Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09735 and EX31_RS09740 are separated by 30 nucleotides EX31_RS09740 and EX31_RS09745 are separated by 68 nucleotides
EX31_RS09735: EX31_RS09735 - glycoside-pentoside-hexuronide family transporter, at 148,848 to 150,215
_RS09735
EX31_RS09740: EX31_RS09740 - alpha-xylosidase, at 150,246 to 152,570
_RS09740
EX31_RS09745: EX31_RS09745 - XylR family transcriptional regulator, at 152,639 to 153,826
_RS09745
Position (kb) 150
151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 149.258 kb on + strand, within EX31_RS09735 at 149.258 kb on + strand, within EX31_RS09735 at 149.259 kb on - strand, within EX31_RS09735 at 149.279 kb on + strand, within EX31_RS09735 at 149.329 kb on + strand, within EX31_RS09735 at 149.329 kb on + strand, within EX31_RS09735 at 149.329 kb on + strand, within EX31_RS09735 at 149.329 kb on + strand, within EX31_RS09735 at 149.329 kb on + strand, within EX31_RS09735 at 149.329 kb on + strand, within EX31_RS09735 at 149.330 kb on - strand, within EX31_RS09735 at 149.330 kb on - strand, within EX31_RS09735 at 149.330 kb on - strand, within EX31_RS09735 at 149.330 kb on - strand, within EX31_RS09735 at 149.358 kb on - strand, within EX31_RS09735 at 149.604 kb on + strand, within EX31_RS09735 at 149.604 kb on + strand, within EX31_RS09735 at 149.604 kb on + strand, within EX31_RS09735 at 149.604 kb on + strand, within EX31_RS09735 at 149.604 kb on + strand, within EX31_RS09735 at 149.605 kb on - strand, within EX31_RS09735 at 149.605 kb on - strand, within EX31_RS09735 at 149.605 kb on - strand, within EX31_RS09735 at 149.605 kb on - strand, within EX31_RS09735 at 149.605 kb on - strand, within EX31_RS09735 at 149.607 kb on + strand, within EX31_RS09735 at 149.607 kb on + strand, within EX31_RS09735 at 149.607 kb on + strand, within EX31_RS09735 at 149.616 kb on + strand, within EX31_RS09735 at 149.616 kb on + strand, within EX31_RS09735 at 149.616 kb on + strand, within EX31_RS09735 at 149.617 kb on - strand, within EX31_RS09735 at 149.617 kb on - strand, within EX31_RS09735 at 149.662 kb on - strand, within EX31_RS09735 at 149.720 kb on + strand, within EX31_RS09735 at 149.720 kb on + strand, within EX31_RS09735 at 149.721 kb on - strand, within EX31_RS09735 at 149.813 kb on + strand, within EX31_RS09735 at 149.814 kb on - strand, within EX31_RS09735 at 149.814 kb on - strand, within EX31_RS09735 at 149.814 kb on - strand, within EX31_RS09735 at 149.887 kb on + strand, within EX31_RS09735 at 149.887 kb on + strand, within EX31_RS09735 at 149.888 kb on - strand, within EX31_RS09735 at 150.097 kb on - strand at 150.097 kb on - strand at 150.126 kb on + strand at 150.129 kb on + strand at 150.129 kb on + strand at 150.129 kb on + strand at 150.129 kb on + strand at 150.130 kb on - strand at 150.130 kb on - strand at 150.246 kb on - strand at 150.320 kb on - strand at 150.405 kb on - strand at 150.405 kb on - strand at 150.405 kb on - strand at 150.445 kb on + strand at 150.445 kb on + strand at 150.445 kb on + strand at 150.449 kb on + strand at 150.449 kb on + strand at 150.449 kb on + strand at 150.449 kb on + strand at 150.449 kb on + strand at 150.449 kb on + strand at 150.450 kb on - strand at 150.450 kb on - strand at 150.450 kb on - strand at 150.590 kb on + strand, within EX31_RS09740 at 150.594 kb on - strand, within EX31_RS09740 at 150.660 kb on + strand, within EX31_RS09740 at 150.660 kb on + strand, within EX31_RS09740 at 150.683 kb on + strand, within EX31_RS09740 at 150.684 kb on - strand, within EX31_RS09740 at 150.691 kb on - strand, within EX31_RS09740 at 150.843 kb on + strand, within EX31_RS09740 at 151.005 kb on + strand, within EX31_RS09740 at 151.007 kb on + strand, within EX31_RS09740 at 151.008 kb on - strand, within EX31_RS09740 at 151.076 kb on + strand, within EX31_RS09740 at 151.086 kb on + strand, within EX31_RS09740 at 151.087 kb on - strand, within EX31_RS09740 at 151.087 kb on - strand, within EX31_RS09740 at 151.087 kb on - strand, within EX31_RS09740 at 151.291 kb on - strand, within EX31_RS09740 at 151.379 kb on + strand, within EX31_RS09740 at 151.437 kb on + strand, within EX31_RS09740 at 151.589 kb on - strand, within EX31_RS09740 at 151.589 kb on - strand, within EX31_RS09740 at 151.589 kb on - strand, within EX31_RS09740 at 151.590 kb on + strand, within EX31_RS09740 at 151.590 kb on + strand, within EX31_RS09740 at 151.590 kb on + strand, within EX31_RS09740 at 151.590 kb on + strand, within EX31_RS09740 at 151.591 kb on - strand, within EX31_RS09740 at 151.655 kb on - strand, within EX31_RS09740 at 151.655 kb on - strand, within EX31_RS09740 at 151.815 kb on + strand, within EX31_RS09740 at 151.816 kb on - strand, within EX31_RS09740 at 151.896 kb on + strand, within EX31_RS09740 at 151.897 kb on - strand, within EX31_RS09740 at 151.897 kb on - strand, within EX31_RS09740 at 151.897 kb on - strand, within EX31_RS09740 at 152.052 kb on + strand, within EX31_RS09740 at 152.052 kb on + strand, within EX31_RS09740 at 152.067 kb on + strand, within EX31_RS09740 at 152.067 kb on + strand, within EX31_RS09740 at 152.067 kb on + strand, within EX31_RS09740 at 152.068 kb on - strand, within EX31_RS09740 at 152.069 kb on + strand, within EX31_RS09740 at 152.069 kb on + strand, within EX31_RS09740 at 152.069 kb on + strand, within EX31_RS09740 at 152.069 kb on + strand, within EX31_RS09740 at 152.069 kb on + strand, within EX31_RS09740 at 152.069 kb on + strand, within EX31_RS09740 at 152.069 kb on + strand, within EX31_RS09740 at 152.070 kb on - strand, within EX31_RS09740 at 152.070 kb on - strand, within EX31_RS09740 at 152.070 kb on - strand, within EX31_RS09740 at 152.070 kb on - strand, within EX31_RS09740 at 152.070 kb on - strand, within EX31_RS09740 at 152.131 kb on - strand, within EX31_RS09740 at 152.229 kb on + strand, within EX31_RS09740 at 152.229 kb on + strand, within EX31_RS09740 at 152.229 kb on + strand, within EX31_RS09740 at 152.230 kb on - strand, within EX31_RS09740 at 152.230 kb on - strand, within EX31_RS09740 at 152.230 kb on - strand, within EX31_RS09740 at 152.230 kb on - strand, within EX31_RS09740 at 152.230 kb on - strand, within EX31_RS09740 at 152.230 kb on - strand, within EX31_RS09740 at 152.264 kb on + strand, within EX31_RS09740 at 152.284 kb on - strand, within EX31_RS09740 at 152.289 kb on + strand, within EX31_RS09740 at 152.290 kb on - strand, within EX31_RS09740 at 152.411 kb on - strand at 152.414 kb on + strand at 152.414 kb on + strand at 152.414 kb on + strand at 152.414 kb on + strand at 152.414 kb on + strand at 152.415 kb on - strand at 152.560 kb on + strand at 152.568 kb on + strand at 152.568 kb on + strand at 152.569 kb on - strand at 152.573 kb on + strand at 152.574 kb on - strand at 152.591 kb on + strand at 152.591 kb on + strand at 152.591 kb on + strand at 152.591 kb on + strand at 152.591 kb on + strand at 152.591 kb on + strand at 152.591 kb on + strand at 152.592 kb on - strand at 152.592 kb on - strand at 152.715 kb on - strand at 152.727 kb on + strand at 152.728 kb on - strand at 152.782 kb on + strand, within EX31_RS09745 at 152.783 kb on - strand, within EX31_RS09745 at 152.920 kb on + strand, within EX31_RS09745 at 152.921 kb on - strand, within EX31_RS09745 at 152.921 kb on - strand, within EX31_RS09745 at 152.949 kb on + strand, within EX31_RS09745 at 152.950 kb on - strand, within EX31_RS09745 at 152.950 kb on - strand, within EX31_RS09745 at 152.950 kb on - strand, within EX31_RS09745 at 152.950 kb on - strand, within EX31_RS09745 at 153.011 kb on + strand, within EX31_RS09745 at 153.051 kb on - strand, within EX31_RS09745 at 153.119 kb on + strand, within EX31_RS09745 at 153.494 kb on - strand, within EX31_RS09745 at 153.516 kb on + strand, within EX31_RS09745 at 153.517 kb on - strand, within EX31_RS09745 at 153.517 kb on - strand, within EX31_RS09745 at 153.517 kb on - strand, within EX31_RS09745 at 153.532 kb on + strand, within EX31_RS09745 at 153.533 kb on - strand, within EX31_RS09745 at 153.534 kb on + strand, within EX31_RS09745 at 153.534 kb on + strand, within EX31_RS09745 at 153.534 kb on + strand, within EX31_RS09745 at 153.534 kb on + strand, within EX31_RS09745 at 153.534 kb on + strand, within EX31_RS09745 at 153.535 kb on - strand, within EX31_RS09745 at 153.535 kb on - strand, within EX31_RS09745 at 153.535 kb on - strand, within EX31_RS09745
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 149,258 + EX31_RS09735 0.30 -0.9 149,258 + EX31_RS09735 0.30 -0.6 149,259 - EX31_RS09735 0.30 +1.0 149,279 + EX31_RS09735 0.32 -0.3 149,329 + EX31_RS09735 0.35 -0.7 149,329 + EX31_RS09735 0.35 +0.4 149,329 + EX31_RS09735 0.35 -0.5 149,329 + EX31_RS09735 0.35 +0.5 149,329 + EX31_RS09735 0.35 -0.9 149,329 + EX31_RS09735 0.35 +0.6 149,330 - EX31_RS09735 0.35 +1.0 149,330 - EX31_RS09735 0.35 +1.4 149,330 - EX31_RS09735 0.35 +0.8 149,330 - EX31_RS09735 0.35 -1.6 149,358 - EX31_RS09735 0.37 +0.4 149,604 + EX31_RS09735 0.55 +0.1 149,604 + EX31_RS09735 0.55 +0.1 149,604 + EX31_RS09735 0.55 +0.2 149,604 + EX31_RS09735 0.55 +2.4 149,604 + EX31_RS09735 0.55 +0.4 149,605 - EX31_RS09735 0.55 +2.0 149,605 - EX31_RS09735 0.55 +0.4 149,605 - EX31_RS09735 0.55 -0.9 149,605 - EX31_RS09735 0.55 +0.6 149,605 - EX31_RS09735 0.55 -2.4 149,607 + EX31_RS09735 0.55 -0.2 149,607 + EX31_RS09735 0.55 +2.0 149,607 + EX31_RS09735 0.55 -0.1 149,616 + EX31_RS09735 0.56 +0.4 149,616 + EX31_RS09735 0.56 +0.6 149,616 + EX31_RS09735 0.56 +0.1 149,617 - EX31_RS09735 0.56 -0.1 149,617 - EX31_RS09735 0.56 +0.4 149,662 - EX31_RS09735 0.60 +0.8 149,720 + EX31_RS09735 0.64 -1.8 149,720 + EX31_RS09735 0.64 -0.4 149,721 - EX31_RS09735 0.64 -3.2 149,813 + EX31_RS09735 0.71 -0.5 149,814 - EX31_RS09735 0.71 +0.7 149,814 - EX31_RS09735 0.71 +0.2 149,814 - EX31_RS09735 0.71 -0.3 149,887 + EX31_RS09735 0.76 -0.6 149,887 + EX31_RS09735 0.76 +1.2 149,888 - EX31_RS09735 0.76 -2.2 150,097 - +2.1 150,097 - -1.9 150,126 + +0.0 150,129 + +1.3 150,129 + +1.2 150,129 + -2.6 150,129 + +0.0 150,130 - +0.2 150,130 - -0.9 150,246 - +0.4 150,320 - -1.6 150,405 - -0.1 150,405 - +1.0 150,405 - +2.0 150,445 + +0.4 150,445 + +0.4 150,445 + +0.7 150,449 + -1.6 150,449 + -0.0 150,449 + +0.3 150,449 + +0.8 150,449 + +0.8 150,449 + +2.0 150,450 - -1.4 150,450 - +0.4 150,450 - +1.0 150,590 + EX31_RS09740 0.15 -1.4 150,594 - EX31_RS09740 0.15 +0.0 150,660 + EX31_RS09740 0.18 +0.2 150,660 + EX31_RS09740 0.18 -2.4 150,683 + EX31_RS09740 0.19 +0.6 150,684 - EX31_RS09740 0.19 +0.4 150,691 - EX31_RS09740 0.19 +2.4 150,843 + EX31_RS09740 0.26 +0.4 151,005 + EX31_RS09740 0.33 +1.7 151,007 + EX31_RS09740 0.33 +1.6 151,008 - EX31_RS09740 0.33 +0.8 151,076 + EX31_RS09740 0.36 -0.3 151,086 + EX31_RS09740 0.36 -0.6 151,087 - EX31_RS09740 0.36 -1.2 151,087 - EX31_RS09740 0.36 -1.6 151,087 - EX31_RS09740 0.36 -1.4 151,291 - EX31_RS09740 0.45 -0.5 151,379 + EX31_RS09740 0.49 +0.4 151,437 + EX31_RS09740 0.51 +1.0 151,589 - EX31_RS09740 0.58 +0.4 151,589 - EX31_RS09740 0.58 -0.6 151,589 - EX31_RS09740 0.58 +0.1 151,590 + EX31_RS09740 0.58 +1.4 151,590 + EX31_RS09740 0.58 -0.2 151,590 + EX31_RS09740 0.58 +0.4 151,590 + EX31_RS09740 0.58 +1.1 151,591 - EX31_RS09740 0.58 -1.2 151,655 - EX31_RS09740 0.61 +2.4 151,655 - EX31_RS09740 0.61 +0.4 151,815 + EX31_RS09740 0.67 -0.6 151,816 - EX31_RS09740 0.68 -0.8 151,896 + EX31_RS09740 0.71 -3.5 151,897 - EX31_RS09740 0.71 -0.6 151,897 - EX31_RS09740 0.71 +0.1 151,897 - EX31_RS09740 0.71 +1.4 152,052 + EX31_RS09740 0.78 +0.4 152,052 + EX31_RS09740 0.78 +0.4 152,067 + EX31_RS09740 0.78 +1.0 152,067 + EX31_RS09740 0.78 +0.1 152,067 + EX31_RS09740 0.78 +0.1 152,068 - EX31_RS09740 0.78 -0.3 152,069 + EX31_RS09740 0.78 +0.6 152,069 + EX31_RS09740 0.78 +0.6 152,069 + EX31_RS09740 0.78 -1.2 152,069 + EX31_RS09740 0.78 +0.9 152,069 + EX31_RS09740 0.78 +1.4 152,069 + EX31_RS09740 0.78 +3.4 152,069 + EX31_RS09740 0.78 -0.3 152,070 - EX31_RS09740 0.78 +1.1 152,070 - EX31_RS09740 0.78 +2.0 152,070 - EX31_RS09740 0.78 +1.0 152,070 - EX31_RS09740 0.78 -2.2 152,070 - EX31_RS09740 0.78 -0.6 152,131 - EX31_RS09740 0.81 +0.8 152,229 + EX31_RS09740 0.85 -0.7 152,229 + EX31_RS09740 0.85 +1.4 152,229 + EX31_RS09740 0.85 -2.4 152,230 - EX31_RS09740 0.85 +0.0 152,230 - EX31_RS09740 0.85 +3.7 152,230 - EX31_RS09740 0.85 +1.4 152,230 - EX31_RS09740 0.85 -1.6 152,230 - EX31_RS09740 0.85 +1.2 152,230 - EX31_RS09740 0.85 -0.9 152,264 + EX31_RS09740 0.87 +0.2 152,284 - EX31_RS09740 0.88 -1.9 152,289 + EX31_RS09740 0.88 -1.3 152,290 - EX31_RS09740 0.88 +0.4 152,411 - +1.0 152,414 + +0.4 152,414 + -1.9 152,414 + -0.8 152,414 + +0.1 152,414 + +0.9 152,415 - -0.3 152,560 + -0.6 152,568 + -0.4 152,568 + -1.2 152,569 - +1.0 152,573 + -3.1 152,574 - -1.0 152,591 + +1.4 152,591 + -0.4 152,591 + +0.4 152,591 + +1.6 152,591 + +1.4 152,591 + -1.0 152,591 + +1.4 152,592 - -0.3 152,592 - -0.0 152,715 - -1.9 152,727 + -0.3 152,728 - -1.2 152,782 + EX31_RS09745 0.12 -3.1 152,783 - EX31_RS09745 0.12 -3.2 152,920 + EX31_RS09745 0.24 +1.4 152,921 - EX31_RS09745 0.24 -2.6 152,921 - EX31_RS09745 0.24 -2.4 152,949 + EX31_RS09745 0.26 -1.9 152,950 - EX31_RS09745 0.26 -2.6 152,950 - EX31_RS09745 0.26 -0.6 152,950 - EX31_RS09745 0.26 -3.5 152,950 - EX31_RS09745 0.26 -1.4 153,011 + EX31_RS09745 0.31 -1.9 153,051 - EX31_RS09745 0.35 -0.6 153,119 + EX31_RS09745 0.40 -2.4 153,494 - EX31_RS09745 0.72 -2.6 153,516 + EX31_RS09745 0.74 -2.3 153,517 - EX31_RS09745 0.74 -0.7 153,517 - EX31_RS09745 0.74 -2.9 153,517 - EX31_RS09745 0.74 -2.2 153,532 + EX31_RS09745 0.75 -1.2 153,533 - EX31_RS09745 0.75 -1.6 153,534 + EX31_RS09745 0.75 -1.2 153,534 + EX31_RS09745 0.75 -1.6 153,534 + EX31_RS09745 0.75 +0.1 153,534 + EX31_RS09745 0.75 -0.6 153,534 + EX31_RS09745 0.75 -0.6 153,535 - EX31_RS09745 0.75 -3.4 153,535 - EX31_RS09745 0.75 -1.6 153,535 - EX31_RS09745 0.75 -2.6
Or see this region's nucleotide sequence