Strain Fitness in Rahnella sp. WP5 around EX31_RS11155

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11145 and EX31_RS11150 are separated by 229 nucleotidesEX31_RS11150 and EX31_RS11155 overlap by 27 nucleotidesEX31_RS11155 and EX31_RS11160 are separated by 28 nucleotides EX31_RS11145: EX31_RS11145 - LLM class flavin-dependent oxidoreductase, at 160,788 to 161,813 _RS11145 EX31_RS11150: EX31_RS11150 - efflux transporter periplasmic adaptor subunit, at 162,043 to 162,312 _RS11150 EX31_RS11155: EX31_RS11155 - DHA2 family efflux MFS transporter permease subunit, at 162,286 to 163,668 _RS11155 EX31_RS11160: EX31_RS11160 - hypothetical protein, at 163,697 to 164,677 _RS11160 Position (kb) 162 163 164Strain fitness (log2 ratio) -2 -1 0 1 2 3at 161.548 kb on + strand, within EX31_RS11145at 161.548 kb on + strand, within EX31_RS11145at 161.548 kb on + strand, within EX31_RS11145at 161.548 kb on + strand, within EX31_RS11145at 161.548 kb on + strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.734 kb on - strandat 161.875 kb on + strandat 161.887 kb on + strandat 161.888 kb on - strandat 161.888 kb on - strandat 161.933 kb on - strandat 161.933 kb on - strandat 161.933 kb on - strandat 161.953 kb on + strandat 162.044 kb on + strandat 162.078 kb on + strand, within EX31_RS11150at 162.078 kb on + strand, within EX31_RS11150at 162.079 kb on - strand, within EX31_RS11150at 162.165 kb on - strand, within EX31_RS11150at 162.171 kb on + strand, within EX31_RS11150at 162.172 kb on - strand, within EX31_RS11150at 162.209 kb on + strand, within EX31_RS11150at 162.210 kb on - strand, within EX31_RS11150at 162.265 kb on - strand, within EX31_RS11150at 162.306 kb on + strandat 162.306 kb on + strandat 162.307 kb on - strandat 162.307 kb on - strandat 162.307 kb on - strandat 162.307 kb on - strandat 162.307 kb on - strandat 162.356 kb on + strandat 162.356 kb on + strandat 162.356 kb on + strandat 162.357 kb on - strandat 162.519 kb on + strand, within EX31_RS11155at 162.520 kb on - strand, within EX31_RS11155at 162.520 kb on - strand, within EX31_RS11155at 162.546 kb on - strand, within EX31_RS11155at 162.736 kb on - strand, within EX31_RS11155at 162.736 kb on - strand, within EX31_RS11155at 162.784 kb on + strand, within EX31_RS11155at 162.856 kb on - strand, within EX31_RS11155at 162.856 kb on - strand, within EX31_RS11155at 162.874 kb on + strand, within EX31_RS11155at 162.874 kb on + strand, within EX31_RS11155at 162.876 kb on + strand, within EX31_RS11155at 162.967 kb on + strand, within EX31_RS11155at 163.134 kb on + strand, within EX31_RS11155at 163.135 kb on - strand, within EX31_RS11155at 163.136 kb on + strand, within EX31_RS11155at 163.136 kb on + strand, within EX31_RS11155at 163.136 kb on + strand, within EX31_RS11155at 163.136 kb on + strand, within EX31_RS11155at 163.137 kb on - strand, within EX31_RS11155at 163.137 kb on - strand, within EX31_RS11155at 163.137 kb on - strand, within EX31_RS11155at 163.137 kb on - strand, within EX31_RS11155at 163.248 kb on + strand, within EX31_RS11155at 163.248 kb on + strand, within EX31_RS11155at 163.264 kb on - strand, within EX31_RS11155at 163.264 kb on - strand, within EX31_RS11155at 163.271 kb on + strand, within EX31_RS11155at 163.272 kb on - strand, within EX31_RS11155at 163.304 kb on + strand, within EX31_RS11155at 163.304 kb on + strand, within EX31_RS11155at 163.305 kb on - strand, within EX31_RS11155at 163.321 kb on + strand, within EX31_RS11155at 163.321 kb on + strand, within EX31_RS11155at 163.321 kb on + strand, within EX31_RS11155at 163.322 kb on - strand, within EX31_RS11155at 163.322 kb on - strand, within EX31_RS11155at 163.322 kb on - strand, within EX31_RS11155at 163.322 kb on - strand, within EX31_RS11155at 163.363 kb on - strand, within EX31_RS11155at 163.406 kb on + strand, within EX31_RS11155at 163.406 kb on + strand, within EX31_RS11155at 163.406 kb on + strand, within EX31_RS11155at 163.407 kb on - strand, within EX31_RS11155at 163.514 kb on - strand, within EX31_RS11155at 163.533 kb on + strandat 163.614 kb on - strandat 163.658 kb on - strandat 163.658 kb on - strandat 163.669 kb on - strandat 163.669 kb on - strandat 163.669 kb on - strandat 163.669 kb on - strandat 163.669 kb on - strandat 163.669 kb on - strandat 163.682 kb on + strandat 163.682 kb on + strandat 163.682 kb on + strandat 163.682 kb on + strandat 163.682 kb on + strandat 163.683 kb on - strandat 163.683 kb on - strandat 163.683 kb on - strandat 163.683 kb on - strandat 163.683 kb on - strandat 163.683 kb on - strandat 163.683 kb on - strandat 163.699 kb on - strandat 163.699 kb on - strandat 163.816 kb on + strand, within EX31_RS11160at 163.835 kb on - strand, within EX31_RS11160at 163.852 kb on - strand, within EX31_RS11160at 163.866 kb on + strand, within EX31_RS11160at 163.867 kb on - strand, within EX31_RS11160at 163.867 kb on - strand, within EX31_RS11160at 163.867 kb on - strand, within EX31_RS11160at 163.882 kb on + strand, within EX31_RS11160at 163.883 kb on - strand, within EX31_RS11160at 164.019 kb on - strand, within EX31_RS11160at 164.138 kb on - strand, within EX31_RS11160at 164.139 kb on + strand, within EX31_RS11160at 164.139 kb on + strand, within EX31_RS11160at 164.139 kb on + strand, within EX31_RS11160at 164.139 kb on + strand, within EX31_RS11160at 164.140 kb on - strand, within EX31_RS11160at 164.272 kb on + strand, within EX31_RS11160at 164.273 kb on - strand, within EX31_RS11160at 164.496 kb on + strand, within EX31_RS11160at 164.496 kb on + strand, within EX31_RS11160at 164.557 kb on + strand, within EX31_RS11160at 164.658 kb on - strandat 164.662 kb on + strandat 164.662 kb on + strandat 164.662 kb on + strandat 164.663 kb on - strandat 164.663 kb on - strandat 164.663 kb on - strandat 164.663 kb on - strandat 164.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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161,548 + EX31_RS11145 0.74 +1.5
161,548 + EX31_RS11145 0.74 +1.0
161,548 + EX31_RS11145 0.74 -0.2
161,548 + EX31_RS11145 0.74 +0.8
161,548 + EX31_RS11145 0.74 -1.5
161,549 - EX31_RS11145 0.74 +0.4
161,549 - EX31_RS11145 0.74 -0.9
161,549 - EX31_RS11145 0.74 +0.4
161,549 - EX31_RS11145 0.74 +0.4
161,549 - EX31_RS11145 0.74 -0.3
161,549 - EX31_RS11145 0.74 -0.1
161,549 - EX31_RS11145 0.74 -0.1
161,549 - EX31_RS11145 0.74 +0.4
161,549 - EX31_RS11145 0.74 +0.3
161,549 - EX31_RS11145 0.74 -0.5
161,734 - -1.1
161,875 + -1.8
161,887 + +0.5
161,888 - -1.2
161,888 - -0.2
161,933 - -0.2
161,933 - +0.5
161,933 - -0.5
161,953 + +0.5
162,044 + +0.9
162,078 + EX31_RS11150 0.13 +0.5
162,078 + EX31_RS11150 0.13 +0.3
162,079 - EX31_RS11150 0.13 -2.5
162,165 - EX31_RS11150 0.45 +0.5
162,171 + EX31_RS11150 0.47 +0.3
162,172 - EX31_RS11150 0.48 -0.5
162,209 + EX31_RS11150 0.61 -0.2
162,210 - EX31_RS11150 0.62 -1.5
162,265 - EX31_RS11150 0.82 -0.5
162,306 + +0.1
162,306 + +1.5
162,307 - -0.5
162,307 - -0.4
162,307 - -0.8
162,307 - +1.5
162,307 - +0.8
162,356 + -0.5
162,356 + -0.5
162,356 + -0.3
162,357 - +0.5
162,519 + EX31_RS11155 0.17 +1.1
162,520 - EX31_RS11155 0.17 -0.6
162,520 - EX31_RS11155 0.17 +1.0
162,546 - EX31_RS11155 0.19 +1.5
162,736 - EX31_RS11155 0.33 +2.1
162,736 - EX31_RS11155 0.33 +0.7
162,784 + EX31_RS11155 0.36 -1.5
162,856 - EX31_RS11155 0.41 +2.2
162,856 - EX31_RS11155 0.41 +1.9
162,874 + EX31_RS11155 0.43 +0.1
162,874 + EX31_RS11155 0.43 +0.4
162,876 + EX31_RS11155 0.43 +1.1
162,967 + EX31_RS11155 0.49 -0.1
163,134 + EX31_RS11155 0.61 -1.1
163,135 - EX31_RS11155 0.61 -2.0
163,136 + EX31_RS11155 0.61 -1.3
163,136 + EX31_RS11155 0.61 -2.7
163,136 + EX31_RS11155 0.61 -1.3
163,136 + EX31_RS11155 0.61 +0.5
163,137 - EX31_RS11155 0.62 -0.1
163,137 - EX31_RS11155 0.62 +0.5
163,137 - EX31_RS11155 0.62 +0.6
163,137 - EX31_RS11155 0.62 -0.3
163,248 + EX31_RS11155 0.70 +0.3
163,248 + EX31_RS11155 0.70 +0.5
163,264 - EX31_RS11155 0.71 +0.5
163,264 - EX31_RS11155 0.71 +0.1
163,271 + EX31_RS11155 0.71 +0.4
163,272 - EX31_RS11155 0.71 +0.8
163,304 + EX31_RS11155 0.74 +1.8
163,304 + EX31_RS11155 0.74 +1.5
163,305 - EX31_RS11155 0.74 +0.9
163,321 + EX31_RS11155 0.75 -1.5
163,321 + EX31_RS11155 0.75 +0.2
163,321 + EX31_RS11155 0.75 +0.5
163,322 - EX31_RS11155 0.75 +0.2
163,322 - EX31_RS11155 0.75 +0.7
163,322 - EX31_RS11155 0.75 -1.8
163,322 - EX31_RS11155 0.75 -1.1
163,363 - EX31_RS11155 0.78 -0.5
163,406 + EX31_RS11155 0.81 +0.5
163,406 + EX31_RS11155 0.81 +1.7
163,406 + EX31_RS11155 0.81 +1.3
163,407 - EX31_RS11155 0.81 +0.3
163,514 - EX31_RS11155 0.89 +0.2
163,533 + -0.5
163,614 - -0.1
163,658 - +0.5
163,658 - +0.5
163,669 - +0.8
163,669 - -0.4
163,669 - -0.8
163,669 - +0.3
163,669 - +0.9
163,669 - -2.1
163,682 + +3.1
163,682 + +2.1
163,682 + -0.0
163,682 + +0.3
163,682 + -1.5
163,683 - +2.5
163,683 - -0.2
163,683 - +1.5
163,683 - +1.9
163,683 - +0.5
163,683 - -1.5
163,683 - +0.2
163,699 - -0.7
163,699 - -0.3
163,816 + EX31_RS11160 0.12 -1.3
163,835 - EX31_RS11160 0.14 +0.4
163,852 - EX31_RS11160 0.16 +0.1
163,866 + EX31_RS11160 0.17 -1.5
163,867 - EX31_RS11160 0.17 -0.1
163,867 - EX31_RS11160 0.17 -0.2
163,867 - EX31_RS11160 0.17 +0.6
163,882 + EX31_RS11160 0.19 +1.5
163,883 - EX31_RS11160 0.19 +1.4
164,019 - EX31_RS11160 0.33 -1.2
164,138 - EX31_RS11160 0.45 +0.2
164,139 + EX31_RS11160 0.45 +0.5
164,139 + EX31_RS11160 0.45 +1.5
164,139 + EX31_RS11160 0.45 -0.7
164,139 + EX31_RS11160 0.45 -0.4
164,140 - EX31_RS11160 0.45 -0.1
164,272 + EX31_RS11160 0.59 -0.1
164,273 - EX31_RS11160 0.59 +0.3
164,496 + EX31_RS11160 0.81 +0.1
164,496 + EX31_RS11160 0.81 -0.8
164,557 + EX31_RS11160 0.88 -0.9
164,658 - +1.5
164,662 + -1.1
164,662 + -2.5
164,662 + +0.7
164,663 - +0.5
164,663 - -0.5
164,663 - +2.1
164,663 - +0.5
164,663 - +0.8

Or see this region's nucleotide sequence