Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11660 and EX31_RS11665 overlap by 4 nucleotides EX31_RS11665 and EX31_RS11670 are separated by 63 nucleotides
EX31_RS11660: EX31_RS11660 - MFS transporter, at 274,269 to 275,681
_RS11660
EX31_RS11665: EX31_RS11665 - glycosyl hydrolase, at 275,678 to 278,056
_RS11665
EX31_RS11670: EX31_RS11670 - Holliday junction branch migration DNA helicase RuvB, at 278,120 to 279,127
_RS11670
Position (kb) 275
276
277
278
279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 274.815 kb on + strand, within EX31_RS11660 at 274.815 kb on + strand, within EX31_RS11660 at 274.816 kb on - strand, within EX31_RS11660 at 274.822 kb on - strand, within EX31_RS11660 at 274.894 kb on - strand, within EX31_RS11660 at 274.993 kb on + strand, within EX31_RS11660 at 274.993 kb on + strand, within EX31_RS11660 at 274.996 kb on + strand, within EX31_RS11660 at 275.031 kb on + strand, within EX31_RS11660 at 275.032 kb on - strand, within EX31_RS11660 at 275.032 kb on - strand, within EX31_RS11660 at 275.032 kb on - strand, within EX31_RS11660 at 275.139 kb on - strand, within EX31_RS11660 at 275.160 kb on + strand, within EX31_RS11660 at 275.161 kb on - strand, within EX31_RS11660 at 275.433 kb on - strand, within EX31_RS11660 at 275.433 kb on - strand, within EX31_RS11660 at 275.553 kb on + strand at 275.554 kb on - strand at 275.554 kb on - strand at 275.582 kb on + strand at 275.674 kb on + strand at 275.675 kb on - strand at 275.675 kb on - strand at 275.684 kb on + strand at 275.685 kb on - strand at 275.685 kb on - strand at 275.946 kb on + strand, within EX31_RS11665 at 275.979 kb on + strand, within EX31_RS11665 at 275.979 kb on + strand, within EX31_RS11665 at 275.980 kb on - strand, within EX31_RS11665 at 276.036 kb on + strand, within EX31_RS11665 at 276.037 kb on - strand, within EX31_RS11665 at 276.077 kb on + strand, within EX31_RS11665 at 276.078 kb on - strand, within EX31_RS11665 at 276.208 kb on + strand, within EX31_RS11665 at 276.209 kb on - strand, within EX31_RS11665 at 276.264 kb on - strand, within EX31_RS11665 at 276.317 kb on + strand, within EX31_RS11665 at 276.317 kb on + strand, within EX31_RS11665 at 276.317 kb on + strand, within EX31_RS11665 at 276.317 kb on + strand, within EX31_RS11665 at 276.317 kb on + strand, within EX31_RS11665 at 276.318 kb on - strand, within EX31_RS11665 at 276.318 kb on - strand, within EX31_RS11665 at 276.709 kb on + strand, within EX31_RS11665 at 276.783 kb on - strand, within EX31_RS11665 at 276.875 kb on - strand, within EX31_RS11665 at 277.052 kb on + strand, within EX31_RS11665 at 277.053 kb on - strand, within EX31_RS11665 at 277.075 kb on + strand, within EX31_RS11665 at 277.075 kb on + strand, within EX31_RS11665 at 277.076 kb on - strand, within EX31_RS11665 at 277.076 kb on - strand, within EX31_RS11665 at 277.123 kb on - strand, within EX31_RS11665 at 277.174 kb on + strand, within EX31_RS11665 at 277.388 kb on + strand, within EX31_RS11665 at 277.550 kb on + strand, within EX31_RS11665 at 277.550 kb on + strand, within EX31_RS11665 at 277.553 kb on + strand, within EX31_RS11665 at 277.553 kb on + strand, within EX31_RS11665 at 277.554 kb on - strand, within EX31_RS11665 at 277.554 kb on - strand, within EX31_RS11665 at 277.629 kb on + strand, within EX31_RS11665 at 277.629 kb on + strand, within EX31_RS11665 at 277.629 kb on + strand, within EX31_RS11665 at 277.659 kb on + strand, within EX31_RS11665 at 277.963 kb on + strand at 278.017 kb on + strand at 278.058 kb on - strand at 278.153 kb on - strand at 278.155 kb on - strand at 278.155 kb on - strand at 278.155 kb on - strand at 278.340 kb on + strand, within EX31_RS11670 at 278.875 kb on + strand, within EX31_RS11670 at 278.876 kb on - strand, within EX31_RS11670 at 278.880 kb on - strand, within EX31_RS11670
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 274,815 + EX31_RS11660 0.39 +2.8 274,815 + EX31_RS11660 0.39 +0.8 274,816 - EX31_RS11660 0.39 +1.5 274,822 - EX31_RS11660 0.39 +2.1 274,894 - EX31_RS11660 0.44 +1.8 274,993 + EX31_RS11660 0.51 +1.5 274,993 + EX31_RS11660 0.51 -0.1 274,996 + EX31_RS11660 0.51 +2.3 275,031 + EX31_RS11660 0.54 +1.1 275,032 - EX31_RS11660 0.54 +0.8 275,032 - EX31_RS11660 0.54 +0.5 275,032 - EX31_RS11660 0.54 -1.6 275,139 - EX31_RS11660 0.62 -1.5 275,160 + EX31_RS11660 0.63 +1.1 275,161 - EX31_RS11660 0.63 +1.7 275,433 - EX31_RS11660 0.82 -1.1 275,433 - EX31_RS11660 0.82 +1.1 275,553 + -0.2 275,554 - -0.0 275,554 - -0.2 275,582 + +0.5 275,674 + -0.9 275,675 - +0.6 275,675 - +0.5 275,684 + +1.5 275,685 - -2.1 275,685 - -1.3 275,946 + EX31_RS11665 0.11 +0.5 275,979 + EX31_RS11665 0.13 +0.5 275,979 + EX31_RS11665 0.13 -2.1 275,980 - EX31_RS11665 0.13 -1.5 276,036 + EX31_RS11665 0.15 +0.0 276,037 - EX31_RS11665 0.15 -1.1 276,077 + EX31_RS11665 0.17 +0.4 276,078 - EX31_RS11665 0.17 -0.5 276,208 + EX31_RS11665 0.22 +0.5 276,209 - EX31_RS11665 0.22 -0.2 276,264 - EX31_RS11665 0.25 -3.0 276,317 + EX31_RS11665 0.27 +1.1 276,317 + EX31_RS11665 0.27 +1.9 276,317 + EX31_RS11665 0.27 +0.5 276,317 + EX31_RS11665 0.27 +0.2 276,317 + EX31_RS11665 0.27 -1.0 276,318 - EX31_RS11665 0.27 +2.5 276,318 - EX31_RS11665 0.27 -0.9 276,709 + EX31_RS11665 0.43 +0.7 276,783 - EX31_RS11665 0.46 +1.9 276,875 - EX31_RS11665 0.50 +1.5 277,052 + EX31_RS11665 0.58 -0.1 277,053 - EX31_RS11665 0.58 +1.1 277,075 + EX31_RS11665 0.59 -0.7 277,075 + EX31_RS11665 0.59 +0.1 277,076 - EX31_RS11665 0.59 -1.5 277,076 - EX31_RS11665 0.59 +0.9 277,123 - EX31_RS11665 0.61 -0.3 277,174 + EX31_RS11665 0.63 +0.5 277,388 + EX31_RS11665 0.72 -1.1 277,550 + EX31_RS11665 0.79 -0.7 277,550 + EX31_RS11665 0.79 -2.1 277,553 + EX31_RS11665 0.79 -0.4 277,553 + EX31_RS11665 0.79 +0.5 277,554 - EX31_RS11665 0.79 -1.0 277,554 - EX31_RS11665 0.79 +2.8 277,629 + EX31_RS11665 0.82 -0.1 277,629 + EX31_RS11665 0.82 +0.2 277,629 + EX31_RS11665 0.82 +0.5 277,659 + EX31_RS11665 0.83 +0.6 277,963 + +0.8 278,017 + +0.5 278,058 - -1.1 278,153 - +0.8 278,155 - +1.1 278,155 - +0.1 278,155 - -0.1 278,340 + EX31_RS11670 0.22 -0.5 278,875 + EX31_RS11670 0.75 -0.5 278,876 - EX31_RS11670 0.75 -1.1 278,880 - EX31_RS11670 0.75 +0.2
Or see this region's nucleotide sequence