Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS12180 and EX31_RS12185 are separated by 389 nucleotides EX31_RS12185 and EX31_RS12190 are separated by 160 nucleotides
EX31_RS12180: EX31_RS12180 - tRNA dihydrouridine synthase DusB, at 102,773 to 103,738
_RS12180
EX31_RS12185: EX31_RS12185 - carbonic anhydrase family protein, at 104,128 to 104,865
_RS12185
EX31_RS12190: EX31_RS12190 - 50S ribosomal protein L11 methyltransferase, at 105,026 to 105,910
_RS12190
Position (kb) 104
105 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 103.131 kb on - strand, within EX31_RS12180 at 103.131 kb on - strand, within EX31_RS12180 at 103.131 kb on - strand, within EX31_RS12180 at 103.131 kb on - strand, within EX31_RS12180 at 103.131 kb on - strand, within EX31_RS12180 at 103.131 kb on - strand, within EX31_RS12180 at 103.131 kb on - strand, within EX31_RS12180 at 103.131 kb on - strand, within EX31_RS12180 at 103.131 kb on - strand, within EX31_RS12180 at 103.172 kb on - strand, within EX31_RS12180 at 103.172 kb on - strand, within EX31_RS12180 at 103.172 kb on - strand, within EX31_RS12180 at 103.172 kb on - strand, within EX31_RS12180 at 103.172 kb on - strand, within EX31_RS12180 at 103.192 kb on - strand, within EX31_RS12180 at 103.192 kb on - strand, within EX31_RS12180 at 103.238 kb on - strand, within EX31_RS12180 at 103.292 kb on - strand, within EX31_RS12180 at 103.292 kb on - strand, within EX31_RS12180 at 103.292 kb on - strand, within EX31_RS12180 at 103.292 kb on - strand, within EX31_RS12180 at 103.292 kb on - strand, within EX31_RS12180 at 103.344 kb on - strand, within EX31_RS12180 at 103.344 kb on - strand, within EX31_RS12180 at 103.344 kb on - strand, within EX31_RS12180 at 103.352 kb on - strand, within EX31_RS12180 at 103.352 kb on - strand, within EX31_RS12180 at 103.352 kb on - strand, within EX31_RS12180 at 103.559 kb on - strand, within EX31_RS12180 at 103.559 kb on - strand, within EX31_RS12180 at 103.559 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.563 kb on - strand, within EX31_RS12180 at 103.583 kb on - strand, within EX31_RS12180 at 103.583 kb on - strand, within EX31_RS12180 at 103.626 kb on - strand, within EX31_RS12180 at 103.656 kb on - strand at 103.656 kb on - strand at 103.656 kb on - strand at 103.656 kb on - strand at 103.656 kb on - strand at 103.656 kb on - strand at 103.656 kb on - strand at 103.714 kb on + strand at 103.744 kb on - strand at 103.744 kb on - strand at 103.744 kb on - strand at 103.756 kb on - strand at 103.756 kb on - strand at 103.756 kb on - strand at 103.778 kb on - strand at 103.778 kb on - strand at 103.778 kb on - strand at 103.778 kb on - strand at 103.779 kb on + strand at 103.780 kb on - strand at 103.780 kb on - strand at 103.887 kb on + strand at 103.897 kb on + strand at 103.898 kb on - strand at 103.937 kb on - strand at 103.939 kb on + strand at 103.939 kb on + strand at 103.939 kb on + strand at 103.939 kb on + strand at 103.939 kb on + strand at 103.940 kb on - strand at 103.961 kb on - strand at 103.961 kb on - strand at 103.962 kb on + strand at 103.963 kb on - strand at 103.963 kb on - strand at 103.963 kb on - strand at 103.995 kb on + strand at 103.995 kb on + strand at 103.996 kb on - strand at 103.996 kb on - strand at 104.111 kb on + strand at 104.111 kb on + strand at 104.112 kb on - strand at 104.112 kb on - strand at 104.129 kb on + strand at 104.130 kb on - strand at 104.130 kb on - strand at 104.164 kb on + strand at 104.268 kb on + strand, within EX31_RS12185 at 104.268 kb on + strand, within EX31_RS12185 at 104.268 kb on + strand, within EX31_RS12185 at 104.268 kb on + strand, within EX31_RS12185 at 104.269 kb on - strand, within EX31_RS12185 at 104.269 kb on - strand, within EX31_RS12185 at 104.269 kb on - strand, within EX31_RS12185 at 104.280 kb on + strand, within EX31_RS12185 at 104.281 kb on - strand, within EX31_RS12185 at 104.472 kb on + strand, within EX31_RS12185 at 104.472 kb on + strand, within EX31_RS12185 at 104.472 kb on + strand, within EX31_RS12185 at 104.473 kb on - strand, within EX31_RS12185 at 104.473 kb on - strand, within EX31_RS12185 at 104.473 kb on - strand, within EX31_RS12185 at 104.506 kb on - strand, within EX31_RS12185 at 104.518 kb on - strand, within EX31_RS12185 at 104.622 kb on + strand, within EX31_RS12185 at 104.625 kb on + strand, within EX31_RS12185 at 104.625 kb on + strand, within EX31_RS12185 at 104.625 kb on + strand, within EX31_RS12185 at 104.625 kb on + strand, within EX31_RS12185 at 104.626 kb on - strand, within EX31_RS12185 at 104.626 kb on - strand, within EX31_RS12185 at 104.651 kb on + strand, within EX31_RS12185 at 104.651 kb on + strand, within EX31_RS12185 at 104.786 kb on + strand, within EX31_RS12185 at 104.786 kb on + strand, within EX31_RS12185 at 104.786 kb on + strand, within EX31_RS12185 at 104.786 kb on + strand, within EX31_RS12185 at 104.786 kb on + strand, within EX31_RS12185 at 104.786 kb on + strand, within EX31_RS12185 at 104.786 kb on + strand, within EX31_RS12185 at 104.786 kb on + strand, within EX31_RS12185 at 104.786 kb on + strand, within EX31_RS12185 at 104.787 kb on - strand, within EX31_RS12185 at 104.787 kb on - strand, within EX31_RS12185 at 104.787 kb on - strand, within EX31_RS12185 at 104.787 kb on - strand, within EX31_RS12185 at 104.787 kb on - strand, within EX31_RS12185 at 104.787 kb on - strand, within EX31_RS12185 at 104.787 kb on - strand, within EX31_RS12185 at 104.787 kb on - strand, within EX31_RS12185 at 104.787 kb on - strand, within EX31_RS12185 at 104.841 kb on + strand at 104.841 kb on + strand at 104.841 kb on + strand at 104.841 kb on + strand at 104.841 kb on + strand at 104.841 kb on + strand at 104.841 kb on + strand at 104.841 kb on + strand at 104.841 kb on + strand at 104.841 kb on + strand at 104.841 kb on + strand at 104.842 kb on - strand at 104.842 kb on - strand at 104.842 kb on - strand at 104.842 kb on - strand at 104.842 kb on - strand at 104.842 kb on - strand at 104.842 kb on - strand at 104.842 kb on - strand at 104.842 kb on - strand at 104.842 kb on - strand at 104.842 kb on - strand at 104.842 kb on - strand at 104.842 kb on - strand at 104.842 kb on - strand at 104.842 kb on - strand at 104.842 kb on - strand at 104.842 kb on - strand at 104.866 kb on + strand at 104.866 kb on + strand at 104.866 kb on + strand at 104.866 kb on + strand at 104.867 kb on - strand at 104.867 kb on - strand at 104.867 kb on - strand at 104.867 kb on - strand at 104.867 kb on - strand at 104.867 kb on - strand at 104.867 kb on - strand at 104.867 kb on - strand at 104.867 kb on - strand at 104.867 kb on - strand at 104.885 kb on + strand at 104.885 kb on + strand at 104.886 kb on - strand at 104.905 kb on + strand at 104.906 kb on - strand at 104.908 kb on + strand at 104.908 kb on + strand at 105.049 kb on + strand at 105.049 kb on + strand at 105.101 kb on - strand at 105.102 kb on + strand at 105.102 kb on + strand at 105.102 kb on + strand at 105.102 kb on + strand at 105.102 kb on + strand at 105.102 kb on + strand at 105.102 kb on + strand at 105.103 kb on - strand at 105.103 kb on - strand at 105.103 kb on - strand at 105.103 kb on - strand at 105.103 kb on - strand at 105.137 kb on + strand, within EX31_RS12190 at 105.138 kb on - strand, within EX31_RS12190 at 105.274 kb on - strand, within EX31_RS12190 at 105.274 kb on - strand, within EX31_RS12190 at 105.293 kb on + strand, within EX31_RS12190 at 105.294 kb on - strand, within EX31_RS12190 at 105.302 kb on - strand, within EX31_RS12190 at 105.302 kb on - strand, within EX31_RS12190 at 105.434 kb on - strand, within EX31_RS12190 at 105.607 kb on + strand, within EX31_RS12190 at 105.608 kb on - strand, within EX31_RS12190 at 105.695 kb on + strand, within EX31_RS12190 at 105.696 kb on - strand, within EX31_RS12190 at 105.696 kb on - strand, within EX31_RS12190 at 105.732 kb on + strand, within EX31_RS12190 at 105.732 kb on + strand, within EX31_RS12190 at 105.733 kb on - strand, within EX31_RS12190 at 105.733 kb on - strand, within EX31_RS12190 at 105.733 kb on - strand, within EX31_RS12190 at 105.733 kb on - strand, within EX31_RS12190
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 103,131 - EX31_RS12180 0.37 +0.5 103,131 - EX31_RS12180 0.37 +1.0 103,131 - EX31_RS12180 0.37 +0.7 103,131 - EX31_RS12180 0.37 +0.3 103,131 - EX31_RS12180 0.37 +0.1 103,131 - EX31_RS12180 0.37 -1.1 103,131 - EX31_RS12180 0.37 -0.2 103,131 - EX31_RS12180 0.37 +0.5 103,131 - EX31_RS12180 0.37 +0.3 103,172 - EX31_RS12180 0.41 +0.1 103,172 - EX31_RS12180 0.41 +0.4 103,172 - EX31_RS12180 0.41 -0.0 103,172 - EX31_RS12180 0.41 +0.2 103,172 - EX31_RS12180 0.41 +0.3 103,192 - EX31_RS12180 0.43 -2.4 103,192 - EX31_RS12180 0.43 +1.3 103,238 - EX31_RS12180 0.48 +0.5 103,292 - EX31_RS12180 0.54 +1.1 103,292 - EX31_RS12180 0.54 -2.7 103,292 - EX31_RS12180 0.54 -0.1 103,292 - EX31_RS12180 0.54 +0.7 103,292 - EX31_RS12180 0.54 +1.1 103,344 - EX31_RS12180 0.59 -1.7 103,344 - EX31_RS12180 0.59 -0.0 103,344 - EX31_RS12180 0.59 -0.0 103,352 - EX31_RS12180 0.60 +0.4 103,352 - EX31_RS12180 0.60 -1.2 103,352 - EX31_RS12180 0.60 -1.1 103,559 - EX31_RS12180 0.81 -0.0 103,559 - EX31_RS12180 0.81 +0.3 103,559 - EX31_RS12180 0.81 -0.3 103,563 - EX31_RS12180 0.82 -1.5 103,563 - EX31_RS12180 0.82 +0.1 103,563 - EX31_RS12180 0.82 +0.2 103,563 - EX31_RS12180 0.82 -0.2 103,563 - EX31_RS12180 0.82 +0.2 103,563 - EX31_RS12180 0.82 +0.1 103,563 - EX31_RS12180 0.82 +0.2 103,563 - EX31_RS12180 0.82 +0.6 103,563 - EX31_RS12180 0.82 +0.8 103,563 - EX31_RS12180 0.82 +2.7 103,563 - EX31_RS12180 0.82 +0.3 103,563 - EX31_RS12180 0.82 -1.7 103,563 - EX31_RS12180 0.82 +0.3 103,563 - EX31_RS12180 0.82 +0.3 103,563 - EX31_RS12180 0.82 -1.1 103,563 - EX31_RS12180 0.82 -0.2 103,563 - EX31_RS12180 0.82 -1.0 103,563 - EX31_RS12180 0.82 +1.3 103,563 - EX31_RS12180 0.82 +0.2 103,563 - EX31_RS12180 0.82 +0.5 103,563 - EX31_RS12180 0.82 +1.3 103,583 - EX31_RS12180 0.84 +1.3 103,583 - EX31_RS12180 0.84 +0.7 103,626 - EX31_RS12180 0.88 +0.8 103,656 - -0.1 103,656 - -0.5 103,656 - +0.1 103,656 - +0.3 103,656 - -0.5 103,656 - -0.8 103,656 - +0.2 103,714 + -0.5 103,744 - +0.2 103,744 - -1.1 103,744 - +1.0 103,756 - -0.1 103,756 - -0.5 103,756 - -0.3 103,778 - -0.2 103,778 - -0.6 103,778 - -0.4 103,778 - +0.5 103,779 + +0.3 103,780 - +0.2 103,780 - +1.4 103,887 + -0.2 103,897 + +0.2 103,898 - +1.7 103,937 - +0.9 103,939 + -0.8 103,939 + +0.9 103,939 + +0.1 103,939 + -0.4 103,939 + +1.0 103,940 - +3.1 103,961 - -0.3 103,961 - +0.6 103,962 + -0.5 103,963 - -0.1 103,963 - -0.2 103,963 - +0.5 103,995 + -0.5 103,995 + +0.1 103,996 - +0.7 103,996 - -1.1 104,111 + +1.1 104,111 + -0.6 104,112 - +0.4 104,112 - +0.9 104,129 + +0.4 104,130 - -0.3 104,130 - +1.2 104,164 + +0.2 104,268 + EX31_RS12185 0.19 +0.4 104,268 + EX31_RS12185 0.19 +0.1 104,268 + EX31_RS12185 0.19 +0.7 104,268 + EX31_RS12185 0.19 -2.0 104,269 - EX31_RS12185 0.19 +1.2 104,269 - EX31_RS12185 0.19 -1.2 104,269 - EX31_RS12185 0.19 +0.2 104,280 + EX31_RS12185 0.21 +1.2 104,281 - EX31_RS12185 0.21 -1.3 104,472 + EX31_RS12185 0.47 +0.6 104,472 + EX31_RS12185 0.47 +1.4 104,472 + EX31_RS12185 0.47 -0.2 104,473 - EX31_RS12185 0.47 -0.1 104,473 - EX31_RS12185 0.47 +0.1 104,473 - EX31_RS12185 0.47 +0.5 104,506 - EX31_RS12185 0.51 +0.3 104,518 - EX31_RS12185 0.53 -0.5 104,622 + EX31_RS12185 0.67 +0.6 104,625 + EX31_RS12185 0.67 +0.2 104,625 + EX31_RS12185 0.67 +0.2 104,625 + EX31_RS12185 0.67 +0.2 104,625 + EX31_RS12185 0.67 -0.9 104,626 - EX31_RS12185 0.67 +0.6 104,626 - EX31_RS12185 0.67 +0.5 104,651 + EX31_RS12185 0.71 -0.1 104,651 + EX31_RS12185 0.71 +0.0 104,786 + EX31_RS12185 0.89 -0.1 104,786 + EX31_RS12185 0.89 -0.7 104,786 + EX31_RS12185 0.89 -1.8 104,786 + EX31_RS12185 0.89 -0.0 104,786 + EX31_RS12185 0.89 +0.5 104,786 + EX31_RS12185 0.89 +0.3 104,786 + EX31_RS12185 0.89 -0.3 104,786 + EX31_RS12185 0.89 +0.9 104,786 + EX31_RS12185 0.89 -0.6 104,787 - EX31_RS12185 0.89 -0.4 104,787 - EX31_RS12185 0.89 +0.6 104,787 - EX31_RS12185 0.89 -0.5 104,787 - EX31_RS12185 0.89 -0.7 104,787 - EX31_RS12185 0.89 -0.2 104,787 - EX31_RS12185 0.89 +0.1 104,787 - EX31_RS12185 0.89 -0.4 104,787 - EX31_RS12185 0.89 +0.9 104,787 - EX31_RS12185 0.89 +0.1 104,841 + -0.1 104,841 + -0.8 104,841 + +0.2 104,841 + -1.2 104,841 + +0.5 104,841 + +0.3 104,841 + -0.8 104,841 + +1.8 104,841 + +1.2 104,841 + -0.1 104,841 + -0.5 104,842 - -0.6 104,842 - +0.1 104,842 - +0.1 104,842 - -0.3 104,842 - -0.2 104,842 - +0.3 104,842 - -1.7 104,842 - +0.7 104,842 - -0.9 104,842 - -0.7 104,842 - +0.3 104,842 - -1.4 104,842 - -0.4 104,842 - +0.5 104,842 - -2.3 104,842 - -0.5 104,842 - -0.3 104,866 + -1.9 104,866 + +1.1 104,866 + +0.2 104,866 + +0.1 104,867 - +0.0 104,867 - +0.5 104,867 - -0.5 104,867 - -0.6 104,867 - -0.9 104,867 - -0.5 104,867 - +0.5 104,867 - -0.6 104,867 - -0.3 104,867 - -0.7 104,885 + +0.1 104,885 + -0.1 104,886 - +1.7 104,905 + +2.1 104,906 - +0.1 104,908 + -0.2 104,908 + +0.1 105,049 + +1.3 105,049 + -0.5 105,101 - +0.8 105,102 + -0.1 105,102 + +0.7 105,102 + -0.5 105,102 + -0.1 105,102 + -0.2 105,102 + +1.3 105,102 + +0.1 105,103 - +0.2 105,103 - +1.6 105,103 - -0.5 105,103 - -0.1 105,103 - -0.1 105,137 + EX31_RS12190 0.13 +0.8 105,138 - EX31_RS12190 0.13 +0.2 105,274 - EX31_RS12190 0.28 +0.3 105,274 - EX31_RS12190 0.28 +1.0 105,293 + EX31_RS12190 0.30 -0.7 105,294 - EX31_RS12190 0.30 -0.5 105,302 - EX31_RS12190 0.31 +0.5 105,302 - EX31_RS12190 0.31 +0.5 105,434 - EX31_RS12190 0.46 +0.9 105,607 + EX31_RS12190 0.66 +1.1 105,608 - EX31_RS12190 0.66 +0.4 105,695 + EX31_RS12190 0.76 -0.1 105,696 - EX31_RS12190 0.76 -0.9 105,696 - EX31_RS12190 0.76 +1.0 105,732 + EX31_RS12190 0.80 +0.3 105,732 + EX31_RS12190 0.80 -1.0 105,733 - EX31_RS12190 0.80 -0.1 105,733 - EX31_RS12190 0.80 +0.5 105,733 - EX31_RS12190 0.80 +0.7 105,733 - EX31_RS12190 0.80 -0.0
Or see this region's nucleotide sequence