693.834 kb on + strand at 693.834 kb on + strand at 693.834 kb on + strand at 693.834 kb on + strand at 693.835 kb on - strand at 693.835 kb on - strand at 693.835 kb on - strand at 693.835 kb on - strand at 693.841 kb on - strand at 693.856 kb on + strand at 693.856 kb on + strand at 693.857 kb on - strand at 693.857 kb on - strand at 693.857 kb on - strand at 693.857 kb on - strand at 693.857 kb on - strand at 693.857 kb on - strand at 693.895 kb on - strand, within EX31_RS20320 at 693.940 kb on + strand, within EX31_RS20320 at 693.940 kb on + strand, within EX31_RS20320 at 693.940 kb on + strand, within EX31_RS20320 at 693.940 kb on + strand, within EX31_RS20320 at 693.941 kb on - strand, within EX31_RS20320 at 693.941 kb on - strand, within EX31_RS20320 at 694.009 kb on + strand, within EX31_RS20320 at 694.010 kb on - strand, within EX31_RS20320 at 694.042 kb on + strand, within EX31_RS20320 at 694.042 kb on + strand, within EX31_RS20320 at 694.043 kb on - strand, within EX31_RS20320 at 694.043 kb on - strand, within EX31_RS20320 at 694.093 kb on + strand, within EX31_RS20320 at 694.094 kb on - strand, within EX31_RS20320 at 694.094 kb on - strand, within EX31_RS20320 at 694.170 kb on + strand at 694.170 kb on + strand at 694.171 kb on - strand at 694.171 kb on - strand at 694.269 kb on - strand at 694.269 kb on - strand at 694.375 kb on - strand at 694.375 kb on - strand at 694.471 kb on + strand at 694.490 kb on - strand at 694.502 kb on + strand at 694.503 kb on - strand at 694.506 kb on + strand at 694.507 kb on - strand at 694.507 kb on - strand at 694.507 kb on - strand at 694.507 kb on - strand at 694.510 kb on - strand at 694.576 kb on + strand, within EX31_RS20325 at 694.583 kb on + strand, within EX31_RS20325 at 694.583 kb on + strand, within EX31_RS20325 at 694.584 kb on - strand, within EX31_RS20325 at 694.591 kb on - strand, within EX31_RS20325 at 694.634 kb on + strand, within EX31_RS20325 at 694.634 kb on + strand, within EX31_RS20325 at 694.634 kb on + strand, within EX31_RS20325 at 694.671 kb on + strand, within EX31_RS20325 at 694.671 kb on + strand, within EX31_RS20325 at 694.671 kb on + strand, within EX31_RS20325 at 694.671 kb on + strand, within EX31_RS20325 at 694.672 kb on - strand, within EX31_RS20325 at 694.672 kb on - strand, within EX31_RS20325 at 694.672 kb on - strand, within EX31_RS20325 at 694.672 kb on - strand, within EX31_RS20325 at 694.672 kb on - strand, within EX31_RS20325 at 694.672 kb on - strand, within EX31_RS20325 at 694.672 kb on - strand, within EX31_RS20325 at 694.690 kb on - strand, within EX31_RS20325 at 694.725 kb on + strand, within EX31_RS20325 at 694.907 kb on - strand, within EX31_RS20325 at 694.907 kb on - strand, within EX31_RS20325 at 694.933 kb on + strand, within EX31_RS20325 at 694.933 kb on + strand, within EX31_RS20325 at 694.934 kb on - strand, within EX31_RS20325 at 694.990 kb on + strand, within EX31_RS20325 at 694.990 kb on + strand, within EX31_RS20325 at 694.990 kb on + strand, within EX31_RS20325 at 694.990 kb on + strand, within EX31_RS20325 at 694.990 kb on + strand, within EX31_RS20325 at 694.990 kb on + strand, within EX31_RS20325 at 694.990 kb on + strand, within EX31_RS20325 at 694.991 kb on - strand, within EX31_RS20325 at 694.991 kb on - strand, within EX31_RS20325 at 694.991 kb on - strand, within EX31_RS20325 at 694.991 kb on - strand, within EX31_RS20325 at 694.991 kb on - strand, within EX31_RS20325 at 694.991 kb on - strand, within EX31_RS20325 at 694.991 kb on - strand, within EX31_RS20325 at 694.992 kb on + strand, within EX31_RS20325 at 694.992 kb on + strand, within EX31_RS20325 at 694.992 kb on + strand, within EX31_RS20325 at 694.992 kb on + strand, within EX31_RS20325 at 694.992 kb on + strand, within EX31_RS20325 at 694.992 kb on + strand, within EX31_RS20325 at 694.992 kb on + strand, within EX31_RS20325 at 694.993 kb on - strand, within EX31_RS20325 at 694.993 kb on - strand, within EX31_RS20325 at 695.028 kb on + strand, within EX31_RS20325 at 695.029 kb on - strand, within EX31_RS20325 at 695.087 kb on + strand, within EX31_RS20325 at 695.087 kb on + strand, within EX31_RS20325 at 695.087 kb on + strand, within EX31_RS20325 at 695.087 kb on + strand, within EX31_RS20325 at 695.088 kb on - strand, within EX31_RS20325 at 695.110 kb on - strand, within EX31_RS20325 at 695.118 kb on + strand, within EX31_RS20325 at 695.149 kb on + strand, within EX31_RS20325 at 695.149 kb on + strand, within EX31_RS20325 at 695.149 kb on + strand, within EX31_RS20325 at 695.149 kb on + strand, within EX31_RS20325 at 695.150 kb on - strand, within EX31_RS20325 at 695.150 kb on - strand, within EX31_RS20325 at 695.150 kb on - strand, within EX31_RS20325 at 695.150 kb on - strand, within EX31_RS20325 at 695.150 kb on - strand, within EX31_RS20325 at 695.150 kb on - strand, within EX31_RS20325 at 695.151 kb on + strand, within EX31_RS20325 at 695.151 kb on + strand, within EX31_RS20325 at 695.152 kb on - strand, within EX31_RS20325 at 695.152 kb on - strand, within EX31_RS20325 at 695.152 kb on - strand, within EX31_RS20325 at 695.152 kb on - strand, within EX31_RS20325 at 695.152 kb on - strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.182 kb on + strand, within EX31_RS20325 at 695.183 kb on - strand, within EX31_RS20325 at 695.183 kb on - strand, within EX31_RS20325 at 695.183 kb on - strand, within EX31_RS20325 at 695.183 kb on - strand, within EX31_RS20325 at 695.183 kb on - strand, within EX31_RS20325 at 695.184 kb on + strand, within EX31_RS20325 at 695.184 kb on + strand, within EX31_RS20325 at 695.184 kb on + strand, within EX31_RS20325 at 695.185 kb on - strand, within EX31_RS20325 at 695.185 kb on - strand, within EX31_RS20325 at 695.185 kb on - strand, within EX31_RS20325 at 695.185 kb on - strand, within EX31_RS20325 at 695.187 kb on + strand, within EX31_RS20325
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 692,980 + -0.4 692,980 + +0.2 692,980 + +0.6 693,029 + -0.2 693,029 + +0.8 693,110 + EX31_RS20315 0.20 +1.4 693,289 - EX31_RS20315 0.45 +0.1 693,303 + EX31_RS20315 0.47 +0.5 693,303 + EX31_RS20315 0.47 +0.1 693,355 + EX31_RS20315 0.54 -2.0 693,355 + EX31_RS20315 0.54 +0.9 693,355 + EX31_RS20315 0.54 -0.1 693,355 + EX31_RS20315 0.54 -0.4 693,356 - EX31_RS20315 0.54 +0.4 693,496 - EX31_RS20315 0.73 +0.8 693,532 - EX31_RS20315 0.78 +0.0 693,626 + -1.2 693,637 + +0.9 693,637 + -2.3 693,640 - +1.5 693,640 - +0.2 693,640 - -0.3 693,759 - +0.4 693,792 + -0.2 693,793 - -1.0 693,793 - -0.8 693,793 - -2.7 693,793 - -0.1 693,796 + +0.2 693,796 + -1.7 693,796 + +1.2 693,797 - +0.8 693,797 - -1.2 693,802 + -1.5 693,802 + -0.8 693,802 + +2.5 693,802 + -0.3 693,802 + +1.8 693,802 + +0.7 693,803 - +0.8 693,803 - +0.0 693,803 - -0.6 693,803 - -0.3 693,803 - -1.1 693,803 - +0.2 693,803 - +0.3 693,803 - +0.7 693,803 - -0.6 693,803 - +0.5 693,803 - -0.3 693,834 + +3.4 693,834 + -0.4 693,834 + +0.1 693,834 + -0.2 693,835 - +0.8 693,835 - -1.0 693,835 - +1.5 693,835 - +1.5 693,841 - +1.4 693,856 + -0.9 693,856 + +0.2 693,857 - -0.4 693,857 - +0.1 693,857 - +0.7 693,857 - +0.2 693,857 - -1.4 693,857 - +0.3 693,895 - EX31_RS20320 0.16 -1.0 693,940 + EX31_RS20320 0.28 -0.5 693,940 + EX31_RS20320 0.28 +0.6 693,940 + EX31_RS20320 0.28 +0.7 693,940 + EX31_RS20320 0.28 -1.7 693,941 - EX31_RS20320 0.29 -0.7 693,941 - EX31_RS20320 0.29 -0.7 694,009 + EX31_RS20320 0.48 -0.5 694,010 - EX31_RS20320 0.49 -0.8 694,042 + EX31_RS20320 0.58 -0.2 694,042 + EX31_RS20320 0.58 -0.7 694,043 - EX31_RS20320 0.58 +0.6 694,043 - EX31_RS20320 0.58 +0.4 694,093 + EX31_RS20320 0.72 +0.8 694,094 - EX31_RS20320 0.73 +0.2 694,094 - EX31_RS20320 0.73 -0.2 694,170 + +1.5 694,170 + +1.1 694,171 - -1.2 694,171 - +1.3 694,269 - -0.2 694,269 - -0.5 694,375 - +0.1 694,375 - -0.8 694,471 + +0.6 694,490 - -0.1 694,502 + -1.5 694,503 - +2.4 694,506 + -0.9 694,507 - -0.5 694,507 - +0.7 694,507 - +0.2 694,507 - +0.9 694,510 - -0.2 694,576 + EX31_RS20325 0.15 -0.7 694,583 + EX31_RS20325 0.15 -0.2 694,583 + EX31_RS20325 0.15 +0.3 694,584 - EX31_RS20325 0.15 +0.1 694,591 - EX31_RS20325 0.16 -0.0 694,634 + EX31_RS20325 0.19 +1.1 694,634 + EX31_RS20325 0.19 +0.5 694,634 + EX31_RS20325 0.19 +1.3 694,671 + EX31_RS20325 0.21 -1.0 694,671 + EX31_RS20325 0.21 -0.0 694,671 + EX31_RS20325 0.21 +1.8 694,671 + EX31_RS20325 0.21 +0.2 694,672 - EX31_RS20325 0.21 -2.0 694,672 - EX31_RS20325 0.21 +0.6 694,672 - EX31_RS20325 0.21 +1.2 694,672 - EX31_RS20325 0.21 -1.8 694,672 - EX31_RS20325 0.21 -1.5 694,672 - EX31_RS20325 0.21 -0.4 694,672 - EX31_RS20325 0.21 +0.1 694,690 - EX31_RS20325 0.23 +0.3 694,725 + EX31_RS20325 0.25 -0.4 694,907 - EX31_RS20325 0.38 +1.3 694,907 - EX31_RS20325 0.38 -0.2 694,933 + EX31_RS20325 0.40 -0.2 694,933 + EX31_RS20325 0.40 -1.2 694,934 - EX31_RS20325 0.40 -1.7 694,990 + EX31_RS20325 0.44 -0.5 694,990 + EX31_RS20325 0.44 +0.7 694,990 + EX31_RS20325 0.44 +2.2 694,990 + EX31_RS20325 0.44 -2.5 694,990 + EX31_RS20325 0.44 +0.8 694,990 + EX31_RS20325 0.44 +0.4 694,990 + EX31_RS20325 0.44 +0.1 694,991 - EX31_RS20325 0.44 -0.1 694,991 - EX31_RS20325 0.44 +0.7 694,991 - EX31_RS20325 0.44 -0.2 694,991 - EX31_RS20325 0.44 +2.0 694,991 - EX31_RS20325 0.44 -0.4 694,991 - EX31_RS20325 0.44 -1.8 694,991 - EX31_RS20325 0.44 +0.2 694,992 + EX31_RS20325 0.45 -0.5 694,992 + EX31_RS20325 0.45 -0.6 694,992 + EX31_RS20325 0.45 -0.8 694,992 + EX31_RS20325 0.45 -0.2 694,992 + EX31_RS20325 0.45 +0.1 694,992 + EX31_RS20325 0.45 -1.3 694,992 + EX31_RS20325 0.45 +0.8 694,993 - EX31_RS20325 0.45 +1.3 694,993 - EX31_RS20325 0.45 +0.4 695,028 + EX31_RS20325 0.47 -0.5 695,029 - EX31_RS20325 0.47 -0.1 695,087 + EX31_RS20325 0.51 -0.0 695,087 + EX31_RS20325 0.51 -0.3 695,087 + EX31_RS20325 0.51 -0.3 695,087 + EX31_RS20325 0.51 -0.3 695,088 - EX31_RS20325 0.51 -1.9 695,110 - EX31_RS20325 0.53 +1.4 695,118 + EX31_RS20325 0.54 +0.2 695,149 + EX31_RS20325 0.56 +1.2 695,149 + EX31_RS20325 0.56 -1.4 695,149 + EX31_RS20325 0.56 -1.8 695,149 + EX31_RS20325 0.56 -1.8 695,150 - EX31_RS20325 0.56 -0.7 695,150 - EX31_RS20325 0.56 +0.4 695,150 - EX31_RS20325 0.56 +0.2 695,150 - EX31_RS20325 0.56 +1.0 695,150 - EX31_RS20325 0.56 -0.3 695,150 - EX31_RS20325 0.56 +0.3 695,151 + EX31_RS20325 0.56 +1.0 695,151 + EX31_RS20325 0.56 +0.4 695,152 - EX31_RS20325 0.56 +1.4 695,152 - EX31_RS20325 0.56 -1.0 695,152 - EX31_RS20325 0.56 -1.3 695,152 - EX31_RS20325 0.56 +0.1 695,152 - EX31_RS20325 0.56 +0.5 695,182 + EX31_RS20325 0.58 +0.9 695,182 + EX31_RS20325 0.58 -0.6 695,182 + EX31_RS20325 0.58 +0.5 695,182 + EX31_RS20325 0.58 +0.6 695,182 + EX31_RS20325 0.58 +0.1 695,182 + EX31_RS20325 0.58 -0.5 695,182 + EX31_RS20325 0.58 -0.2 695,182 + EX31_RS20325 0.58 +0.3 695,182 + EX31_RS20325 0.58 +1.6 695,182 + EX31_RS20325 0.58 -0.4 695,182 + EX31_RS20325 0.58 -0.5 695,182 + EX31_RS20325 0.58 -0.2 695,182 + EX31_RS20325 0.58 +0.1 695,182 + EX31_RS20325 0.58 +0.8 695,182 + EX31_RS20325 0.58 -1.2 695,182 + EX31_RS20325 0.58 +0.6 695,182 + EX31_RS20325 0.58 +1.5 695,182 + EX31_RS20325 0.58 -1.0 695,182 + EX31_RS20325 0.58 -1.7 695,182 + EX31_RS20325 0.58 +1.4 695,183 - EX31_RS20325 0.58 +0.4 695,183 - EX31_RS20325 0.58 +0.1 695,183 - EX31_RS20325 0.58 -0.4 695,183 - EX31_RS20325 0.58 +1.1 695,183 - EX31_RS20325 0.58 -1.5 695,184 + EX31_RS20325 0.58 +0.2 695,184 + EX31_RS20325 0.58 -0.2 695,184 + EX31_RS20325 0.58 -0.9 695,185 - EX31_RS20325 0.58 -0.4 695,185 - EX31_RS20325 0.58 +1.3 695,185 - EX31_RS20325 0.58 -1.8 695,185 - EX31_RS20325 0.58 -1.2 695,187 + EX31_RS20325 0.59 +1.6
Or see this region's nucleotide sequence