Strain Fitness in Rahnella sp. WP5 around EX31_RS18800

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18785 and EX31_RS18790 overlap by 4 nucleotidesEX31_RS18790 and EX31_RS18795 are separated by 27 nucleotidesEX31_RS18795 and EX31_RS18800 are separated by 3 nucleotidesEX31_RS18800 and EX31_RS18805 are separated by 101 nucleotides EX31_RS18785: EX31_RS18785 - DUF2384 domain-containing protein, at 342,848 to 343,309 _RS18785 EX31_RS18790: EX31_RS18790 - RES domain-containing protein, at 343,306 to 343,764 _RS18790 EX31_RS18795: EX31_RS18795 - DMT family transporter, at 343,792 to 344,244 _RS18795 EX31_RS18800: EX31_RS18800 - DMT family transporter, at 344,248 to 344,682 _RS18800 EX31_RS18805: EX31_RS18805 - LysR family transcriptional regulator, at 344,784 to 345,713 _RS18805 Position (kb) 344 345Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 343.321 kb on - strandat 343.376 kb on - strand, within EX31_RS18790at 343.414 kb on + strand, within EX31_RS18790at 343.414 kb on + strand, within EX31_RS18790at 343.414 kb on + strand, within EX31_RS18790at 343.490 kb on - strand, within EX31_RS18790at 343.491 kb on + strand, within EX31_RS18790at 343.491 kb on + strand, within EX31_RS18790at 343.491 kb on + strand, within EX31_RS18790at 343.492 kb on - strand, within EX31_RS18790at 343.492 kb on - strand, within EX31_RS18790at 343.627 kb on + strand, within EX31_RS18790at 343.627 kb on + strand, within EX31_RS18790at 343.627 kb on + strand, within EX31_RS18790at 343.627 kb on + strand, within EX31_RS18790at 343.628 kb on - strand, within EX31_RS18790at 343.669 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.677 kb on - strand, within EX31_RS18790at 343.677 kb on - strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.680 kb on - strand, within EX31_RS18790at 343.680 kb on - strand, within EX31_RS18790at 343.680 kb on - strand, within EX31_RS18790at 343.683 kb on + strand, within EX31_RS18790at 343.839 kb on + strand, within EX31_RS18795at 343.839 kb on + strand, within EX31_RS18795at 343.840 kb on - strand, within EX31_RS18795at 344.006 kb on + strand, within EX31_RS18795at 344.006 kb on + strand, within EX31_RS18795at 344.006 kb on + strand, within EX31_RS18795at 344.006 kb on + strand, within EX31_RS18795at 344.006 kb on + strand, within EX31_RS18795at 344.007 kb on - strand, within EX31_RS18795at 344.007 kb on - strand, within EX31_RS18795at 344.007 kb on - strand, within EX31_RS18795at 344.020 kb on + strand, within EX31_RS18795at 344.020 kb on + strand, within EX31_RS18795at 344.104 kb on - strand, within EX31_RS18795at 344.165 kb on - strand, within EX31_RS18795at 344.191 kb on - strand, within EX31_RS18795at 344.221 kb on + strandat 344.222 kb on - strandat 344.222 kb on - strandat 344.224 kb on + strandat 344.224 kb on + strandat 344.225 kb on - strandat 344.225 kb on - strandat 344.225 kb on - strandat 344.346 kb on - strand, within EX31_RS18800at 344.447 kb on + strand, within EX31_RS18800at 344.447 kb on + strand, within EX31_RS18800at 344.447 kb on + strand, within EX31_RS18800at 344.447 kb on + strand, within EX31_RS18800at 344.448 kb on - strand, within EX31_RS18800at 344.448 kb on - strand, within EX31_RS18800at 344.448 kb on - strand, within EX31_RS18800at 344.448 kb on - strand, within EX31_RS18800at 344.448 kb on - strand, within EX31_RS18800at 344.448 kb on - strand, within EX31_RS18800at 344.448 kb on - strand, within EX31_RS18800at 344.568 kb on + strand, within EX31_RS18800at 344.568 kb on + strand, within EX31_RS18800at 344.569 kb on - strand, within EX31_RS18800at 344.718 kb on + strandat 344.718 kb on + strandat 344.720 kb on + strandat 344.720 kb on + strandat 344.720 kb on + strandat 344.720 kb on + strandat 344.721 kb on - strandat 344.721 kb on - strandat 344.762 kb on + strandat 344.763 kb on - strandat 344.775 kb on + strandat 344.795 kb on + strandat 344.807 kb on + strandat 344.808 kb on - strandat 344.808 kb on - strandat 344.819 kb on - strandat 344.826 kb on + strandat 344.826 kb on + strandat 344.826 kb on + strandat 344.826 kb on + strandat 344.826 kb on + strandat 344.827 kb on - strandat 344.929 kb on + strand, within EX31_RS18805at 344.929 kb on + strand, within EX31_RS18805at 344.929 kb on + strand, within EX31_RS18805at 344.929 kb on + strand, within EX31_RS18805at 344.929 kb on + strand, within EX31_RS18805at 344.946 kb on + strand, within EX31_RS18805at 345.143 kb on + strand, within EX31_RS18805at 345.144 kb on - strand, within EX31_RS18805at 345.192 kb on - strand, within EX31_RS18805at 345.309 kb on + strand, within EX31_RS18805at 345.309 kb on + strand, within EX31_RS18805at 345.402 kb on + strand, within EX31_RS18805at 345.451 kb on + strand, within EX31_RS18805at 345.464 kb on + strand, within EX31_RS18805at 345.465 kb on - strand, within EX31_RS18805at 345.465 kb on - strand, within EX31_RS18805at 345.465 kb on - strand, within EX31_RS18805at 345.580 kb on - strand, within EX31_RS18805at 345.586 kb on + strand, within EX31_RS18805

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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343,321 - +1.2
343,376 - EX31_RS18790 0.15 -1.2
343,414 + EX31_RS18790 0.24 -0.2
343,414 + EX31_RS18790 0.24 -1.2
343,414 + EX31_RS18790 0.24 -1.3
343,490 - EX31_RS18790 0.40 -0.9
343,491 + EX31_RS18790 0.40 -0.1
343,491 + EX31_RS18790 0.40 +0.9
343,491 + EX31_RS18790 0.40 +0.6
343,492 - EX31_RS18790 0.41 +1.1
343,492 - EX31_RS18790 0.41 -0.7
343,627 + EX31_RS18790 0.70 +0.5
343,627 + EX31_RS18790 0.70 +0.6
343,627 + EX31_RS18790 0.70 +1.4
343,627 + EX31_RS18790 0.70 +0.6
343,628 - EX31_RS18790 0.70 -0.2
343,669 + EX31_RS18790 0.79 -0.0
343,676 + EX31_RS18790 0.81 +0.4
343,676 + EX31_RS18790 0.81 +0.1
343,676 + EX31_RS18790 0.81 +1.3
343,676 + EX31_RS18790 0.81 -0.2
343,676 + EX31_RS18790 0.81 +0.4
343,676 + EX31_RS18790 0.81 +0.1
343,676 + EX31_RS18790 0.81 +0.1
343,676 + EX31_RS18790 0.81 -0.7
343,677 - EX31_RS18790 0.81 +0.2
343,677 - EX31_RS18790 0.81 -0.4
343,679 + EX31_RS18790 0.81 +0.3
343,679 + EX31_RS18790 0.81 +0.2
343,679 + EX31_RS18790 0.81 -1.3
343,679 + EX31_RS18790 0.81 +0.2
343,679 + EX31_RS18790 0.81 -0.8
343,679 + EX31_RS18790 0.81 -0.1
343,679 + EX31_RS18790 0.81 +0.9
343,680 - EX31_RS18790 0.81 -2.4
343,680 - EX31_RS18790 0.81 -1.2
343,680 - EX31_RS18790 0.81 -0.9
343,683 + EX31_RS18790 0.82 -0.6
343,839 + EX31_RS18795 0.10 -1.4
343,839 + EX31_RS18795 0.10 -1.1
343,840 - EX31_RS18795 0.11 -1.9
344,006 + EX31_RS18795 0.47 -0.1
344,006 + EX31_RS18795 0.47 -0.9
344,006 + EX31_RS18795 0.47 +0.5
344,006 + EX31_RS18795 0.47 +0.3
344,006 + EX31_RS18795 0.47 +0.6
344,007 - EX31_RS18795 0.47 +1.0
344,007 - EX31_RS18795 0.47 -0.3
344,007 - EX31_RS18795 0.47 +0.9
344,020 + EX31_RS18795 0.50 -0.0
344,020 + EX31_RS18795 0.50 -1.7
344,104 - EX31_RS18795 0.69 -2.9
344,165 - EX31_RS18795 0.82 -1.6
344,191 - EX31_RS18795 0.88 +0.4
344,221 + +2.2
344,222 - +0.4
344,222 - +0.4
344,224 + +1.9
344,224 + +0.6
344,225 - +3.2
344,225 - +0.6
344,225 - -0.9
344,346 - EX31_RS18800 0.23 +0.4
344,447 + EX31_RS18800 0.46 +1.6
344,447 + EX31_RS18800 0.46 -0.4
344,447 + EX31_RS18800 0.46 -0.4
344,447 + EX31_RS18800 0.46 +0.6
344,448 - EX31_RS18800 0.46 -0.4
344,448 - EX31_RS18800 0.46 -0.5
344,448 - EX31_RS18800 0.46 -0.4
344,448 - EX31_RS18800 0.46 +0.1
344,448 - EX31_RS18800 0.46 -1.4
344,448 - EX31_RS18800 0.46 -0.7
344,448 - EX31_RS18800 0.46 -0.3
344,568 + EX31_RS18800 0.74 -0.9
344,568 + EX31_RS18800 0.74 -0.4
344,569 - EX31_RS18800 0.74 +1.2
344,718 + -0.6
344,718 + +0.4
344,720 + -0.2
344,720 + +0.5
344,720 + +0.6
344,720 + -1.8
344,721 - -2.6
344,721 - +1.6
344,762 + +0.2
344,763 - +0.9
344,775 + +0.6
344,795 + -0.1
344,807 + -0.3
344,808 - +2.6
344,808 - +1.6
344,819 - +1.5
344,826 + +0.6
344,826 + -0.2
344,826 + +1.8
344,826 + +0.5
344,826 + +0.6
344,827 - -1.2
344,929 + EX31_RS18805 0.16 -0.4
344,929 + EX31_RS18805 0.16 +3.8
344,929 + EX31_RS18805 0.16 -0.1
344,929 + EX31_RS18805 0.16 -0.4
344,929 + EX31_RS18805 0.16 +1.0
344,946 + EX31_RS18805 0.17 +1.1
345,143 + EX31_RS18805 0.39 +1.3
345,144 - EX31_RS18805 0.39 -2.2
345,192 - EX31_RS18805 0.44 +1.6
345,309 + EX31_RS18805 0.56 -0.9
345,309 + EX31_RS18805 0.56 -2.1
345,402 + EX31_RS18805 0.66 +0.5
345,451 + EX31_RS18805 0.72 +0.2
345,464 + EX31_RS18805 0.73 +1.1
345,465 - EX31_RS18805 0.73 +0.9
345,465 - EX31_RS18805 0.73 -0.6
345,465 - EX31_RS18805 0.73 +0.4
345,580 - EX31_RS18805 0.86 -0.3
345,586 + EX31_RS18805 0.86 +2.2

Or see this region's nucleotide sequence