Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13180 and EX31_RS13185 overlap by 10 nucleotides EX31_RS13185 and EX31_RS13190 are separated by 281 nucleotides EX31_RS13190 and EX31_RS13195 are separated by 6 nucleotides
EX31_RS13180: EX31_RS13180 - prepilin peptidase-dependent protein, at 61,346 to 61,933
_RS13180
EX31_RS13185: EX31_RS13185 - prepilin peptidase-dependent protein, at 61,924 to 62,385
_RS13185
EX31_RS13190: EX31_RS13190 - thymidylate synthase, at 62,667 to 63,461
_RS13190
EX31_RS13195: EX31_RS13195 - prolipoprotein diacylglyceryl transferase, at 63,468 to 64,337
_RS13195
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1
2 at 61.741 kb on + strand, within EX31_RS13180 at 61.741 kb on + strand, within EX31_RS13180 at 61.762 kb on + strand, within EX31_RS13180 at 61.762 kb on + strand, within EX31_RS13180 at 61.934 kb on - strand at 61.934 kb on - strand at 61.948 kb on + strand at 61.948 kb on + strand at 61.966 kb on - strand at 61.971 kb on + strand, within EX31_RS13185 at 61.971 kb on + strand, within EX31_RS13185 at 61.971 kb on + strand, within EX31_RS13185 at 61.971 kb on + strand, within EX31_RS13185 at 61.971 kb on + strand, within EX31_RS13185 at 61.971 kb on + strand, within EX31_RS13185 at 61.971 kb on + strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.972 kb on - strand, within EX31_RS13185 at 61.976 kb on - strand, within EX31_RS13185 at 61.976 kb on - strand, within EX31_RS13185 at 62.011 kb on - strand, within EX31_RS13185 at 62.011 kb on - strand, within EX31_RS13185 at 62.027 kb on - strand, within EX31_RS13185 at 62.034 kb on + strand, within EX31_RS13185 at 62.034 kb on + strand, within EX31_RS13185 at 62.034 kb on + strand, within EX31_RS13185 at 62.035 kb on - strand, within EX31_RS13185 at 62.035 kb on - strand, within EX31_RS13185 at 62.035 kb on - strand, within EX31_RS13185 at 62.035 kb on - strand, within EX31_RS13185 at 62.035 kb on - strand, within EX31_RS13185 at 62.035 kb on - strand, within EX31_RS13185 at 62.035 kb on - strand, within EX31_RS13185 at 62.035 kb on - strand, within EX31_RS13185 at 62.056 kb on - strand, within EX31_RS13185 at 62.099 kb on - strand, within EX31_RS13185 at 62.128 kb on + strand, within EX31_RS13185 at 62.145 kb on + strand, within EX31_RS13185 at 62.146 kb on - strand, within EX31_RS13185 at 62.146 kb on - strand, within EX31_RS13185 at 62.187 kb on + strand, within EX31_RS13185 at 62.188 kb on - strand, within EX31_RS13185 at 62.226 kb on - strand, within EX31_RS13185 at 62.230 kb on - strand, within EX31_RS13185 at 62.258 kb on + strand, within EX31_RS13185 at 62.259 kb on - strand, within EX31_RS13185 at 62.259 kb on - strand, within EX31_RS13185 at 62.374 kb on + strand at 62.430 kb on - strand at 62.437 kb on + strand at 62.489 kb on + strand at 62.489 kb on + strand at 62.489 kb on + strand at 62.489 kb on + strand at 62.489 kb on + strand at 62.518 kb on + strand at 62.518 kb on + strand at 62.519 kb on - strand at 62.543 kb on + strand at 62.544 kb on - strand at 62.546 kb on + strand at 62.546 kb on + strand at 62.546 kb on + strand at 62.556 kb on + strand at 62.557 kb on - strand at 62.557 kb on - strand at 62.557 kb on - strand at 62.557 kb on - strand at 62.579 kb on + strand at 62.579 kb on + strand at 62.616 kb on + strand at 62.617 kb on - strand at 64.357 kb on - strand at 64.395 kb on - strand at 64.395 kb on - strand at 64.395 kb on - strand at 64.395 kb on - strand at 64.395 kb on - strand at 64.395 kb on - strand at 64.395 kb on - strand at 64.398 kb on - strand at 64.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 61,741 + EX31_RS13180 0.67 -0.1 61,741 + EX31_RS13180 0.67 +0.9 61,762 + EX31_RS13180 0.71 -1.3 61,762 + EX31_RS13180 0.71 -0.4 61,934 - -0.4 61,934 - -0.2 61,948 + -1.0 61,948 + -0.5 61,966 - +0.2 61,971 + EX31_RS13185 0.10 +1.1 61,971 + EX31_RS13185 0.10 +0.4 61,971 + EX31_RS13185 0.10 +0.9 61,971 + EX31_RS13185 0.10 -0.9 61,971 + EX31_RS13185 0.10 -0.6 61,971 + EX31_RS13185 0.10 -0.6 61,971 + EX31_RS13185 0.10 -0.6 61,972 - EX31_RS13185 0.10 +0.4 61,972 - EX31_RS13185 0.10 +1.0 61,972 - EX31_RS13185 0.10 -0.1 61,972 - EX31_RS13185 0.10 -0.2 61,972 - EX31_RS13185 0.10 +0.5 61,972 - EX31_RS13185 0.10 -0.3 61,972 - EX31_RS13185 0.10 +0.6 61,972 - EX31_RS13185 0.10 +0.5 61,972 - EX31_RS13185 0.10 +0.4 61,972 - EX31_RS13185 0.10 -0.6 61,972 - EX31_RS13185 0.10 -0.1 61,972 - EX31_RS13185 0.10 +1.4 61,972 - EX31_RS13185 0.10 -1.1 61,972 - EX31_RS13185 0.10 -1.0 61,972 - EX31_RS13185 0.10 +0.7 61,972 - EX31_RS13185 0.10 -0.6 61,972 - EX31_RS13185 0.10 +0.5 61,972 - EX31_RS13185 0.10 +0.6 61,972 - EX31_RS13185 0.10 -1.0 61,972 - EX31_RS13185 0.10 -0.2 61,972 - EX31_RS13185 0.10 -0.2 61,972 - EX31_RS13185 0.10 -2.0 61,972 - EX31_RS13185 0.10 -1.9 61,976 - EX31_RS13185 0.11 -0.6 61,976 - EX31_RS13185 0.11 +0.8 62,011 - EX31_RS13185 0.19 +0.2 62,011 - EX31_RS13185 0.19 -0.4 62,027 - EX31_RS13185 0.22 +0.3 62,034 + EX31_RS13185 0.24 +0.3 62,034 + EX31_RS13185 0.24 +0.4 62,034 + EX31_RS13185 0.24 +0.1 62,035 - EX31_RS13185 0.24 +0.1 62,035 - EX31_RS13185 0.24 +0.3 62,035 - EX31_RS13185 0.24 -1.6 62,035 - EX31_RS13185 0.24 -0.0 62,035 - EX31_RS13185 0.24 +0.3 62,035 - EX31_RS13185 0.24 +0.1 62,035 - EX31_RS13185 0.24 -1.6 62,035 - EX31_RS13185 0.24 +0.8 62,056 - EX31_RS13185 0.29 -0.8 62,099 - EX31_RS13185 0.38 +1.1 62,128 + EX31_RS13185 0.44 -1.0 62,145 + EX31_RS13185 0.48 +0.5 62,146 - EX31_RS13185 0.48 +0.3 62,146 - EX31_RS13185 0.48 +0.9 62,187 + EX31_RS13185 0.57 -0.1 62,188 - EX31_RS13185 0.57 +1.4 62,226 - EX31_RS13185 0.65 -0.5 62,230 - EX31_RS13185 0.66 +1.5 62,258 + EX31_RS13185 0.72 +0.3 62,259 - EX31_RS13185 0.73 +0.3 62,259 - EX31_RS13185 0.73 +0.7 62,374 + +0.3 62,430 - -0.1 62,437 + -0.9 62,489 + -1.2 62,489 + +0.8 62,489 + -0.0 62,489 + +0.6 62,489 + +0.6 62,518 + -0.0 62,518 + -0.7 62,519 - +0.1 62,543 + -1.2 62,544 - -0.4 62,546 + +0.8 62,546 + +1.7 62,546 + +0.6 62,556 + +0.7 62,557 - +1.1 62,557 - -0.3 62,557 - -1.1 62,557 - +2.0 62,579 + -0.0 62,579 + -0.8 62,616 + -0.2 62,617 - +0.3 64,357 - -0.0 64,395 - -0.8 64,395 - +0.7 64,395 - -0.2 64,395 - -0.1 64,395 - -0.1 64,395 - -1.0 64,395 - +0.6 64,398 - -0.3 64,398 - +0.5
Or see this region's nucleotide sequence