Strain Fitness in Rahnella sp. WP5 around EX31_RS18180

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18175 and EX31_RS18180 overlap by 4 nucleotidesEX31_RS18180 and EX31_RS18185 are separated by 155 nucleotidesEX31_RS18185 and EX31_RS18190 are separated by 1 nucleotides EX31_RS18175: EX31_RS18175 - chromosome partition protein MukF, at 204,274 to 205,596 _RS18175 EX31_RS18180: EX31_RS18180 - tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM, at 205,593 to 206,378 _RS18180 EX31_RS18185: EX31_RS18185 - envelope biogenesis factor ElyC, at 206,534 to 207,313 _RS18185 EX31_RS18190: EX31_RS18190 - YcbJ family phosphotransferase, at 207,315 to 208,208 _RS18190 Position (kb) 205 206 207Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 205.640 kb on - strandat 205.640 kb on - strandat 205.640 kb on - strandat 205.640 kb on - strandat 205.640 kb on - strandat 205.640 kb on - strandat 205.640 kb on - strandat 205.640 kb on - strandat 205.640 kb on - strandat 205.640 kb on - strandat 205.640 kb on - strandat 205.653 kb on - strandat 205.653 kb on - strandat 205.716 kb on - strand, within EX31_RS18180at 205.716 kb on - strand, within EX31_RS18180at 205.716 kb on - strand, within EX31_RS18180at 205.716 kb on - strand, within EX31_RS18180at 205.739 kb on - strand, within EX31_RS18180at 205.739 kb on - strand, within EX31_RS18180at 205.931 kb on - strand, within EX31_RS18180at 205.931 kb on - strand, within EX31_RS18180at 205.931 kb on - strand, within EX31_RS18180at 206.032 kb on - strand, within EX31_RS18180at 206.032 kb on - strand, within EX31_RS18180at 206.086 kb on - strand, within EX31_RS18180at 206.178 kb on - strand, within EX31_RS18180at 206.178 kb on - strand, within EX31_RS18180at 206.178 kb on - strand, within EX31_RS18180at 206.178 kb on - strand, within EX31_RS18180at 206.178 kb on - strand, within EX31_RS18180at 206.178 kb on - strand, within EX31_RS18180at 206.178 kb on - strand, within EX31_RS18180at 206.178 kb on - strand, within EX31_RS18180at 206.178 kb on - strand, within EX31_RS18180at 206.178 kb on - strand, within EX31_RS18180at 206.178 kb on - strand, within EX31_RS18180at 206.178 kb on - strand, within EX31_RS18180at 206.178 kb on - strand, within EX31_RS18180at 206.178 kb on - strand, within EX31_RS18180at 206.178 kb on - strand, within EX31_RS18180at 206.178 kb on - strand, within EX31_RS18180at 206.185 kb on - strand, within EX31_RS18180at 206.185 kb on - strand, within EX31_RS18180at 206.266 kb on - strand, within EX31_RS18180at 206.269 kb on - strand, within EX31_RS18180at 206.326 kb on + strandat 206.327 kb on - strandat 206.331 kb on - strandat 206.445 kb on + strandat 206.470 kb on + strandat 206.470 kb on + strandat 206.470 kb on + strandat 206.470 kb on + strandat 206.470 kb on + strandat 206.471 kb on - strandat 206.471 kb on - strandat 206.471 kb on - strandat 206.471 kb on - strandat 206.538 kb on + strandat 206.538 kb on + strandat 206.538 kb on + strandat 206.539 kb on - strandat 206.539 kb on - strandat 206.542 kb on + strandat 206.543 kb on - strandat 206.571 kb on + strandat 206.572 kb on - strandat 206.574 kb on + strandat 206.575 kb on - strandat 206.750 kb on + strand, within EX31_RS18185at 206.750 kb on + strand, within EX31_RS18185at 206.751 kb on - strand, within EX31_RS18185at 206.780 kb on + strand, within EX31_RS18185at 206.780 kb on + strand, within EX31_RS18185at 206.780 kb on + strand, within EX31_RS18185at 206.780 kb on + strand, within EX31_RS18185at 206.780 kb on + strand, within EX31_RS18185at 206.780 kb on + strand, within EX31_RS18185at 206.780 kb on + strand, within EX31_RS18185at 206.780 kb on + strand, within EX31_RS18185at 206.780 kb on + strand, within EX31_RS18185at 206.780 kb on + strand, within EX31_RS18185at 206.780 kb on + strand, within EX31_RS18185at 206.781 kb on - strand, within EX31_RS18185at 206.781 kb on - strand, within EX31_RS18185at 206.781 kb on - strand, within EX31_RS18185at 206.781 kb on - strand, within EX31_RS18185at 206.804 kb on + strand, within EX31_RS18185at 206.806 kb on + strand, within EX31_RS18185at 206.806 kb on + strand, within EX31_RS18185at 206.806 kb on + strand, within EX31_RS18185at 206.806 kb on + strand, within EX31_RS18185at 206.806 kb on + strand, within EX31_RS18185at 206.806 kb on + strand, within EX31_RS18185at 206.806 kb on + strand, within EX31_RS18185at 206.806 kb on + strand, within EX31_RS18185at 206.806 kb on + strand, within EX31_RS18185at 206.806 kb on + strand, within EX31_RS18185at 206.807 kb on - strand, within EX31_RS18185at 206.807 kb on - strand, within EX31_RS18185at 206.807 kb on - strand, within EX31_RS18185at 206.807 kb on - strand, within EX31_RS18185at 206.807 kb on - strand, within EX31_RS18185at 206.807 kb on - strand, within EX31_RS18185at 206.807 kb on - strand, within EX31_RS18185at 206.810 kb on + strand, within EX31_RS18185at 206.810 kb on + strand, within EX31_RS18185at 206.810 kb on + strand, within EX31_RS18185at 206.810 kb on + strand, within EX31_RS18185at 206.810 kb on + strand, within EX31_RS18185at 206.810 kb on + strand, within EX31_RS18185at 206.810 kb on + strand, within EX31_RS18185at 206.810 kb on + strand, within EX31_RS18185at 206.810 kb on + strand, within EX31_RS18185at 206.811 kb on - strand, within EX31_RS18185at 206.811 kb on - strand, within EX31_RS18185at 206.811 kb on - strand, within EX31_RS18185at 206.811 kb on - strand, within EX31_RS18185at 206.811 kb on - strand, within EX31_RS18185at 206.837 kb on - strand, within EX31_RS18185at 206.848 kb on + strand, within EX31_RS18185at 206.886 kb on - strand, within EX31_RS18185at 206.938 kb on + strand, within EX31_RS18185at 206.939 kb on - strand, within EX31_RS18185at 206.985 kb on + strand, within EX31_RS18185at 207.004 kb on + strand, within EX31_RS18185at 207.007 kb on + strand, within EX31_RS18185at 207.007 kb on + strand, within EX31_RS18185at 207.007 kb on + strand, within EX31_RS18185at 207.008 kb on - strand, within EX31_RS18185at 207.008 kb on - strand, within EX31_RS18185at 207.151 kb on + strand, within EX31_RS18185at 207.180 kb on + strand, within EX31_RS18185at 207.254 kb on + strandat 207.255 kb on - strandat 207.311 kb on + strandat 207.311 kb on + strandat 207.320 kb on + strandat 207.321 kb on - strandat 207.374 kb on + strandat 207.374 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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205,640 - -1.7
205,640 - -1.7
205,640 - +1.2
205,640 - -0.2
205,640 - +0.5
205,640 - +1.7
205,640 - +0.0
205,640 - +0.6
205,640 - +0.8
205,640 - -0.2
205,640 - +1.0
205,653 - -0.2
205,653 - +1.6
205,716 - EX31_RS18180 0.16 -1.0
205,716 - EX31_RS18180 0.16 +0.3
205,716 - EX31_RS18180 0.16 +0.1
205,716 - EX31_RS18180 0.16 -0.2
205,739 - EX31_RS18180 0.19 +0.8
205,739 - EX31_RS18180 0.19 -1.0
205,931 - EX31_RS18180 0.43 +0.2
205,931 - EX31_RS18180 0.43 -1.4
205,931 - EX31_RS18180 0.43 +0.9
206,032 - EX31_RS18180 0.56 -1.4
206,032 - EX31_RS18180 0.56 -0.2
206,086 - EX31_RS18180 0.63 -0.2
206,178 - EX31_RS18180 0.74 -1.1
206,178 - EX31_RS18180 0.74 +0.2
206,178 - EX31_RS18180 0.74 -0.4
206,178 - EX31_RS18180 0.74 +3.6
206,178 - EX31_RS18180 0.74 -0.3
206,178 - EX31_RS18180 0.74 -0.4
206,178 - EX31_RS18180 0.74 -1.4
206,178 - EX31_RS18180 0.74 +1.6
206,178 - EX31_RS18180 0.74 +1.6
206,178 - EX31_RS18180 0.74 -1.8
206,178 - EX31_RS18180 0.74 +0.3
206,178 - EX31_RS18180 0.74 +0.4
206,178 - EX31_RS18180 0.74 -0.4
206,178 - EX31_RS18180 0.74 +2.0
206,178 - EX31_RS18180 0.74 +0.3
206,178 - EX31_RS18180 0.74 +0.1
206,185 - EX31_RS18180 0.75 -0.3
206,185 - EX31_RS18180 0.75 +0.1
206,266 - EX31_RS18180 0.86 -0.6
206,269 - EX31_RS18180 0.86 +0.3
206,326 + +2.4
206,327 - +0.2
206,331 - -0.8
206,445 + +0.3
206,470 + +0.6
206,470 + +3.0
206,470 + -0.5
206,470 + +0.0
206,470 + -0.4
206,471 - -1.8
206,471 - +0.3
206,471 - -0.4
206,471 - -1.2
206,538 + -2.2
206,538 + -0.4
206,538 + +0.2
206,539 - +0.4
206,539 - -1.0
206,542 + -2.8
206,543 - -0.2
206,571 + +1.2
206,572 - +0.3
206,574 + +1.1
206,575 - -1.4
206,750 + EX31_RS18185 0.28 +0.4
206,750 + EX31_RS18185 0.28 -0.1
206,751 - EX31_RS18185 0.28 -0.1
206,780 + EX31_RS18185 0.32 +0.7
206,780 + EX31_RS18185 0.32 +0.6
206,780 + EX31_RS18185 0.32 +1.0
206,780 + EX31_RS18185 0.32 +0.3
206,780 + EX31_RS18185 0.32 +0.2
206,780 + EX31_RS18185 0.32 +0.9
206,780 + EX31_RS18185 0.32 +0.2
206,780 + EX31_RS18185 0.32 +0.9
206,780 + EX31_RS18185 0.32 +0.3
206,780 + EX31_RS18185 0.32 +0.8
206,780 + EX31_RS18185 0.32 +0.4
206,781 - EX31_RS18185 0.32 -1.2
206,781 - EX31_RS18185 0.32 +0.6
206,781 - EX31_RS18185 0.32 +2.9
206,781 - EX31_RS18185 0.32 -1.0
206,804 + EX31_RS18185 0.35 +0.6
206,806 + EX31_RS18185 0.35 +0.6
206,806 + EX31_RS18185 0.35 -0.0
206,806 + EX31_RS18185 0.35 -0.3
206,806 + EX31_RS18185 0.35 +0.3
206,806 + EX31_RS18185 0.35 -0.5
206,806 + EX31_RS18185 0.35 +1.2
206,806 + EX31_RS18185 0.35 -1.2
206,806 + EX31_RS18185 0.35 +0.9
206,806 + EX31_RS18185 0.35 -0.6
206,806 + EX31_RS18185 0.35 +0.2
206,807 - EX31_RS18185 0.35 +0.6
206,807 - EX31_RS18185 0.35 -2.6
206,807 - EX31_RS18185 0.35 -1.0
206,807 - EX31_RS18185 0.35 -1.3
206,807 - EX31_RS18185 0.35 -0.5
206,807 - EX31_RS18185 0.35 +2.2
206,807 - EX31_RS18185 0.35 +0.7
206,810 + EX31_RS18185 0.35 +0.3
206,810 + EX31_RS18185 0.35 -0.4
206,810 + EX31_RS18185 0.35 -0.1
206,810 + EX31_RS18185 0.35 -0.6
206,810 + EX31_RS18185 0.35 -2.1
206,810 + EX31_RS18185 0.35 -0.2
206,810 + EX31_RS18185 0.35 -1.8
206,810 + EX31_RS18185 0.35 -0.0
206,810 + EX31_RS18185 0.35 -0.8
206,811 - EX31_RS18185 0.36 -0.3
206,811 - EX31_RS18185 0.36 +0.2
206,811 - EX31_RS18185 0.36 -0.4
206,811 - EX31_RS18185 0.36 -0.7
206,811 - EX31_RS18185 0.36 +1.1
206,837 - EX31_RS18185 0.39 -0.2
206,848 + EX31_RS18185 0.40 +1.3
206,886 - EX31_RS18185 0.45 +0.1
206,938 + EX31_RS18185 0.52 -1.4
206,939 - EX31_RS18185 0.52 -0.4
206,985 + EX31_RS18185 0.58 -0.4
207,004 + EX31_RS18185 0.60 +1.7
207,007 + EX31_RS18185 0.61 -0.4
207,007 + EX31_RS18185 0.61 -1.0
207,007 + EX31_RS18185 0.61 +2.6
207,008 - EX31_RS18185 0.61 -1.2
207,008 - EX31_RS18185 0.61 +0.2
207,151 + EX31_RS18185 0.79 -1.0
207,180 + EX31_RS18185 0.83 -1.8
207,254 + +0.6
207,255 - +1.2
207,311 + -2.2
207,311 + -0.2
207,320 + -0.6
207,321 - +0.6
207,374 + +1.1
207,374 + +1.2

Or see this region's nucleotide sequence