Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08980 and EX31_RS08985 are separated by 128 nucleotides EX31_RS08985 and EX31_RS08990 are separated by 379 nucleotides EX31_RS08990 and EX31_RS08995 overlap by 8 nucleotides
EX31_RS08980: EX31_RS08980 - transcriptional regulator, at 309,684 to 310,259
_RS08980
EX31_RS08985: EX31_RS08985 - tRNA-Phe, at 310,388 to 310,463
_RS08985
EX31_RS08990: EX31_RS08990 - mandelate racemase/muconate lactonizing enzyme family protein, at 310,843 to 312,003
_RS08990
EX31_RS08995: EX31_RS08995 - MFS transporter, at 311,996 to 313,312
_RS08995
Position (kb) 310
311
312
313 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 309.866 kb on + strand, within EX31_RS08980 at 309.930 kb on + strand, within EX31_RS08980 at 309.932 kb on + strand, within EX31_RS08980 at 309.932 kb on + strand, within EX31_RS08980 at 309.932 kb on + strand, within EX31_RS08980 at 309.933 kb on - strand, within EX31_RS08980 at 310.059 kb on + strand, within EX31_RS08980 at 310.065 kb on + strand, within EX31_RS08980 at 310.065 kb on + strand, within EX31_RS08980 at 310.065 kb on + strand, within EX31_RS08980 at 310.065 kb on + strand, within EX31_RS08980 at 310.066 kb on - strand, within EX31_RS08980 at 310.066 kb on - strand, within EX31_RS08980 at 310.066 kb on - strand, within EX31_RS08980 at 310.325 kb on + strand at 310.325 kb on + strand at 310.326 kb on - strand at 310.326 kb on - strand at 310.326 kb on - strand at 310.326 kb on - strand at 310.326 kb on - strand at 310.329 kb on + strand at 310.329 kb on + strand at 310.330 kb on - strand at 310.330 kb on - strand at 310.334 kb on + strand at 310.334 kb on + strand at 310.334 kb on + strand at 310.334 kb on + strand at 310.335 kb on - strand at 310.335 kb on - strand at 310.339 kb on - strand at 310.464 kb on + strand at 310.464 kb on + strand at 310.464 kb on + strand at 310.464 kb on + strand at 310.464 kb on + strand at 310.464 kb on + strand at 310.464 kb on + strand at 310.482 kb on + strand at 310.483 kb on - strand at 310.483 kb on - strand at 310.508 kb on + strand at 310.603 kb on - strand at 310.622 kb on + strand at 310.622 kb on + strand at 310.622 kb on + strand at 310.622 kb on + strand at 310.623 kb on - strand at 310.623 kb on - strand at 310.623 kb on - strand at 310.623 kb on - strand at 310.623 kb on - strand at 310.623 kb on - strand at 310.626 kb on + strand at 310.626 kb on + strand at 310.626 kb on + strand at 310.626 kb on + strand at 310.627 kb on - strand at 310.627 kb on - strand at 310.627 kb on - strand at 310.641 kb on - strand at 310.662 kb on - strand at 310.668 kb on + strand at 310.668 kb on + strand at 310.669 kb on - strand at 310.669 kb on - strand at 310.669 kb on - strand at 310.669 kb on - strand at 310.669 kb on - strand at 310.669 kb on - strand at 310.669 kb on - strand at 310.672 kb on + strand at 310.672 kb on + strand at 310.672 kb on + strand at 310.672 kb on + strand at 310.672 kb on + strand at 310.672 kb on + strand at 310.672 kb on + strand at 310.672 kb on + strand at 310.672 kb on + strand at 310.672 kb on + strand at 310.673 kb on - strand at 310.673 kb on - strand at 310.673 kb on - strand at 310.673 kb on - strand at 310.673 kb on - strand at 310.673 kb on - strand at 310.673 kb on - strand at 310.673 kb on - strand at 310.673 kb on - strand at 310.673 kb on - strand at 310.673 kb on - strand at 310.673 kb on - strand at 310.673 kb on - strand at 310.673 kb on - strand at 310.673 kb on - strand at 310.676 kb on + strand at 310.741 kb on + strand at 310.742 kb on - strand at 310.742 kb on - strand at 310.772 kb on + strand at 310.772 kb on + strand at 310.773 kb on - strand at 310.785 kb on + strand at 310.786 kb on - strand at 310.807 kb on - strand at 310.824 kb on + strand at 310.824 kb on + strand at 310.825 kb on - strand at 310.825 kb on - strand at 310.826 kb on + strand at 310.826 kb on + strand at 310.826 kb on + strand at 310.827 kb on - strand at 310.827 kb on - strand at 310.827 kb on - strand at 310.827 kb on - strand at 310.865 kb on + strand at 310.865 kb on + strand at 310.902 kb on + strand at 310.903 kb on - strand at 310.916 kb on + strand at 310.917 kb on - strand at 310.930 kb on + strand at 310.930 kb on + strand at 310.930 kb on + strand at 310.931 kb on - strand at 310.931 kb on - strand at 310.931 kb on - strand at 310.931 kb on - strand at 310.931 kb on - strand at 310.931 kb on - strand at 310.933 kb on - strand at 310.933 kb on - strand at 310.933 kb on - strand at 310.933 kb on - strand at 310.933 kb on - strand at 310.970 kb on + strand, within EX31_RS08990 at 310.971 kb on - strand, within EX31_RS08990 at 310.971 kb on - strand, within EX31_RS08990 at 310.971 kb on - strand, within EX31_RS08990 at 310.971 kb on - strand, within EX31_RS08990 at 311.000 kb on + strand, within EX31_RS08990 at 311.000 kb on + strand, within EX31_RS08990 at 311.066 kb on + strand, within EX31_RS08990 at 311.067 kb on - strand, within EX31_RS08990 at 311.067 kb on - strand, within EX31_RS08990 at 311.067 kb on - strand, within EX31_RS08990 at 311.067 kb on - strand, within EX31_RS08990 at 311.306 kb on - strand, within EX31_RS08990 at 311.346 kb on + strand, within EX31_RS08990 at 311.347 kb on - strand, within EX31_RS08990 at 311.373 kb on - strand, within EX31_RS08990 at 311.420 kb on + strand, within EX31_RS08990 at 311.420 kb on + strand, within EX31_RS08990 at 311.421 kb on - strand, within EX31_RS08990 at 311.421 kb on - strand, within EX31_RS08990 at 311.501 kb on + strand, within EX31_RS08990 at 311.502 kb on - strand, within EX31_RS08990 at 311.764 kb on + strand, within EX31_RS08990 at 311.765 kb on - strand, within EX31_RS08990 at 311.765 kb on - strand, within EX31_RS08990 at 311.765 kb on - strand, within EX31_RS08990 at 311.767 kb on + strand, within EX31_RS08990 at 311.768 kb on - strand, within EX31_RS08990 at 311.768 kb on - strand, within EX31_RS08990 at 311.839 kb on + strand, within EX31_RS08990 at 311.839 kb on + strand, within EX31_RS08990 at 311.840 kb on - strand, within EX31_RS08990 at 311.840 kb on - strand, within EX31_RS08990 at 311.863 kb on + strand, within EX31_RS08990 at 311.889 kb on + strand at 311.889 kb on + strand at 311.889 kb on + strand at 311.889 kb on + strand at 311.950 kb on + strand at 311.950 kb on + strand at 311.950 kb on + strand at 311.950 kb on + strand at 311.951 kb on - strand at 312.001 kb on + strand at 312.001 kb on + strand at 312.001 kb on + strand at 312.001 kb on + strand at 312.002 kb on - strand at 312.002 kb on - strand at 312.002 kb on - strand at 312.011 kb on + strand at 312.059 kb on + strand at 312.059 kb on + strand at 312.059 kb on + strand at 312.059 kb on + strand at 312.059 kb on + strand at 312.060 kb on - strand at 312.060 kb on - strand at 312.181 kb on + strand, within EX31_RS08995 at 312.252 kb on + strand, within EX31_RS08995 at 312.252 kb on + strand, within EX31_RS08995 at 312.294 kb on + strand, within EX31_RS08995 at 312.294 kb on + strand, within EX31_RS08995 at 312.294 kb on + strand, within EX31_RS08995 at 312.295 kb on - strand, within EX31_RS08995 at 312.668 kb on + strand, within EX31_RS08995 at 312.668 kb on + strand, within EX31_RS08995 at 312.668 kb on + strand, within EX31_RS08995 at 312.668 kb on + strand, within EX31_RS08995 at 312.669 kb on - strand, within EX31_RS08995 at 312.671 kb on + strand, within EX31_RS08995 at 312.671 kb on + strand, within EX31_RS08995 at 312.671 kb on + strand, within EX31_RS08995 at 312.671 kb on + strand, within EX31_RS08995 at 312.671 kb on + strand, within EX31_RS08995 at 312.671 kb on + strand, within EX31_RS08995 at 312.671 kb on + strand, within EX31_RS08995 at 312.672 kb on - strand, within EX31_RS08995 at 312.672 kb on - strand, within EX31_RS08995 at 312.672 kb on - strand, within EX31_RS08995 at 312.672 kb on - strand, within EX31_RS08995 at 312.675 kb on + strand, within EX31_RS08995 at 312.675 kb on + strand, within EX31_RS08995 at 312.676 kb on - strand, within EX31_RS08995 at 312.725 kb on + strand, within EX31_RS08995 at 312.725 kb on + strand, within EX31_RS08995 at 312.725 kb on + strand, within EX31_RS08995 at 312.726 kb on - strand, within EX31_RS08995 at 312.726 kb on - strand, within EX31_RS08995 at 312.726 kb on - strand, within EX31_RS08995 at 312.726 kb on - strand, within EX31_RS08995 at 312.726 kb on - strand, within EX31_RS08995 at 312.726 kb on - strand, within EX31_RS08995 at 312.726 kb on - strand, within EX31_RS08995 at 312.726 kb on - strand, within EX31_RS08995 at 312.726 kb on - strand, within EX31_RS08995 at 312.726 kb on - strand, within EX31_RS08995 at 312.734 kb on + strand, within EX31_RS08995 at 312.734 kb on + strand, within EX31_RS08995 at 312.734 kb on + strand, within EX31_RS08995 at 312.734 kb on + strand, within EX31_RS08995 at 312.734 kb on + strand, within EX31_RS08995 at 312.735 kb on - strand, within EX31_RS08995 at 312.735 kb on - strand, within EX31_RS08995 at 312.735 kb on - strand, within EX31_RS08995 at 312.735 kb on - strand, within EX31_RS08995 at 312.761 kb on + strand, within EX31_RS08995 at 312.762 kb on - strand, within EX31_RS08995 at 312.762 kb on - strand, within EX31_RS08995 at 312.762 kb on - strand, within EX31_RS08995 at 312.762 kb on - strand, within EX31_RS08995 at 312.790 kb on + strand, within EX31_RS08995 at 312.790 kb on + strand, within EX31_RS08995 at 312.791 kb on - strand, within EX31_RS08995 at 312.791 kb on - strand, within EX31_RS08995 at 312.869 kb on - strand, within EX31_RS08995 at 312.876 kb on - strand, within EX31_RS08995 at 312.890 kb on - strand, within EX31_RS08995 at 312.907 kb on + strand, within EX31_RS08995 at 312.907 kb on + strand, within EX31_RS08995 at 312.908 kb on - strand, within EX31_RS08995 at 312.933 kb on + strand, within EX31_RS08995 at 312.934 kb on - strand, within EX31_RS08995 at 312.934 kb on - strand, within EX31_RS08995 at 312.934 kb on - strand, within EX31_RS08995 at 312.965 kb on + strand, within EX31_RS08995
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 309,866 + EX31_RS08980 0.32 -1.2 309,930 + EX31_RS08980 0.43 +0.5 309,932 + EX31_RS08980 0.43 -0.1 309,932 + EX31_RS08980 0.43 -0.5 309,932 + EX31_RS08980 0.43 +0.6 309,933 - EX31_RS08980 0.43 -0.0 310,059 + EX31_RS08980 0.65 +0.6 310,065 + EX31_RS08980 0.66 +0.5 310,065 + EX31_RS08980 0.66 -2.9 310,065 + EX31_RS08980 0.66 +1.1 310,065 + EX31_RS08980 0.66 +0.6 310,066 - EX31_RS08980 0.66 +0.6 310,066 - EX31_RS08980 0.66 +0.3 310,066 - EX31_RS08980 0.66 +0.1 310,325 + -1.4 310,325 + -0.5 310,326 - -1.5 310,326 - -0.5 310,326 - +0.4 310,326 - +0.9 310,326 - +0.3 310,329 + -0.4 310,329 + -0.1 310,330 - -0.8 310,330 - +1.2 310,334 + +0.6 310,334 + -0.4 310,334 + +0.4 310,334 + +0.3 310,335 - -0.8 310,335 - -0.9 310,339 - -0.9 310,464 + +1.1 310,464 + +0.0 310,464 + -0.1 310,464 + -0.4 310,464 + +0.6 310,464 + -0.7 310,464 + -0.7 310,482 + -0.9 310,483 - +0.3 310,483 - +1.3 310,508 + +1.1 310,603 - -1.7 310,622 + -0.9 310,622 + +1.1 310,622 + -0.3 310,622 + +0.9 310,623 - +2.2 310,623 - -2.6 310,623 - -0.3 310,623 - +0.6 310,623 - +0.1 310,623 - -0.6 310,626 + +0.0 310,626 + -2.8 310,626 + +0.6 310,626 + +0.3 310,627 - +0.4 310,627 - -1.0 310,627 - +2.0 310,641 - -2.1 310,662 - +0.7 310,668 + +0.2 310,668 + -1.4 310,669 - +0.1 310,669 - +0.0 310,669 - -0.4 310,669 - -0.4 310,669 - -0.3 310,669 - +0.9 310,669 - -0.7 310,672 + -0.4 310,672 + -0.3 310,672 + -0.4 310,672 + -0.8 310,672 + -0.6 310,672 + -1.2 310,672 + +0.5 310,672 + -0.7 310,672 + +0.1 310,672 + +1.0 310,673 - -0.4 310,673 - -0.7 310,673 - -0.4 310,673 - -0.3 310,673 - +1.6 310,673 - -0.4 310,673 - +0.3 310,673 - +0.1 310,673 - +0.7 310,673 - -0.8 310,673 - -0.1 310,673 - +0.7 310,673 - +0.4 310,673 - -0.5 310,673 - +1.3 310,676 + -2.0 310,741 + +0.8 310,742 - +0.5 310,742 - -0.1 310,772 + -0.6 310,772 + +0.8 310,773 - -0.0 310,785 + +1.7 310,786 - -0.4 310,807 - -0.4 310,824 + +1.9 310,824 + -1.1 310,825 - +0.2 310,825 - +0.7 310,826 + +0.5 310,826 + -1.0 310,826 + -0.8 310,827 - -0.1 310,827 - -0.6 310,827 - -0.1 310,827 - +0.1 310,865 + -0.0 310,865 + +0.1 310,902 + -0.4 310,903 - +0.5 310,916 + -0.3 310,917 - -0.2 310,930 + -1.7 310,930 + -1.6 310,930 + -0.5 310,931 - -0.4 310,931 - +1.6 310,931 - -0.2 310,931 - +1.9 310,931 - +1.5 310,931 - -1.2 310,933 - -0.2 310,933 - +1.2 310,933 - +0.2 310,933 - -0.9 310,933 - +0.2 310,970 + EX31_RS08990 0.11 +1.1 310,971 - EX31_RS08990 0.11 -0.4 310,971 - EX31_RS08990 0.11 -0.7 310,971 - EX31_RS08990 0.11 -0.0 310,971 - EX31_RS08990 0.11 +0.6 311,000 + EX31_RS08990 0.14 +0.7 311,000 + EX31_RS08990 0.14 +0.2 311,066 + EX31_RS08990 0.19 -0.9 311,067 - EX31_RS08990 0.19 +0.3 311,067 - EX31_RS08990 0.19 +1.1 311,067 - EX31_RS08990 0.19 -0.6 311,067 - EX31_RS08990 0.19 +0.7 311,306 - EX31_RS08990 0.40 -1.3 311,346 + EX31_RS08990 0.43 +1.3 311,347 - EX31_RS08990 0.43 +0.9 311,373 - EX31_RS08990 0.46 +0.1 311,420 + EX31_RS08990 0.50 +0.1 311,420 + EX31_RS08990 0.50 +0.2 311,421 - EX31_RS08990 0.50 +0.1 311,421 - EX31_RS08990 0.50 +0.3 311,501 + EX31_RS08990 0.57 -0.9 311,502 - EX31_RS08990 0.57 -0.5 311,764 + EX31_RS08990 0.79 -1.1 311,765 - EX31_RS08990 0.79 -0.2 311,765 - EX31_RS08990 0.79 +0.5 311,765 - EX31_RS08990 0.79 -0.1 311,767 + EX31_RS08990 0.80 -0.6 311,768 - EX31_RS08990 0.80 -1.4 311,768 - EX31_RS08990 0.80 -0.4 311,839 + EX31_RS08990 0.86 +0.2 311,839 + EX31_RS08990 0.86 -0.1 311,840 - EX31_RS08990 0.86 -0.0 311,840 - EX31_RS08990 0.86 -0.0 311,863 + EX31_RS08990 0.88 +0.3 311,889 + -1.8 311,889 + -0.5 311,889 + +0.3 311,889 + +0.0 311,950 + -0.8 311,950 + -1.2 311,950 + +1.5 311,950 + +1.7 311,951 - +0.7 312,001 + +0.0 312,001 + +0.1 312,001 + +0.9 312,001 + +0.2 312,002 - -0.6 312,002 - -0.3 312,002 - +0.5 312,011 + -1.0 312,059 + -0.2 312,059 + +0.4 312,059 + -0.2 312,059 + -0.9 312,059 + -0.4 312,060 - +0.1 312,060 - +0.7 312,181 + EX31_RS08995 0.14 -0.7 312,252 + EX31_RS08995 0.19 +2.1 312,252 + EX31_RS08995 0.19 -0.3 312,294 + EX31_RS08995 0.23 -0.3 312,294 + EX31_RS08995 0.23 +0.2 312,294 + EX31_RS08995 0.23 -0.0 312,295 - EX31_RS08995 0.23 +0.1 312,668 + EX31_RS08995 0.51 -0.3 312,668 + EX31_RS08995 0.51 +1.1 312,668 + EX31_RS08995 0.51 -0.7 312,668 + EX31_RS08995 0.51 -1.4 312,669 - EX31_RS08995 0.51 -2.0 312,671 + EX31_RS08995 0.51 -0.2 312,671 + EX31_RS08995 0.51 +2.1 312,671 + EX31_RS08995 0.51 -0.8 312,671 + EX31_RS08995 0.51 +0.0 312,671 + EX31_RS08995 0.51 +0.1 312,671 + EX31_RS08995 0.51 +0.2 312,671 + EX31_RS08995 0.51 +1.2 312,672 - EX31_RS08995 0.51 +0.1 312,672 - EX31_RS08995 0.51 -0.1 312,672 - EX31_RS08995 0.51 -0.4 312,672 - EX31_RS08995 0.51 -0.9 312,675 + EX31_RS08995 0.52 +1.1 312,675 + EX31_RS08995 0.52 -0.4 312,676 - EX31_RS08995 0.52 +0.9 312,725 + EX31_RS08995 0.55 -1.3 312,725 + EX31_RS08995 0.55 +0.1 312,725 + EX31_RS08995 0.55 -1.2 312,726 - EX31_RS08995 0.55 +1.7 312,726 - EX31_RS08995 0.55 +1.5 312,726 - EX31_RS08995 0.55 -0.3 312,726 - EX31_RS08995 0.55 -0.4 312,726 - EX31_RS08995 0.55 +0.2 312,726 - EX31_RS08995 0.55 -1.5 312,726 - EX31_RS08995 0.55 +0.6 312,726 - EX31_RS08995 0.55 +0.0 312,726 - EX31_RS08995 0.55 +0.5 312,726 - EX31_RS08995 0.55 -0.2 312,734 + EX31_RS08995 0.56 +0.1 312,734 + EX31_RS08995 0.56 +0.6 312,734 + EX31_RS08995 0.56 +0.1 312,734 + EX31_RS08995 0.56 +0.4 312,734 + EX31_RS08995 0.56 +1.1 312,735 - EX31_RS08995 0.56 +3.6 312,735 - EX31_RS08995 0.56 +0.0 312,735 - EX31_RS08995 0.56 -0.0 312,735 - EX31_RS08995 0.56 -2.0 312,761 + EX31_RS08995 0.58 -1.1 312,762 - EX31_RS08995 0.58 +0.2 312,762 - EX31_RS08995 0.58 -0.6 312,762 - EX31_RS08995 0.58 +1.5 312,762 - EX31_RS08995 0.58 +1.3 312,790 + EX31_RS08995 0.60 -0.4 312,790 + EX31_RS08995 0.60 -1.6 312,791 - EX31_RS08995 0.60 -0.4 312,791 - EX31_RS08995 0.60 +0.2 312,869 - EX31_RS08995 0.66 -0.4 312,876 - EX31_RS08995 0.67 +0.4 312,890 - EX31_RS08995 0.68 -0.5 312,907 + EX31_RS08995 0.69 +0.5 312,907 + EX31_RS08995 0.69 -0.2 312,908 - EX31_RS08995 0.69 -0.2 312,933 + EX31_RS08995 0.71 +1.8 312,934 - EX31_RS08995 0.71 +1.1 312,934 - EX31_RS08995 0.71 -0.4 312,934 - EX31_RS08995 0.71 -0.2 312,965 + EX31_RS08995 0.74 +0.1
Or see this region's nucleotide sequence