Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09830 and EX31_RS09835 are separated by 60 nucleotides EX31_RS09835 and EX31_RS09840 are separated by 42 nucleotides EX31_RS09840 and EX31_RS09845 are separated by 272 nucleotides EX31_RS09845 and EX31_RS09850 are separated by 231 nucleotides
EX31_RS09830: EX31_RS09830 - formate C-acetyltransferase/glycerol dehydratase family glycyl radical enzyme, at 173,021 to 175,453
_RS09830
EX31_RS09835: EX31_RS09835 - DeoR/GlpR transcriptional regulator, at 175,514 to 176,257
_RS09835
EX31_RS09840: EX31_RS09840 - L-ribulose-5-phosphate 4-epimerase, at 176,300 to 176,995
_RS09840
EX31_RS09845: EX31_RS09845 - osmotically-inducible lipoprotein OsmB, at 177,268 to 177,486
_RS09845
EX31_RS09850: EX31_RS09850 - stress response translation initiation inhibitor YciH, at 177,718 to 178,047
_RS09850
Position (kb) 176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 175.300 kb on + strand at 175.320 kb on + strand at 175.321 kb on - strand at 175.324 kb on + strand at 175.324 kb on + strand at 175.325 kb on - strand at 175.350 kb on - strand at 175.423 kb on + strand at 175.423 kb on + strand at 175.423 kb on + strand at 175.424 kb on - strand at 175.424 kb on - strand at 175.424 kb on - strand at 175.426 kb on + strand at 175.452 kb on - strand at 175.500 kb on + strand at 175.513 kb on + strand at 175.534 kb on + strand at 175.627 kb on + strand, within EX31_RS09835 at 175.649 kb on + strand, within EX31_RS09835 at 175.682 kb on - strand, within EX31_RS09835 at 175.824 kb on - strand, within EX31_RS09835 at 175.868 kb on + strand, within EX31_RS09835 at 175.869 kb on - strand, within EX31_RS09835 at 175.891 kb on + strand, within EX31_RS09835 at 175.891 kb on + strand, within EX31_RS09835 at 176.055 kb on + strand, within EX31_RS09835 at 176.055 kb on + strand, within EX31_RS09835 at 176.055 kb on + strand, within EX31_RS09835 at 176.056 kb on - strand, within EX31_RS09835 at 176.056 kb on - strand, within EX31_RS09835 at 176.207 kb on + strand at 176.237 kb on - strand at 176.260 kb on + strand at 176.260 kb on + strand at 176.261 kb on - strand at 176.267 kb on - strand at 176.301 kb on + strand at 176.302 kb on - strand at 176.314 kb on - strand at 176.347 kb on + strand at 176.347 kb on + strand at 176.348 kb on - strand at 176.413 kb on - strand, within EX31_RS09840 at 176.498 kb on + strand, within EX31_RS09840 at 176.499 kb on - strand, within EX31_RS09840 at 176.499 kb on - strand, within EX31_RS09840 at 176.575 kb on - strand, within EX31_RS09840 at 176.634 kb on + strand, within EX31_RS09840 at 176.710 kb on + strand, within EX31_RS09840 at 176.746 kb on - strand, within EX31_RS09840 at 176.924 kb on - strand, within EX31_RS09840 at 176.966 kb on + strand at 176.970 kb on - strand at 176.970 kb on - strand at 176.990 kb on + strand at 176.990 kb on + strand at 177.012 kb on + strand at 177.013 kb on - strand at 177.013 kb on - strand at 177.077 kb on - strand at 177.095 kb on + strand at 177.095 kb on + strand at 177.183 kb on + strand at 177.206 kb on + strand at 177.206 kb on + strand at 177.207 kb on - strand at 177.226 kb on + strand at 177.226 kb on + strand at 177.230 kb on + strand at 177.283 kb on - strand at 177.351 kb on + strand, within EX31_RS09845 at 177.352 kb on - strand, within EX31_RS09845 at 177.428 kb on + strand, within EX31_RS09845 at 177.437 kb on + strand, within EX31_RS09845 at 177.437 kb on + strand, within EX31_RS09845 at 177.437 kb on + strand, within EX31_RS09845 at 177.437 kb on + strand, within EX31_RS09845 at 177.459 kb on + strand, within EX31_RS09845 at 177.460 kb on - strand, within EX31_RS09845 at 177.480 kb on + strand at 177.501 kb on + strand at 177.502 kb on - strand at 177.508 kb on + strand at 177.512 kb on + strand at 177.549 kb on - strand at 177.648 kb on - strand at 177.685 kb on - strand at 177.685 kb on - strand at 177.688 kb on - strand at 177.709 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 175,300 + -1.0 175,320 + +0.7 175,321 - +0.4 175,324 + -0.6 175,324 + +0.7 175,325 - +1.7 175,350 - -0.1 175,423 + +0.4 175,423 + -0.2 175,423 + -0.6 175,424 - +1.0 175,424 - +1.4 175,424 - +0.8 175,426 + +0.2 175,452 - +0.9 175,500 + +2.7 175,513 + -0.6 175,534 + +0.3 175,627 + EX31_RS09835 0.15 +0.0 175,649 + EX31_RS09835 0.18 +0.2 175,682 - EX31_RS09835 0.23 +3.7 175,824 - EX31_RS09835 0.42 -1.2 175,868 + EX31_RS09835 0.48 +0.2 175,869 - EX31_RS09835 0.48 -0.0 175,891 + EX31_RS09835 0.51 +1.0 175,891 + EX31_RS09835 0.51 -1.2 176,055 + EX31_RS09835 0.73 -0.9 176,055 + EX31_RS09835 0.73 +0.4 176,055 + EX31_RS09835 0.73 +1.0 176,056 - EX31_RS09835 0.73 +0.4 176,056 - EX31_RS09835 0.73 +1.0 176,207 + -0.6 176,237 - -0.2 176,260 + -0.6 176,260 + -0.2 176,261 - -2.9 176,267 - +1.4 176,301 + -1.4 176,302 - +1.1 176,314 - -0.6 176,347 + +1.4 176,347 + -0.6 176,348 - -2.8 176,413 - EX31_RS09840 0.16 -1.9 176,498 + EX31_RS09840 0.28 -0.6 176,499 - EX31_RS09840 0.29 -1.7 176,499 - EX31_RS09840 0.29 -1.9 176,575 - EX31_RS09840 0.40 -1.8 176,634 + EX31_RS09840 0.48 -2.1 176,710 + EX31_RS09840 0.59 -1.2 176,746 - EX31_RS09840 0.64 -1.2 176,924 - EX31_RS09840 0.90 -0.6 176,966 + -0.2 176,970 - -1.9 176,970 - -0.3 176,990 + +0.2 176,990 + -1.6 177,012 + +0.6 177,013 - -0.9 177,013 - +0.4 177,077 - +0.4 177,095 + -0.6 177,095 + -0.4 177,183 + -1.6 177,206 + -1.4 177,206 + -0.5 177,207 - -0.6 177,226 + -0.1 177,226 + -2.2 177,230 + -1.6 177,283 - +0.4 177,351 + EX31_RS09845 0.38 +0.7 177,352 - EX31_RS09845 0.38 -0.6 177,428 + EX31_RS09845 0.73 -0.2 177,437 + EX31_RS09845 0.77 -0.2 177,437 + EX31_RS09845 0.77 -0.9 177,437 + EX31_RS09845 0.77 +0.7 177,437 + EX31_RS09845 0.77 -0.7 177,459 + EX31_RS09845 0.87 +1.7 177,460 - EX31_RS09845 0.88 +0.4 177,480 + -1.6 177,501 + +2.6 177,502 - +1.4 177,508 + +0.1 177,512 + +0.4 177,549 - -0.3 177,648 - +2.0 177,685 - -0.6 177,685 - -0.3 177,688 - +1.4 177,709 - -0.1
Or see this region's nucleotide sequence