Strain Fitness in Rahnella sp. WP5 around EX31_RS09735

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09730 and EX31_RS09735 are separated by 215 nucleotidesEX31_RS09735 and EX31_RS09740 are separated by 30 nucleotides EX31_RS09730: EX31_RS09730 - sugar ABC transporter substrate-binding protein, at 147,559 to 148,632 _RS09730 EX31_RS09735: EX31_RS09735 - glycoside-pentoside-hexuronide family transporter, at 148,848 to 150,215 _RS09735 EX31_RS09740: EX31_RS09740 - alpha-xylosidase, at 150,246 to 152,570 _RS09740 Position (kb) 148 149 150 151Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 147.881 kb on - strand, within EX31_RS09730at 147.918 kb on + strand, within EX31_RS09730at 148.048 kb on - strand, within EX31_RS09730at 148.106 kb on - strand, within EX31_RS09730at 148.113 kb on + strand, within EX31_RS09730at 148.113 kb on + strand, within EX31_RS09730at 148.113 kb on + strand, within EX31_RS09730at 148.191 kb on + strand, within EX31_RS09730at 148.279 kb on + strand, within EX31_RS09730at 148.282 kb on - strand, within EX31_RS09730at 148.335 kb on - strand, within EX31_RS09730at 148.474 kb on + strand, within EX31_RS09730at 148.475 kb on - strand, within EX31_RS09730at 148.673 kb on + strandat 148.674 kb on - strandat 148.752 kb on - strandat 148.752 kb on - strandat 148.762 kb on - strandat 148.786 kb on - strandat 148.818 kb on - strandat 148.832 kb on + strandat 148.938 kb on + strandat 148.939 kb on - strandat 148.984 kb on - strandat 148.984 kb on - strandat 149.091 kb on + strand, within EX31_RS09735at 149.092 kb on - strand, within EX31_RS09735at 149.139 kb on + strand, within EX31_RS09735at 149.140 kb on - strand, within EX31_RS09735at 149.140 kb on - strand, within EX31_RS09735at 149.140 kb on - strand, within EX31_RS09735at 149.140 kb on - strand, within EX31_RS09735at 149.193 kb on + strand, within EX31_RS09735at 149.193 kb on + strand, within EX31_RS09735at 149.194 kb on - strand, within EX31_RS09735at 149.194 kb on - strand, within EX31_RS09735at 149.194 kb on - strand, within EX31_RS09735at 149.194 kb on - strand, within EX31_RS09735at 149.194 kb on - strand, within EX31_RS09735at 149.194 kb on - strand, within EX31_RS09735at 149.195 kb on + strand, within EX31_RS09735at 149.214 kb on + strand, within EX31_RS09735at 149.214 kb on + strand, within EX31_RS09735at 149.214 kb on + strand, within EX31_RS09735at 149.214 kb on + strand, within EX31_RS09735at 149.215 kb on - strand, within EX31_RS09735at 149.215 kb on - strand, within EX31_RS09735at 149.215 kb on - strand, within EX31_RS09735at 149.215 kb on - strand, within EX31_RS09735at 149.215 kb on - strand, within EX31_RS09735at 149.258 kb on + strand, within EX31_RS09735at 149.258 kb on + strand, within EX31_RS09735at 149.259 kb on - strand, within EX31_RS09735at 149.279 kb on + strand, within EX31_RS09735at 149.329 kb on + strand, within EX31_RS09735at 149.329 kb on + strand, within EX31_RS09735at 149.329 kb on + strand, within EX31_RS09735at 149.329 kb on + strand, within EX31_RS09735at 149.329 kb on + strand, within EX31_RS09735at 149.329 kb on + strand, within EX31_RS09735at 149.330 kb on - strand, within EX31_RS09735at 149.330 kb on - strand, within EX31_RS09735at 149.330 kb on - strand, within EX31_RS09735at 149.330 kb on - strand, within EX31_RS09735at 149.358 kb on - strand, within EX31_RS09735at 149.604 kb on + strand, within EX31_RS09735at 149.604 kb on + strand, within EX31_RS09735at 149.604 kb on + strand, within EX31_RS09735at 149.604 kb on + strand, within EX31_RS09735at 149.604 kb on + strand, within EX31_RS09735at 149.605 kb on - strand, within EX31_RS09735at 149.605 kb on - strand, within EX31_RS09735at 149.605 kb on - strand, within EX31_RS09735at 149.605 kb on - strand, within EX31_RS09735at 149.605 kb on - strand, within EX31_RS09735at 149.607 kb on + strand, within EX31_RS09735at 149.607 kb on + strand, within EX31_RS09735at 149.607 kb on + strand, within EX31_RS09735at 149.616 kb on + strand, within EX31_RS09735at 149.616 kb on + strand, within EX31_RS09735at 149.616 kb on + strand, within EX31_RS09735at 149.617 kb on - strand, within EX31_RS09735at 149.617 kb on - strand, within EX31_RS09735at 149.662 kb on - strand, within EX31_RS09735at 149.720 kb on + strand, within EX31_RS09735at 149.720 kb on + strand, within EX31_RS09735at 149.721 kb on - strand, within EX31_RS09735at 149.813 kb on + strand, within EX31_RS09735at 149.814 kb on - strand, within EX31_RS09735at 149.814 kb on - strand, within EX31_RS09735at 149.814 kb on - strand, within EX31_RS09735at 149.887 kb on + strand, within EX31_RS09735at 149.887 kb on + strand, within EX31_RS09735at 149.888 kb on - strand, within EX31_RS09735at 150.097 kb on - strandat 150.097 kb on - strandat 150.126 kb on + strandat 150.129 kb on + strandat 150.129 kb on + strandat 150.129 kb on + strandat 150.129 kb on + strandat 150.130 kb on - strandat 150.130 kb on - strandat 150.246 kb on - strandat 150.320 kb on - strandat 150.405 kb on - strandat 150.405 kb on - strandat 150.405 kb on - strandat 150.445 kb on + strandat 150.445 kb on + strandat 150.445 kb on + strandat 150.449 kb on + strandat 150.449 kb on + strandat 150.449 kb on + strandat 150.449 kb on + strandat 150.449 kb on + strandat 150.449 kb on + strandat 150.450 kb on - strandat 150.450 kb on - strandat 150.450 kb on - strandat 150.590 kb on + strand, within EX31_RS09740at 150.594 kb on - strand, within EX31_RS09740at 150.660 kb on + strand, within EX31_RS09740at 150.660 kb on + strand, within EX31_RS09740at 150.683 kb on + strand, within EX31_RS09740at 150.684 kb on - strand, within EX31_RS09740at 150.691 kb on - strand, within EX31_RS09740at 150.843 kb on + strand, within EX31_RS09740at 151.005 kb on + strand, within EX31_RS09740at 151.007 kb on + strand, within EX31_RS09740at 151.008 kb on - strand, within EX31_RS09740at 151.076 kb on + strand, within EX31_RS09740at 151.086 kb on + strand, within EX31_RS09740at 151.087 kb on - strand, within EX31_RS09740at 151.087 kb on - strand, within EX31_RS09740at 151.087 kb on - strand, within EX31_RS09740

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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147,881 - EX31_RS09730 0.30 +0.8
147,918 + EX31_RS09730 0.33 +0.7
148,048 - EX31_RS09730 0.46 +1.4
148,106 - EX31_RS09730 0.51 +0.4
148,113 + EX31_RS09730 0.52 +0.6
148,113 + EX31_RS09730 0.52 +0.2
148,113 + EX31_RS09730 0.52 +0.4
148,191 + EX31_RS09730 0.59 +0.1
148,279 + EX31_RS09730 0.67 +0.4
148,282 - EX31_RS09730 0.67 +1.0
148,335 - EX31_RS09730 0.72 +0.1
148,474 + EX31_RS09730 0.85 -0.5
148,475 - EX31_RS09730 0.85 -1.5
148,673 + -0.6
148,674 - +1.4
148,752 - -0.9
148,752 - -0.3
148,762 - -1.9
148,786 - +0.8
148,818 - +1.4
148,832 + +1.4
148,938 + -0.9
148,939 - +0.8
148,984 - -1.9
148,984 - -0.3
149,091 + EX31_RS09735 0.18 -2.8
149,092 - EX31_RS09735 0.18 +2.4
149,139 + EX31_RS09735 0.21 -0.4
149,140 - EX31_RS09735 0.21 +0.4
149,140 - EX31_RS09735 0.21 +0.5
149,140 - EX31_RS09735 0.21 -2.2
149,140 - EX31_RS09735 0.21 +0.6
149,193 + EX31_RS09735 0.25 +0.4
149,193 + EX31_RS09735 0.25 -0.6
149,194 - EX31_RS09735 0.25 +0.4
149,194 - EX31_RS09735 0.25 +1.0
149,194 - EX31_RS09735 0.25 -0.6
149,194 - EX31_RS09735 0.25 -0.2
149,194 - EX31_RS09735 0.25 +1.2
149,194 - EX31_RS09735 0.25 +1.4
149,195 + EX31_RS09735 0.25 -1.2
149,214 + EX31_RS09735 0.27 +1.7
149,214 + EX31_RS09735 0.27 -0.1
149,214 + EX31_RS09735 0.27 +0.8
149,214 + EX31_RS09735 0.27 -0.6
149,215 - EX31_RS09735 0.27 -1.8
149,215 - EX31_RS09735 0.27 -1.6
149,215 - EX31_RS09735 0.27 -1.2
149,215 - EX31_RS09735 0.27 -1.7
149,215 - EX31_RS09735 0.27 +0.2
149,258 + EX31_RS09735 0.30 -0.9
149,258 + EX31_RS09735 0.30 -0.6
149,259 - EX31_RS09735 0.30 +1.0
149,279 + EX31_RS09735 0.32 -0.3
149,329 + EX31_RS09735 0.35 -0.7
149,329 + EX31_RS09735 0.35 +0.4
149,329 + EX31_RS09735 0.35 -0.5
149,329 + EX31_RS09735 0.35 +0.5
149,329 + EX31_RS09735 0.35 -0.9
149,329 + EX31_RS09735 0.35 +0.6
149,330 - EX31_RS09735 0.35 +1.0
149,330 - EX31_RS09735 0.35 +1.4
149,330 - EX31_RS09735 0.35 +0.8
149,330 - EX31_RS09735 0.35 -1.6
149,358 - EX31_RS09735 0.37 +0.4
149,604 + EX31_RS09735 0.55 +0.1
149,604 + EX31_RS09735 0.55 +0.1
149,604 + EX31_RS09735 0.55 +0.2
149,604 + EX31_RS09735 0.55 +2.4
149,604 + EX31_RS09735 0.55 +0.4
149,605 - EX31_RS09735 0.55 +2.0
149,605 - EX31_RS09735 0.55 +0.4
149,605 - EX31_RS09735 0.55 -0.9
149,605 - EX31_RS09735 0.55 +0.6
149,605 - EX31_RS09735 0.55 -2.4
149,607 + EX31_RS09735 0.55 -0.2
149,607 + EX31_RS09735 0.55 +2.0
149,607 + EX31_RS09735 0.55 -0.1
149,616 + EX31_RS09735 0.56 +0.4
149,616 + EX31_RS09735 0.56 +0.6
149,616 + EX31_RS09735 0.56 +0.1
149,617 - EX31_RS09735 0.56 -0.1
149,617 - EX31_RS09735 0.56 +0.4
149,662 - EX31_RS09735 0.60 +0.8
149,720 + EX31_RS09735 0.64 -1.8
149,720 + EX31_RS09735 0.64 -0.4
149,721 - EX31_RS09735 0.64 -3.2
149,813 + EX31_RS09735 0.71 -0.5
149,814 - EX31_RS09735 0.71 +0.7
149,814 - EX31_RS09735 0.71 +0.2
149,814 - EX31_RS09735 0.71 -0.3
149,887 + EX31_RS09735 0.76 -0.6
149,887 + EX31_RS09735 0.76 +1.2
149,888 - EX31_RS09735 0.76 -2.2
150,097 - +2.1
150,097 - -1.9
150,126 + +0.0
150,129 + +1.3
150,129 + +1.2
150,129 + -2.6
150,129 + +0.0
150,130 - +0.2
150,130 - -0.9
150,246 - +0.4
150,320 - -1.6
150,405 - -0.1
150,405 - +1.0
150,405 - +2.0
150,445 + +0.4
150,445 + +0.4
150,445 + +0.7
150,449 + -1.6
150,449 + -0.0
150,449 + +0.3
150,449 + +0.8
150,449 + +0.8
150,449 + +2.0
150,450 - -1.4
150,450 - +0.4
150,450 - +1.0
150,590 + EX31_RS09740 0.15 -1.4
150,594 - EX31_RS09740 0.15 +0.0
150,660 + EX31_RS09740 0.18 +0.2
150,660 + EX31_RS09740 0.18 -2.4
150,683 + EX31_RS09740 0.19 +0.6
150,684 - EX31_RS09740 0.19 +0.4
150,691 - EX31_RS09740 0.19 +2.4
150,843 + EX31_RS09740 0.26 +0.4
151,005 + EX31_RS09740 0.33 +1.7
151,007 + EX31_RS09740 0.33 +1.6
151,008 - EX31_RS09740 0.33 +0.8
151,076 + EX31_RS09740 0.36 -0.3
151,086 + EX31_RS09740 0.36 -0.6
151,087 - EX31_RS09740 0.36 -1.2
151,087 - EX31_RS09740 0.36 -1.6
151,087 - EX31_RS09740 0.36 -1.4

Or see this region's nucleotide sequence