Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09745 and EX31_RS09750 are separated by 181 nucleotides EX31_RS09750 and EX31_RS09755 overlap by 8 nucleotides
EX31_RS09745: EX31_RS09745 - XylR family transcriptional regulator, at 152,639 to 153,826
_RS09745
EX31_RS09750: EX31_RS09750 - sugar ABC transporter permease, at 154,008 to 155,207
_RS09750
EX31_RS09755: EX31_RS09755 - xylose ABC transporter ATP-binding protein, at 155,200 to 156,705
_RS09755
Position (kb) 154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 153.011 kb on + strand, within EX31_RS09745 at 153.051 kb on - strand, within EX31_RS09745 at 153.119 kb on + strand, within EX31_RS09745 at 153.494 kb on - strand, within EX31_RS09745 at 153.516 kb on + strand, within EX31_RS09745 at 153.517 kb on - strand, within EX31_RS09745 at 153.517 kb on - strand, within EX31_RS09745 at 153.517 kb on - strand, within EX31_RS09745 at 153.532 kb on + strand, within EX31_RS09745 at 153.533 kb on - strand, within EX31_RS09745 at 153.534 kb on + strand, within EX31_RS09745 at 153.534 kb on + strand, within EX31_RS09745 at 153.534 kb on + strand, within EX31_RS09745 at 153.534 kb on + strand, within EX31_RS09745 at 153.534 kb on + strand, within EX31_RS09745 at 153.535 kb on - strand, within EX31_RS09745 at 153.535 kb on - strand, within EX31_RS09745 at 153.535 kb on - strand, within EX31_RS09745 at 153.671 kb on - strand, within EX31_RS09745 at 153.680 kb on + strand, within EX31_RS09745 at 153.680 kb on + strand, within EX31_RS09745 at 153.791 kb on - strand at 153.851 kb on + strand at 153.852 kb on - strand at 153.857 kb on - strand at 153.874 kb on + strand at 153.907 kb on - strand at 153.924 kb on + strand at 153.924 kb on + strand at 153.925 kb on - strand at 153.925 kb on - strand at 153.925 kb on - strand at 153.925 kb on - strand at 153.928 kb on + strand at 153.935 kb on - strand at 153.935 kb on - strand at 153.935 kb on - strand at 153.939 kb on + strand at 153.971 kb on - strand at 153.971 kb on - strand at 154.010 kb on - strand at 154.075 kb on + strand at 154.075 kb on + strand at 154.093 kb on - strand at 154.380 kb on - strand, within EX31_RS09750 at 154.385 kb on - strand, within EX31_RS09750 at 154.385 kb on - strand, within EX31_RS09750 at 154.385 kb on - strand, within EX31_RS09750 at 154.385 kb on - strand, within EX31_RS09750 at 154.385 kb on - strand, within EX31_RS09750 at 154.388 kb on + strand, within EX31_RS09750 at 154.492 kb on + strand, within EX31_RS09750 at 154.638 kb on - strand, within EX31_RS09750 at 154.663 kb on + strand, within EX31_RS09750 at 154.664 kb on - strand, within EX31_RS09750 at 154.664 kb on - strand, within EX31_RS09750 at 154.664 kb on - strand, within EX31_RS09750 at 154.675 kb on - strand, within EX31_RS09750 at 154.675 kb on - strand, within EX31_RS09750 at 154.675 kb on - strand, within EX31_RS09750 at 154.675 kb on - strand, within EX31_RS09750 at 154.793 kb on - strand, within EX31_RS09750 at 154.834 kb on - strand, within EX31_RS09750 at 154.912 kb on - strand, within EX31_RS09750 at 155.024 kb on + strand, within EX31_RS09750 at 155.024 kb on + strand, within EX31_RS09750 at 155.024 kb on + strand, within EX31_RS09750 at 155.025 kb on - strand, within EX31_RS09750 at 155.038 kb on + strand, within EX31_RS09750 at 155.038 kb on + strand, within EX31_RS09750 at 155.038 kb on + strand, within EX31_RS09750 at 155.039 kb on - strand, within EX31_RS09750 at 155.039 kb on - strand, within EX31_RS09750 at 155.039 kb on - strand, within EX31_RS09750 at 155.039 kb on - strand, within EX31_RS09750 at 155.039 kb on - strand, within EX31_RS09750 at 155.039 kb on - strand, within EX31_RS09750 at 155.039 kb on - strand, within EX31_RS09750 at 155.072 kb on + strand, within EX31_RS09750 at 155.072 kb on + strand, within EX31_RS09750 at 155.118 kb on - strand at 155.207 kb on + strand at 155.207 kb on + strand at 155.207 kb on + strand at 155.207 kb on + strand at 155.208 kb on - strand at 155.208 kb on - strand at 155.208 kb on - strand at 155.208 kb on - strand at 155.208 kb on - strand at 155.251 kb on + strand at 155.257 kb on - strand at 155.353 kb on - strand, within EX31_RS09755 at 155.353 kb on - strand, within EX31_RS09755 at 155.353 kb on - strand, within EX31_RS09755 at 155.461 kb on + strand, within EX31_RS09755 at 155.640 kb on + strand, within EX31_RS09755 at 155.641 kb on - strand, within EX31_RS09755 at 155.641 kb on - strand, within EX31_RS09755 at 155.905 kb on - strand, within EX31_RS09755 at 155.947 kb on + strand, within EX31_RS09755 at 155.948 kb on - strand, within EX31_RS09755 at 155.950 kb on + strand, within EX31_RS09755 at 155.950 kb on + strand, within EX31_RS09755 at 155.950 kb on + strand, within EX31_RS09755 at 155.951 kb on - strand, within EX31_RS09755 at 155.951 kb on - strand, within EX31_RS09755 at 156.135 kb on - strand, within EX31_RS09755 at 156.135 kb on - strand, within EX31_RS09755 at 156.135 kb on - strand, within EX31_RS09755 at 156.139 kb on - strand, within EX31_RS09755
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 153,011 + EX31_RS09745 0.31 -1.9 153,051 - EX31_RS09745 0.35 -0.6 153,119 + EX31_RS09745 0.40 -2.4 153,494 - EX31_RS09745 0.72 -2.6 153,516 + EX31_RS09745 0.74 -2.3 153,517 - EX31_RS09745 0.74 -0.7 153,517 - EX31_RS09745 0.74 -2.9 153,517 - EX31_RS09745 0.74 -2.2 153,532 + EX31_RS09745 0.75 -1.2 153,533 - EX31_RS09745 0.75 -1.6 153,534 + EX31_RS09745 0.75 -1.2 153,534 + EX31_RS09745 0.75 -1.6 153,534 + EX31_RS09745 0.75 +0.1 153,534 + EX31_RS09745 0.75 -0.6 153,534 + EX31_RS09745 0.75 -0.6 153,535 - EX31_RS09745 0.75 -3.4 153,535 - EX31_RS09745 0.75 -1.6 153,535 - EX31_RS09745 0.75 -2.6 153,671 - EX31_RS09745 0.87 -2.4 153,680 + EX31_RS09745 0.88 -1.2 153,680 + EX31_RS09745 0.88 -1.9 153,791 - -0.2 153,851 + -2.2 153,852 - +2.2 153,857 - -0.6 153,874 + -1.2 153,907 - -0.5 153,924 + -2.2 153,924 + -1.2 153,925 - -1.5 153,925 - +1.4 153,925 - +2.4 153,925 - -0.6 153,928 + -0.6 153,935 - -1.4 153,935 - +1.0 153,935 - -1.7 153,939 + +0.4 153,971 - -0.0 153,971 - +0.1 154,010 - +1.3 154,075 + -0.3 154,075 + -1.2 154,093 - +0.3 154,380 - EX31_RS09750 0.31 +2.0 154,385 - EX31_RS09750 0.31 -0.6 154,385 - EX31_RS09750 0.31 -1.2 154,385 - EX31_RS09750 0.31 -0.6 154,385 - EX31_RS09750 0.31 +0.4 154,385 - EX31_RS09750 0.31 +2.4 154,388 + EX31_RS09750 0.32 -2.4 154,492 + EX31_RS09750 0.40 -1.2 154,638 - EX31_RS09750 0.53 -0.6 154,663 + EX31_RS09750 0.55 +0.1 154,664 - EX31_RS09750 0.55 -0.0 154,664 - EX31_RS09750 0.55 +0.1 154,664 - EX31_RS09750 0.55 -0.5 154,675 - EX31_RS09750 0.56 +0.4 154,675 - EX31_RS09750 0.56 +0.9 154,675 - EX31_RS09750 0.56 +0.4 154,675 - EX31_RS09750 0.56 +0.4 154,793 - EX31_RS09750 0.65 +0.3 154,834 - EX31_RS09750 0.69 -0.4 154,912 - EX31_RS09750 0.75 +0.4 155,024 + EX31_RS09750 0.85 -0.9 155,024 + EX31_RS09750 0.85 -0.0 155,024 + EX31_RS09750 0.85 -1.3 155,025 - EX31_RS09750 0.85 +0.4 155,038 + EX31_RS09750 0.86 +0.7 155,038 + EX31_RS09750 0.86 +1.4 155,038 + EX31_RS09750 0.86 -0.6 155,039 - EX31_RS09750 0.86 +1.4 155,039 - EX31_RS09750 0.86 +0.4 155,039 - EX31_RS09750 0.86 -0.6 155,039 - EX31_RS09750 0.86 +0.4 155,039 - EX31_RS09750 0.86 -0.9 155,039 - EX31_RS09750 0.86 -0.2 155,039 - EX31_RS09750 0.86 -0.2 155,072 + EX31_RS09750 0.89 -2.4 155,072 + EX31_RS09750 0.89 -0.2 155,118 - -0.8 155,207 + -0.6 155,207 + +0.4 155,207 + -1.0 155,207 + -1.9 155,208 - -0.5 155,208 - +0.0 155,208 - +1.7 155,208 - -1.3 155,208 - -1.2 155,251 + +0.8 155,257 - +2.0 155,353 - EX31_RS09755 0.10 +0.4 155,353 - EX31_RS09755 0.10 +2.4 155,353 - EX31_RS09755 0.10 +2.8 155,461 + EX31_RS09755 0.17 -1.6 155,640 + EX31_RS09755 0.29 -0.9 155,641 - EX31_RS09755 0.29 -2.8 155,641 - EX31_RS09755 0.29 -1.2 155,905 - EX31_RS09755 0.47 +1.4 155,947 + EX31_RS09755 0.50 -2.4 155,948 - EX31_RS09755 0.50 -0.6 155,950 + EX31_RS09755 0.50 -0.6 155,950 + EX31_RS09755 0.50 +0.7 155,950 + EX31_RS09755 0.50 +0.4 155,951 - EX31_RS09755 0.50 +0.4 155,951 - EX31_RS09755 0.50 -0.0 156,135 - EX31_RS09755 0.62 -1.2 156,135 - EX31_RS09755 0.62 -0.6 156,135 - EX31_RS09755 0.62 -0.2 156,139 - EX31_RS09755 0.62 +0.4
Or see this region's nucleotide sequence