Strain Fitness in Rahnella sp. WP5 around EX31_RS19495

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19490 and EX31_RS19495 overlap by 8 nucleotidesEX31_RS19495 and EX31_RS19500 are separated by 104 nucleotides EX31_RS19490: EX31_RS19490 - transketolase family protein, at 528,988 to 529,941 _RS19490 EX31_RS19495: EX31_RS19495 - transketolase, at 529,934 to 530,767 _RS19495 EX31_RS19500: EX31_RS19500 - PTS ascorbate transporter subunit IIC, at 530,872 to 532,248 _RS19500 Position (kb) 529 530 531Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 529.017 kb on + strandat 529.017 kb on + strandat 529.018 kb on - strandat 529.037 kb on + strandat 529.164 kb on + strand, within EX31_RS19490at 529.165 kb on - strand, within EX31_RS19490at 529.165 kb on - strand, within EX31_RS19490at 529.165 kb on - strand, within EX31_RS19490at 529.165 kb on - strand, within EX31_RS19490at 529.165 kb on - strand, within EX31_RS19490at 529.165 kb on - strand, within EX31_RS19490at 529.208 kb on + strand, within EX31_RS19490at 529.209 kb on - strand, within EX31_RS19490at 529.245 kb on + strand, within EX31_RS19490at 529.321 kb on - strand, within EX31_RS19490at 529.321 kb on - strand, within EX31_RS19490at 529.384 kb on - strand, within EX31_RS19490at 529.384 kb on - strand, within EX31_RS19490at 529.432 kb on - strand, within EX31_RS19490at 529.546 kb on - strand, within EX31_RS19490at 529.546 kb on - strand, within EX31_RS19490at 529.560 kb on + strand, within EX31_RS19490at 529.560 kb on + strand, within EX31_RS19490at 529.560 kb on + strand, within EX31_RS19490at 529.560 kb on + strand, within EX31_RS19490at 529.560 kb on + strand, within EX31_RS19490at 529.560 kb on + strand, within EX31_RS19490at 529.561 kb on - strand, within EX31_RS19490at 529.561 kb on - strand, within EX31_RS19490at 529.561 kb on - strand, within EX31_RS19490at 529.561 kb on - strand, within EX31_RS19490at 529.561 kb on - strand, within EX31_RS19490at 529.561 kb on - strand, within EX31_RS19490at 529.621 kb on - strand, within EX31_RS19490at 529.621 kb on - strand, within EX31_RS19490at 529.621 kb on - strand, within EX31_RS19490at 529.644 kb on + strand, within EX31_RS19490at 529.645 kb on - strand, within EX31_RS19490at 529.645 kb on - strand, within EX31_RS19490at 529.645 kb on - strand, within EX31_RS19490at 529.645 kb on - strand, within EX31_RS19490at 529.645 kb on - strand, within EX31_RS19490at 529.645 kb on - strand, within EX31_RS19490at 529.645 kb on - strand, within EX31_RS19490at 529.689 kb on + strand, within EX31_RS19490at 529.690 kb on - strand, within EX31_RS19490at 529.690 kb on - strand, within EX31_RS19490at 529.768 kb on - strand, within EX31_RS19490at 529.796 kb on - strand, within EX31_RS19490at 529.858 kb on + strandat 529.887 kb on - strandat 530.035 kb on - strand, within EX31_RS19495at 530.035 kb on - strand, within EX31_RS19495at 530.035 kb on - strand, within EX31_RS19495at 530.035 kb on - strand, within EX31_RS19495at 530.153 kb on + strand, within EX31_RS19495at 530.153 kb on + strand, within EX31_RS19495at 530.153 kb on + strand, within EX31_RS19495at 530.154 kb on - strand, within EX31_RS19495at 530.154 kb on - strand, within EX31_RS19495at 530.154 kb on - strand, within EX31_RS19495at 530.154 kb on - strand, within EX31_RS19495at 530.154 kb on - strand, within EX31_RS19495at 530.154 kb on - strand, within EX31_RS19495at 530.154 kb on - strand, within EX31_RS19495at 530.154 kb on - strand, within EX31_RS19495at 530.200 kb on + strand, within EX31_RS19495at 530.201 kb on - strand, within EX31_RS19495at 530.201 kb on - strand, within EX31_RS19495at 530.241 kb on + strand, within EX31_RS19495at 530.284 kb on + strand, within EX31_RS19495at 530.284 kb on + strand, within EX31_RS19495at 530.372 kb on - strand, within EX31_RS19495at 530.501 kb on + strand, within EX31_RS19495at 530.502 kb on - strand, within EX31_RS19495at 530.544 kb on + strand, within EX31_RS19495at 530.544 kb on + strand, within EX31_RS19495at 530.544 kb on + strand, within EX31_RS19495at 530.544 kb on + strand, within EX31_RS19495at 530.583 kb on + strand, within EX31_RS19495at 530.584 kb on - strand, within EX31_RS19495at 530.638 kb on - strand, within EX31_RS19495at 530.638 kb on - strand, within EX31_RS19495at 530.679 kb on + strand, within EX31_RS19495at 530.728 kb on + strandat 530.729 kb on - strandat 530.774 kb on + strandat 530.774 kb on + strandat 530.775 kb on - strandat 530.775 kb on - strandat 530.775 kb on - strandat 530.775 kb on - strandat 530.786 kb on + strandat 530.787 kb on - strandat 530.797 kb on + strandat 530.798 kb on - strandat 530.798 kb on - strandat 530.816 kb on + strandat 530.817 kb on - strandat 530.858 kb on - strandat 530.858 kb on - strandat 530.873 kb on + strandat 530.874 kb on - strandat 530.874 kb on - strandat 530.918 kb on + strandat 530.918 kb on + strandat 530.918 kb on + strandat 530.919 kb on - strandat 530.919 kb on - strandat 530.919 kb on - strandat 530.919 kb on - strandat 530.947 kb on - strandat 530.947 kb on - strandat 530.982 kb on + strandat 531.049 kb on - strand, within EX31_RS19500at 531.100 kb on - strand, within EX31_RS19500at 531.100 kb on - strand, within EX31_RS19500at 531.100 kb on - strand, within EX31_RS19500at 531.100 kb on - strand, within EX31_RS19500at 531.167 kb on - strand, within EX31_RS19500at 531.167 kb on - strand, within EX31_RS19500at 531.167 kb on - strand, within EX31_RS19500at 531.308 kb on + strand, within EX31_RS19500at 531.349 kb on - strand, within EX31_RS19500at 531.448 kb on - strand, within EX31_RS19500at 531.448 kb on - strand, within EX31_RS19500at 531.467 kb on + strand, within EX31_RS19500at 531.468 kb on - strand, within EX31_RS19500at 531.476 kb on + strand, within EX31_RS19500at 531.476 kb on + strand, within EX31_RS19500at 531.477 kb on - strand, within EX31_RS19500at 531.477 kb on - strand, within EX31_RS19500at 531.494 kb on + strand, within EX31_RS19500at 531.494 kb on + strand, within EX31_RS19500at 531.495 kb on - strand, within EX31_RS19500at 531.495 kb on - strand, within EX31_RS19500at 531.495 kb on - strand, within EX31_RS19500at 531.535 kb on - strand, within EX31_RS19500at 531.543 kb on - strand, within EX31_RS19500at 531.546 kb on + strand, within EX31_RS19500at 531.546 kb on + strand, within EX31_RS19500at 531.546 kb on + strand, within EX31_RS19500at 531.546 kb on + strand, within EX31_RS19500at 531.547 kb on - strand, within EX31_RS19500at 531.547 kb on - strand, within EX31_RS19500at 531.547 kb on - strand, within EX31_RS19500at 531.547 kb on - strand, within EX31_RS19500at 531.547 kb on - strand, within EX31_RS19500at 531.547 kb on - strand, within EX31_RS19500at 531.547 kb on - strand, within EX31_RS19500at 531.567 kb on + strand, within EX31_RS19500at 531.568 kb on - strand, within EX31_RS19500at 531.625 kb on - strand, within EX31_RS19500at 531.668 kb on - strand, within EX31_RS19500at 531.674 kb on + strand, within EX31_RS19500at 531.734 kb on + strand, within EX31_RS19500at 531.734 kb on + strand, within EX31_RS19500at 531.734 kb on + strand, within EX31_RS19500at 531.734 kb on + strand, within EX31_RS19500at 531.735 kb on - strand, within EX31_RS19500at 531.735 kb on - strand, within EX31_RS19500at 531.735 kb on - strand, within EX31_RS19500at 531.735 kb on - strand, within EX31_RS19500at 531.735 kb on - strand, within EX31_RS19500at 531.735 kb on - strand, within EX31_RS19500at 531.735 kb on - strand, within EX31_RS19500

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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529,017 + -0.3
529,017 + -0.9
529,018 - -0.4
529,037 + -0.1
529,164 + EX31_RS19490 0.18 -0.9
529,165 - EX31_RS19490 0.19 +0.5
529,165 - EX31_RS19490 0.19 +0.7
529,165 - EX31_RS19490 0.19 +1.2
529,165 - EX31_RS19490 0.19 +0.1
529,165 - EX31_RS19490 0.19 -0.1
529,165 - EX31_RS19490 0.19 +0.7
529,208 + EX31_RS19490 0.23 -0.5
529,209 - EX31_RS19490 0.23 -1.0
529,245 + EX31_RS19490 0.27 +1.5
529,321 - EX31_RS19490 0.35 -0.1
529,321 - EX31_RS19490 0.35 -0.3
529,384 - EX31_RS19490 0.42 +0.7
529,384 - EX31_RS19490 0.42 -0.3
529,432 - EX31_RS19490 0.47 +0.7
529,546 - EX31_RS19490 0.58 +0.5
529,546 - EX31_RS19490 0.58 -0.4
529,560 + EX31_RS19490 0.60 +0.1
529,560 + EX31_RS19490 0.60 +0.7
529,560 + EX31_RS19490 0.60 +0.3
529,560 + EX31_RS19490 0.60 +0.7
529,560 + EX31_RS19490 0.60 +0.2
529,560 + EX31_RS19490 0.60 +0.4
529,561 - EX31_RS19490 0.60 -1.3
529,561 - EX31_RS19490 0.60 +0.0
529,561 - EX31_RS19490 0.60 +0.7
529,561 - EX31_RS19490 0.60 +1.1
529,561 - EX31_RS19490 0.60 +3.3
529,561 - EX31_RS19490 0.60 +2.1
529,621 - EX31_RS19490 0.66 +0.1
529,621 - EX31_RS19490 0.66 +0.0
529,621 - EX31_RS19490 0.66 +1.0
529,644 + EX31_RS19490 0.69 -0.1
529,645 - EX31_RS19490 0.69 +0.1
529,645 - EX31_RS19490 0.69 -1.0
529,645 - EX31_RS19490 0.69 +0.2
529,645 - EX31_RS19490 0.69 +1.6
529,645 - EX31_RS19490 0.69 +0.4
529,645 - EX31_RS19490 0.69 +3.5
529,645 - EX31_RS19490 0.69 +1.0
529,689 + EX31_RS19490 0.73 -1.3
529,690 - EX31_RS19490 0.74 -0.3
529,690 - EX31_RS19490 0.74 +1.1
529,768 - EX31_RS19490 0.82 -0.9
529,796 - EX31_RS19490 0.85 -1.4
529,858 + +0.7
529,887 - -1.1
530,035 - EX31_RS19495 0.12 +0.3
530,035 - EX31_RS19495 0.12 -0.3
530,035 - EX31_RS19495 0.12 -0.9
530,035 - EX31_RS19495 0.12 +0.2
530,153 + EX31_RS19495 0.26 +0.1
530,153 + EX31_RS19495 0.26 -0.9
530,153 + EX31_RS19495 0.26 -0.2
530,154 - EX31_RS19495 0.26 +0.6
530,154 - EX31_RS19495 0.26 +0.5
530,154 - EX31_RS19495 0.26 +1.1
530,154 - EX31_RS19495 0.26 +1.7
530,154 - EX31_RS19495 0.26 +0.5
530,154 - EX31_RS19495 0.26 +0.9
530,154 - EX31_RS19495 0.26 +0.4
530,154 - EX31_RS19495 0.26 +0.4
530,200 + EX31_RS19495 0.32 +0.8
530,201 - EX31_RS19495 0.32 -0.7
530,201 - EX31_RS19495 0.32 +0.7
530,241 + EX31_RS19495 0.37 -0.1
530,284 + EX31_RS19495 0.42 -1.6
530,284 + EX31_RS19495 0.42 +0.7
530,372 - EX31_RS19495 0.53 -1.2
530,501 + EX31_RS19495 0.68 +0.1
530,502 - EX31_RS19495 0.68 +0.5
530,544 + EX31_RS19495 0.73 -0.0
530,544 + EX31_RS19495 0.73 +2.3
530,544 + EX31_RS19495 0.73 -2.7
530,544 + EX31_RS19495 0.73 -0.6
530,583 + EX31_RS19495 0.78 +0.7
530,584 - EX31_RS19495 0.78 -0.3
530,638 - EX31_RS19495 0.84 -1.3
530,638 - EX31_RS19495 0.84 +1.6
530,679 + EX31_RS19495 0.89 -1.6
530,728 + +0.2
530,729 - -0.5
530,774 + +1.1
530,774 + -0.3
530,775 - +0.3
530,775 - -0.3
530,775 - +1.4
530,775 - -1.3
530,786 + +1.2
530,787 - -0.1
530,797 + -0.6
530,798 - -0.7
530,798 - +0.9
530,816 + +0.4
530,817 - -0.3
530,858 - +0.9
530,858 - +1.4
530,873 + -0.3
530,874 - -2.1
530,874 - -2.5
530,918 + +1.8
530,918 + +0.1
530,918 + +0.7
530,919 - -2.6
530,919 - -0.1
530,919 - -0.6
530,919 - -0.6
530,947 - -0.5
530,947 - +0.6
530,982 + +0.5
531,049 - EX31_RS19500 0.13 +0.7
531,100 - EX31_RS19500 0.17 +0.7
531,100 - EX31_RS19500 0.17 -0.4
531,100 - EX31_RS19500 0.17 -3.3
531,100 - EX31_RS19500 0.17 -0.3
531,167 - EX31_RS19500 0.21 +1.5
531,167 - EX31_RS19500 0.21 -0.2
531,167 - EX31_RS19500 0.21 +1.0
531,308 + EX31_RS19500 0.32 -0.5
531,349 - EX31_RS19500 0.35 +0.5
531,448 - EX31_RS19500 0.42 +0.7
531,448 - EX31_RS19500 0.42 -0.9
531,467 + EX31_RS19500 0.43 +0.2
531,468 - EX31_RS19500 0.43 +0.7
531,476 + EX31_RS19500 0.44 +0.7
531,476 + EX31_RS19500 0.44 -0.9
531,477 - EX31_RS19500 0.44 +0.7
531,477 - EX31_RS19500 0.44 +2.0
531,494 + EX31_RS19500 0.45 -0.3
531,494 + EX31_RS19500 0.45 +1.3
531,495 - EX31_RS19500 0.45 +0.9
531,495 - EX31_RS19500 0.45 -0.6
531,495 - EX31_RS19500 0.45 +0.5
531,535 - EX31_RS19500 0.48 +1.1
531,543 - EX31_RS19500 0.49 +2.3
531,546 + EX31_RS19500 0.49 -0.7
531,546 + EX31_RS19500 0.49 +1.4
531,546 + EX31_RS19500 0.49 +0.7
531,546 + EX31_RS19500 0.49 +0.3
531,547 - EX31_RS19500 0.49 -0.3
531,547 - EX31_RS19500 0.49 -0.2
531,547 - EX31_RS19500 0.49 -0.4
531,547 - EX31_RS19500 0.49 -0.9
531,547 - EX31_RS19500 0.49 -1.2
531,547 - EX31_RS19500 0.49 -1.9
531,547 - EX31_RS19500 0.49 +0.7
531,567 + EX31_RS19500 0.50 -0.5
531,568 - EX31_RS19500 0.51 -1.4
531,625 - EX31_RS19500 0.55 +0.2
531,668 - EX31_RS19500 0.58 +1.1
531,674 + EX31_RS19500 0.58 +0.7
531,734 + EX31_RS19500 0.63 +0.1
531,734 + EX31_RS19500 0.63 -0.3
531,734 + EX31_RS19500 0.63 +0.1
531,734 + EX31_RS19500 0.63 +2.3
531,735 - EX31_RS19500 0.63 +3.3
531,735 - EX31_RS19500 0.63 +0.6
531,735 - EX31_RS19500 0.63 -1.3
531,735 - EX31_RS19500 0.63 +1.2
531,735 - EX31_RS19500 0.63 -0.3
531,735 - EX31_RS19500 0.63 -0.5
531,735 - EX31_RS19500 0.63 +1.7

Or see this region's nucleotide sequence