Strain Fitness in Rahnella sp. WP5 around EX31_RS11235

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11230 and EX31_RS11235 are separated by 201 nucleotidesEX31_RS11235 and EX31_RS11240 are separated by 15 nucleotidesEX31_RS11240 and EX31_RS11245 are separated by 15 nucleotides EX31_RS11230: EX31_RS11230 - amidohydrolase, at 178,982 to 180,166 _RS11230 EX31_RS11235: EX31_RS11235 - ABC transporter substrate-binding protein, at 180,368 to 181,300 _RS11235 EX31_RS11240: EX31_RS11240 - GNAT family N-acetyltransferase, at 181,316 to 181,831 _RS11240 EX31_RS11245: EX31_RS11245 - amino acid ABC transporter permease, at 181,847 to 182,761 _RS11245 Position (kb) 180 181 182Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 179.392 kb on - strand, within EX31_RS11230at 179.446 kb on + strand, within EX31_RS11230at 179.491 kb on + strand, within EX31_RS11230at 179.568 kb on + strand, within EX31_RS11230at 179.569 kb on - strand, within EX31_RS11230at 179.742 kb on + strand, within EX31_RS11230at 179.743 kb on - strand, within EX31_RS11230at 179.743 kb on - strand, within EX31_RS11230at 179.743 kb on - strand, within EX31_RS11230at 179.743 kb on - strand, within EX31_RS11230at 179.743 kb on - strand, within EX31_RS11230at 179.783 kb on + strand, within EX31_RS11230at 179.783 kb on + strand, within EX31_RS11230at 179.783 kb on + strand, within EX31_RS11230at 179.783 kb on + strand, within EX31_RS11230at 179.783 kb on + strand, within EX31_RS11230at 179.784 kb on - strand, within EX31_RS11230at 179.905 kb on + strand, within EX31_RS11230at 179.905 kb on + strand, within EX31_RS11230at 179.954 kb on + strand, within EX31_RS11230at 179.955 kb on - strand, within EX31_RS11230at 179.955 kb on - strand, within EX31_RS11230at 179.955 kb on - strand, within EX31_RS11230at 179.967 kb on + strand, within EX31_RS11230at 180.005 kb on + strand, within EX31_RS11230at 180.006 kb on - strand, within EX31_RS11230at 180.079 kb on + strandat 180.080 kb on - strandat 180.080 kb on - strandat 180.102 kb on - strandat 180.242 kb on + strandat 180.269 kb on + strandat 180.283 kb on + strandat 180.339 kb on + strandat 180.340 kb on - strandat 180.363 kb on + strandat 180.379 kb on + strandat 180.414 kb on + strandat 180.415 kb on - strandat 180.451 kb on + strandat 180.451 kb on + strandat 180.452 kb on - strandat 180.529 kb on + strand, within EX31_RS11235at 180.529 kb on + strand, within EX31_RS11235at 180.530 kb on - strand, within EX31_RS11235at 180.599 kb on + strand, within EX31_RS11235at 180.614 kb on - strand, within EX31_RS11235at 180.666 kb on + strand, within EX31_RS11235at 180.749 kb on + strand, within EX31_RS11235at 180.750 kb on - strand, within EX31_RS11235at 180.758 kb on - strand, within EX31_RS11235at 180.775 kb on + strand, within EX31_RS11235at 180.776 kb on - strand, within EX31_RS11235at 180.776 kb on - strand, within EX31_RS11235at 180.800 kb on + strand, within EX31_RS11235at 180.811 kb on + strand, within EX31_RS11235at 180.811 kb on + strand, within EX31_RS11235at 180.824 kb on + strand, within EX31_RS11235at 180.824 kb on + strand, within EX31_RS11235at 180.824 kb on + strand, within EX31_RS11235at 180.889 kb on + strand, within EX31_RS11235at 180.889 kb on + strand, within EX31_RS11235at 180.890 kb on - strand, within EX31_RS11235at 180.980 kb on + strand, within EX31_RS11235at 180.980 kb on + strand, within EX31_RS11235at 180.980 kb on + strand, within EX31_RS11235at 180.980 kb on + strand, within EX31_RS11235at 180.981 kb on - strand, within EX31_RS11235at 180.981 kb on - strand, within EX31_RS11235at 181.064 kb on + strand, within EX31_RS11235at 181.065 kb on - strand, within EX31_RS11235at 181.217 kb on + strandat 181.218 kb on - strandat 181.218 kb on - strandat 181.218 kb on - strandat 181.328 kb on - strandat 181.694 kb on + strand, within EX31_RS11240at 181.694 kb on + strand, within EX31_RS11240at 181.695 kb on - strand, within EX31_RS11240at 181.749 kb on - strand, within EX31_RS11240at 181.763 kb on + strand, within EX31_RS11240at 181.846 kb on - strandat 182.002 kb on - strand, within EX31_RS11245at 182.002 kb on - strand, within EX31_RS11245at 182.137 kb on - strand, within EX31_RS11245at 182.137 kb on - strand, within EX31_RS11245at 182.159 kb on + strand, within EX31_RS11245at 182.160 kb on - strand, within EX31_RS11245at 182.161 kb on + strand, within EX31_RS11245at 182.228 kb on + strand, within EX31_RS11245at 182.228 kb on + strand, within EX31_RS11245

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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179,392 - EX31_RS11230 0.35 -1.1
179,446 + EX31_RS11230 0.39 -1.0
179,491 + EX31_RS11230 0.43 -0.2
179,568 + EX31_RS11230 0.49 -0.1
179,569 - EX31_RS11230 0.50 +1.1
179,742 + EX31_RS11230 0.64 +1.0
179,743 - EX31_RS11230 0.64 +0.5
179,743 - EX31_RS11230 0.64 -2.3
179,743 - EX31_RS11230 0.64 +3.8
179,743 - EX31_RS11230 0.64 -0.5
179,743 - EX31_RS11230 0.64 +2.1
179,783 + EX31_RS11230 0.68 +0.7
179,783 + EX31_RS11230 0.68 -0.8
179,783 + EX31_RS11230 0.68 +0.1
179,783 + EX31_RS11230 0.68 +0.1
179,783 + EX31_RS11230 0.68 +3.1
179,784 - EX31_RS11230 0.68 +1.2
179,905 + EX31_RS11230 0.78 -0.4
179,905 + EX31_RS11230 0.78 -0.5
179,954 + EX31_RS11230 0.82 +0.2
179,955 - EX31_RS11230 0.82 -1.1
179,955 - EX31_RS11230 0.82 -0.7
179,955 - EX31_RS11230 0.82 -0.4
179,967 + EX31_RS11230 0.83 +0.5
180,005 + EX31_RS11230 0.86 -0.4
180,006 - EX31_RS11230 0.86 -1.1
180,079 + +0.5
180,080 - +0.5
180,080 - +1.1
180,102 - -0.1
180,242 + +0.3
180,269 + +0.5
180,283 + -0.5
180,339 + -0.8
180,340 - +1.0
180,363 + -0.8
180,379 + +0.8
180,414 + +0.9
180,415 - -0.5
180,451 + +0.5
180,451 + -0.5
180,452 - -0.5
180,529 + EX31_RS11235 0.17 +0.5
180,529 + EX31_RS11235 0.17 +0.8
180,530 - EX31_RS11235 0.17 +0.5
180,599 + EX31_RS11235 0.25 +1.1
180,614 - EX31_RS11235 0.26 +0.5
180,666 + EX31_RS11235 0.32 -0.8
180,749 + EX31_RS11235 0.41 -0.1
180,750 - EX31_RS11235 0.41 +1.1
180,758 - EX31_RS11235 0.42 -1.0
180,775 + EX31_RS11235 0.44 +0.5
180,776 - EX31_RS11235 0.44 +0.4
180,776 - EX31_RS11235 0.44 +0.5
180,800 + EX31_RS11235 0.46 -0.5
180,811 + EX31_RS11235 0.47 -1.2
180,811 + EX31_RS11235 0.47 -1.3
180,824 + EX31_RS11235 0.49 -1.0
180,824 + EX31_RS11235 0.49 +1.2
180,824 + EX31_RS11235 0.49 +0.8
180,889 + EX31_RS11235 0.56 +0.5
180,889 + EX31_RS11235 0.56 -0.2
180,890 - EX31_RS11235 0.56 +0.5
180,980 + EX31_RS11235 0.66 -0.9
180,980 + EX31_RS11235 0.66 +0.1
180,980 + EX31_RS11235 0.66 -0.2
180,980 + EX31_RS11235 0.66 -3.7
180,981 - EX31_RS11235 0.66 -0.9
180,981 - EX31_RS11235 0.66 -1.8
181,064 + EX31_RS11235 0.75 -1.4
181,065 - EX31_RS11235 0.75 -0.8
181,217 + +0.5
181,218 - -0.5
181,218 - +1.0
181,218 - +0.5
181,328 - +3.9
181,694 + EX31_RS11240 0.73 -1.1
181,694 + EX31_RS11240 0.73 -0.3
181,695 - EX31_RS11240 0.73 +0.8
181,749 - EX31_RS11240 0.84 +0.5
181,763 + EX31_RS11240 0.87 +2.5
181,846 - +1.2
182,002 - EX31_RS11245 0.17 +0.2
182,002 - EX31_RS11245 0.17 +2.8
182,137 - EX31_RS11245 0.32 +0.9
182,137 - EX31_RS11245 0.32 +1.5
182,159 + EX31_RS11245 0.34 +1.7
182,160 - EX31_RS11245 0.34 +0.5
182,161 + EX31_RS11245 0.34 -1.2
182,228 + EX31_RS11245 0.42 -0.8
182,228 + EX31_RS11245 0.42 -0.0

Or see this region's nucleotide sequence