Strain Fitness in Rahnella sp. WP5 around EX31_RS18700

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18695 and EX31_RS18700 are separated by 175 nucleotidesEX31_RS18700 and EX31_RS18705 are separated by 125 nucleotides EX31_RS18695: EX31_RS18695 - DUF418 family protein, at 319,455 to 320,609 _RS18695 EX31_RS18700: EX31_RS18700 - GTP cyclohydrolase I FolE, at 320,785 to 321,450 _RS18700 EX31_RS18705: EX31_RS18705 - YbfB/YjiJ family MFS transporter, at 321,576 to 322,703 _RS18705 Position (kb) 320 321 322Strain fitness (log2 ratio) -2 -1 0 1 2at 319.977 kb on - strand, within EX31_RS18695at 319.977 kb on - strand, within EX31_RS18695at 320.005 kb on + strand, within EX31_RS18695at 320.151 kb on - strand, within EX31_RS18695at 320.151 kb on - strand, within EX31_RS18695at 320.154 kb on - strand, within EX31_RS18695at 320.154 kb on - strand, within EX31_RS18695at 320.288 kb on + strand, within EX31_RS18695at 320.289 kb on - strand, within EX31_RS18695at 320.332 kb on - strand, within EX31_RS18695at 320.335 kb on - strand, within EX31_RS18695at 320.382 kb on + strand, within EX31_RS18695at 320.597 kb on + strandat 320.598 kb on - strandat 320.639 kb on + strandat 320.639 kb on + strandat 320.639 kb on + strandat 320.639 kb on + strandat 320.639 kb on + strandat 320.643 kb on + strandat 320.643 kb on + strandat 320.683 kb on + strandat 320.683 kb on + strandat 320.684 kb on - strandat 320.684 kb on - strandat 320.714 kb on + strandat 320.715 kb on - strandat 320.715 kb on - strandat 320.783 kb on - strandat 320.786 kb on + strandat 320.787 kb on - strandat 320.787 kb on - strandat 320.787 kb on - strandat 320.827 kb on - strandat 320.827 kb on - strandat 321.472 kb on - strandat 321.472 kb on - strandat 321.472 kb on - strandat 321.472 kb on - strandat 321.472 kb on - strandat 321.510 kb on + strandat 321.510 kb on + strandat 321.511 kb on - strandat 321.511 kb on - strandat 321.511 kb on - strandat 321.511 kb on - strandat 321.566 kb on + strandat 321.566 kb on + strandat 321.567 kb on - strandat 321.584 kb on + strandat 321.584 kb on + strandat 321.585 kb on - strandat 321.634 kb on + strandat 321.634 kb on + strandat 321.635 kb on - strandat 321.697 kb on - strand, within EX31_RS18705at 321.737 kb on + strand, within EX31_RS18705at 321.737 kb on + strand, within EX31_RS18705at 321.738 kb on - strand, within EX31_RS18705at 321.739 kb on + strand, within EX31_RS18705at 321.739 kb on + strand, within EX31_RS18705at 321.739 kb on + strand, within EX31_RS18705at 321.739 kb on + strand, within EX31_RS18705at 321.739 kb on + strand, within EX31_RS18705at 321.740 kb on - strand, within EX31_RS18705at 321.740 kb on - strand, within EX31_RS18705at 321.740 kb on - strand, within EX31_RS18705at 321.740 kb on - strand, within EX31_RS18705at 321.740 kb on - strand, within EX31_RS18705at 321.740 kb on - strand, within EX31_RS18705at 321.740 kb on - strand, within EX31_RS18705at 321.740 kb on - strand, within EX31_RS18705at 321.740 kb on - strand, within EX31_RS18705at 321.740 kb on - strand, within EX31_RS18705at 321.772 kb on + strand, within EX31_RS18705at 321.772 kb on + strand, within EX31_RS18705at 321.777 kb on + strand, within EX31_RS18705at 321.777 kb on + strand, within EX31_RS18705at 321.778 kb on - strand, within EX31_RS18705at 321.778 kb on - strand, within EX31_RS18705at 321.778 kb on - strand, within EX31_RS18705at 321.832 kb on - strand, within EX31_RS18705at 321.891 kb on + strand, within EX31_RS18705at 321.891 kb on + strand, within EX31_RS18705at 321.891 kb on + strand, within EX31_RS18705at 322.038 kb on + strand, within EX31_RS18705at 322.059 kb on - strand, within EX31_RS18705at 322.059 kb on - strand, within EX31_RS18705at 322.059 kb on - strand, within EX31_RS18705at 322.059 kb on - strand, within EX31_RS18705at 322.059 kb on - strand, within EX31_RS18705at 322.060 kb on + strand, within EX31_RS18705at 322.060 kb on + strand, within EX31_RS18705at 322.061 kb on - strand, within EX31_RS18705at 322.061 kb on - strand, within EX31_RS18705at 322.061 kb on - strand, within EX31_RS18705at 322.061 kb on - strand, within EX31_RS18705at 322.061 kb on - strand, within EX31_RS18705at 322.061 kb on - strand, within EX31_RS18705at 322.061 kb on - strand, within EX31_RS18705at 322.081 kb on + strand, within EX31_RS18705at 322.081 kb on + strand, within EX31_RS18705at 322.082 kb on - strand, within EX31_RS18705at 322.082 kb on - strand, within EX31_RS18705at 322.082 kb on - strand, within EX31_RS18705at 322.082 kb on - strand, within EX31_RS18705at 322.181 kb on + strand, within EX31_RS18705at 322.182 kb on - strand, within EX31_RS18705at 322.182 kb on - strand, within EX31_RS18705at 322.182 kb on - strand, within EX31_RS18705at 322.182 kb on - strand, within EX31_RS18705at 322.182 kb on - strand, within EX31_RS18705at 322.182 kb on - strand, within EX31_RS18705at 322.214 kb on - strand, within EX31_RS18705at 322.214 kb on - strand, within EX31_RS18705at 322.337 kb on - strand, within EX31_RS18705at 322.418 kb on + strand, within EX31_RS18705at 322.418 kb on + strand, within EX31_RS18705at 322.418 kb on + strand, within EX31_RS18705at 322.418 kb on + strand, within EX31_RS18705at 322.419 kb on - strand, within EX31_RS18705at 322.419 kb on - strand, within EX31_RS18705at 322.419 kb on - strand, within EX31_RS18705at 322.419 kb on - strand, within EX31_RS18705

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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319,977 - EX31_RS18695 0.45 +1.0
319,977 - EX31_RS18695 0.45 -0.0
320,005 + EX31_RS18695 0.48 -1.7
320,151 - EX31_RS18695 0.60 -1.1
320,151 - EX31_RS18695 0.60 +0.2
320,154 - EX31_RS18695 0.61 +1.2
320,154 - EX31_RS18695 0.61 -0.6
320,288 + EX31_RS18695 0.72 +0.2
320,289 - EX31_RS18695 0.72 +1.4
320,332 - EX31_RS18695 0.76 +0.9
320,335 - EX31_RS18695 0.76 +1.3
320,382 + EX31_RS18695 0.80 +0.3
320,597 + -0.4
320,598 - +0.6
320,639 + -0.6
320,639 + +0.0
320,639 + +0.6
320,639 + +0.2
320,639 + +0.3
320,643 + -1.5
320,643 + +0.4
320,683 + -0.4
320,683 + -2.0
320,684 - +0.6
320,684 - +0.6
320,714 + -0.4
320,715 - +0.6
320,715 - +0.4
320,783 - +0.1
320,786 + -0.2
320,787 - -0.4
320,787 - +1.8
320,787 - +0.2
320,827 - -1.3
320,827 - -0.1
321,472 - +0.6
321,472 - -1.1
321,472 - +0.1
321,472 - +0.4
321,472 - +0.2
321,510 + +1.0
321,510 + -1.7
321,511 - +0.0
321,511 - -0.9
321,511 - -0.6
321,511 - +0.8
321,566 + +0.6
321,566 + +0.2
321,567 - +0.3
321,584 + -0.2
321,584 + +2.0
321,585 - +0.6
321,634 + -0.1
321,634 + +2.4
321,635 - -1.0
321,697 - EX31_RS18705 0.11 -0.9
321,737 + EX31_RS18705 0.14 +1.6
321,737 + EX31_RS18705 0.14 -0.2
321,738 - EX31_RS18705 0.14 +0.6
321,739 + EX31_RS18705 0.14 +1.0
321,739 + EX31_RS18705 0.14 +0.2
321,739 + EX31_RS18705 0.14 -0.4
321,739 + EX31_RS18705 0.14 +0.6
321,739 + EX31_RS18705 0.14 +1.0
321,740 - EX31_RS18705 0.15 +1.0
321,740 - EX31_RS18705 0.15 -1.1
321,740 - EX31_RS18705 0.15 +1.4
321,740 - EX31_RS18705 0.15 +1.0
321,740 - EX31_RS18705 0.15 +1.6
321,740 - EX31_RS18705 0.15 -1.0
321,740 - EX31_RS18705 0.15 -0.8
321,740 - EX31_RS18705 0.15 +1.9
321,740 - EX31_RS18705 0.15 +0.0
321,740 - EX31_RS18705 0.15 +0.3
321,772 + EX31_RS18705 0.17 -1.5
321,772 + EX31_RS18705 0.17 -0.9
321,777 + EX31_RS18705 0.18 -2.1
321,777 + EX31_RS18705 0.18 -0.0
321,778 - EX31_RS18705 0.18 -0.4
321,778 - EX31_RS18705 0.18 +1.3
321,778 - EX31_RS18705 0.18 +0.1
321,832 - EX31_RS18705 0.23 -0.4
321,891 + EX31_RS18705 0.28 +0.4
321,891 + EX31_RS18705 0.28 -1.7
321,891 + EX31_RS18705 0.28 -0.4
322,038 + EX31_RS18705 0.41 -0.7
322,059 - EX31_RS18705 0.43 +0.4
322,059 - EX31_RS18705 0.43 +0.9
322,059 - EX31_RS18705 0.43 +0.1
322,059 - EX31_RS18705 0.43 +2.4
322,059 - EX31_RS18705 0.43 +1.1
322,060 + EX31_RS18705 0.43 -0.0
322,060 + EX31_RS18705 0.43 -0.1
322,061 - EX31_RS18705 0.43 +1.5
322,061 - EX31_RS18705 0.43 -0.4
322,061 - EX31_RS18705 0.43 +2.2
322,061 - EX31_RS18705 0.43 -0.5
322,061 - EX31_RS18705 0.43 +0.4
322,061 - EX31_RS18705 0.43 -1.0
322,061 - EX31_RS18705 0.43 +0.0
322,081 + EX31_RS18705 0.45 -0.4
322,081 + EX31_RS18705 0.45 +0.6
322,082 - EX31_RS18705 0.45 +0.6
322,082 - EX31_RS18705 0.45 +0.6
322,082 - EX31_RS18705 0.45 +0.9
322,082 - EX31_RS18705 0.45 -0.0
322,181 + EX31_RS18705 0.54 +0.0
322,182 - EX31_RS18705 0.54 +1.7
322,182 - EX31_RS18705 0.54 +0.6
322,182 - EX31_RS18705 0.54 +1.0
322,182 - EX31_RS18705 0.54 -0.3
322,182 - EX31_RS18705 0.54 -1.4
322,182 - EX31_RS18705 0.54 -0.4
322,214 - EX31_RS18705 0.57 +0.5
322,214 - EX31_RS18705 0.57 +0.9
322,337 - EX31_RS18705 0.67 -1.4
322,418 + EX31_RS18705 0.75 +0.6
322,418 + EX31_RS18705 0.75 +0.6
322,418 + EX31_RS18705 0.75 +1.4
322,418 + EX31_RS18705 0.75 +1.4
322,419 - EX31_RS18705 0.75 -0.3
322,419 - EX31_RS18705 0.75 -0.4
322,419 - EX31_RS18705 0.75 +0.2
322,419 - EX31_RS18705 0.75 -0.4

Or see this region's nucleotide sequence