Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07830 and EX31_RS07835 are separated by 260 nucleotides EX31_RS07835 and EX31_RS07840 overlap by 11 nucleotides EX31_RS07840 and EX31_RS07845 overlap by 23 nucleotides
EX31_RS07830: EX31_RS07830 - murein hydrolase activator NlpD, at 49,581 to 50,585
_RS07830
EX31_RS07835: EX31_RS07835 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 50,846 to 51,472
_RS07835
EX31_RS07840: EX31_RS07840 - 5'/3'-nucleotidase SurE, at 51,462 to 52,229
_RS07840
EX31_RS07845: EX31_RS07845 - tRNA pseudouridine(13) synthase TruD, at 52,207 to 53,256
_RS07845
Position (kb) 51
52
53 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 50.463 kb on - strand, within EX31_RS07830 at 50.550 kb on - strand at 50.563 kb on - strand at 50.563 kb on - strand at 50.603 kb on + strand at 50.604 kb on - strand at 50.604 kb on - strand at 50.604 kb on - strand at 50.750 kb on + strand at 50.751 kb on - strand at 50.761 kb on - strand at 50.761 kb on - strand at 50.775 kb on + strand at 50.775 kb on + strand at 50.785 kb on + strand at 50.785 kb on + strand at 50.785 kb on + strand at 50.785 kb on + strand at 50.785 kb on + strand at 50.786 kb on - strand at 50.786 kb on - strand at 50.786 kb on - strand at 50.786 kb on - strand at 50.786 kb on - strand at 50.786 kb on - strand at 50.786 kb on - strand at 50.786 kb on - strand at 50.787 kb on + strand at 50.787 kb on + strand at 50.787 kb on + strand at 50.787 kb on + strand at 50.787 kb on + strand at 50.787 kb on + strand at 50.787 kb on + strand at 50.787 kb on + strand at 50.787 kb on + strand at 50.787 kb on + strand at 50.787 kb on + strand at 50.787 kb on + strand at 50.787 kb on + strand at 50.788 kb on - strand at 50.788 kb on - strand at 50.788 kb on - strand at 50.788 kb on - strand at 50.788 kb on - strand at 50.788 kb on - strand at 50.788 kb on - strand at 50.788 kb on - strand at 50.788 kb on - strand at 50.788 kb on - strand at 50.788 kb on - strand at 50.788 kb on - strand at 50.788 kb on - strand at 50.788 kb on - strand at 50.788 kb on - strand at 50.797 kb on - strand at 50.797 kb on - strand at 50.797 kb on - strand at 50.801 kb on - strand at 50.815 kb on + strand at 50.836 kb on - strand at 50.893 kb on + strand at 50.969 kb on + strand, within EX31_RS07835 at 50.973 kb on - strand, within EX31_RS07835 at 50.973 kb on - strand, within EX31_RS07835 at 51.000 kb on - strand, within EX31_RS07835 at 51.012 kb on - strand, within EX31_RS07835 at 51.038 kb on - strand, within EX31_RS07835 at 51.038 kb on - strand, within EX31_RS07835 at 51.103 kb on + strand, within EX31_RS07835 at 51.286 kb on + strand, within EX31_RS07835 at 51.286 kb on + strand, within EX31_RS07835 at 51.286 kb on + strand, within EX31_RS07835 at 51.287 kb on - strand, within EX31_RS07835 at 51.287 kb on - strand, within EX31_RS07835 at 51.288 kb on + strand, within EX31_RS07835 at 51.288 kb on + strand, within EX31_RS07835 at 51.289 kb on - strand, within EX31_RS07835 at 51.289 kb on - strand, within EX31_RS07835 at 51.289 kb on - strand, within EX31_RS07835 at 51.289 kb on - strand, within EX31_RS07835 at 51.289 kb on - strand, within EX31_RS07835 at 51.320 kb on - strand, within EX31_RS07835 at 51.346 kb on + strand, within EX31_RS07835 at 51.392 kb on + strand, within EX31_RS07835 at 51.392 kb on + strand, within EX31_RS07835 at 51.392 kb on + strand, within EX31_RS07835 at 51.453 kb on + strand at 51.453 kb on + strand at 51.453 kb on + strand at 51.453 kb on + strand at 51.453 kb on + strand at 51.453 kb on + strand at 51.454 kb on - strand at 51.454 kb on - strand at 51.454 kb on - strand at 51.454 kb on - strand at 51.464 kb on - strand at 51.526 kb on + strand at 51.527 kb on - strand at 51.565 kb on + strand, within EX31_RS07840 at 51.565 kb on + strand, within EX31_RS07840 at 51.566 kb on - strand, within EX31_RS07840 at 51.566 kb on - strand, within EX31_RS07840 at 51.566 kb on - strand, within EX31_RS07840 at 51.566 kb on - strand, within EX31_RS07840 at 51.566 kb on - strand, within EX31_RS07840 at 51.594 kb on - strand, within EX31_RS07840 at 51.594 kb on - strand, within EX31_RS07840 at 51.637 kb on + strand, within EX31_RS07840 at 51.637 kb on + strand, within EX31_RS07840 at 51.638 kb on - strand, within EX31_RS07840 at 51.638 kb on - strand, within EX31_RS07840 at 51.672 kb on + strand, within EX31_RS07840 at 51.672 kb on + strand, within EX31_RS07840 at 51.672 kb on + strand, within EX31_RS07840 at 51.673 kb on - strand, within EX31_RS07840 at 51.673 kb on - strand, within EX31_RS07840 at 51.673 kb on - strand, within EX31_RS07840 at 51.673 kb on - strand, within EX31_RS07840 at 51.752 kb on + strand, within EX31_RS07840 at 51.752 kb on + strand, within EX31_RS07840 at 51.752 kb on + strand, within EX31_RS07840 at 51.753 kb on - strand, within EX31_RS07840 at 51.753 kb on - strand, within EX31_RS07840 at 51.753 kb on - strand, within EX31_RS07840 at 51.753 kb on - strand, within EX31_RS07840 at 51.756 kb on - strand, within EX31_RS07840 at 51.756 kb on - strand, within EX31_RS07840 at 51.835 kb on + strand, within EX31_RS07840 at 51.836 kb on - strand, within EX31_RS07840 at 51.836 kb on - strand, within EX31_RS07840 at 51.919 kb on + strand, within EX31_RS07840 at 51.919 kb on + strand, within EX31_RS07840 at 51.919 kb on + strand, within EX31_RS07840 at 51.920 kb on - strand, within EX31_RS07840 at 51.920 kb on - strand, within EX31_RS07840 at 51.969 kb on + strand, within EX31_RS07840 at 51.969 kb on + strand, within EX31_RS07840 at 51.969 kb on + strand, within EX31_RS07840 at 51.969 kb on + strand, within EX31_RS07840 at 51.969 kb on + strand, within EX31_RS07840 at 51.969 kb on + strand, within EX31_RS07840 at 51.969 kb on + strand, within EX31_RS07840 at 51.970 kb on - strand, within EX31_RS07840 at 51.970 kb on - strand, within EX31_RS07840 at 51.970 kb on - strand, within EX31_RS07840 at 51.970 kb on - strand, within EX31_RS07840 at 51.970 kb on - strand, within EX31_RS07840 at 51.970 kb on - strand, within EX31_RS07840 at 51.970 kb on - strand, within EX31_RS07840 at 51.971 kb on + strand, within EX31_RS07840 at 51.971 kb on + strand, within EX31_RS07840 at 51.971 kb on + strand, within EX31_RS07840 at 51.971 kb on + strand, within EX31_RS07840 at 51.971 kb on + strand, within EX31_RS07840 at 51.971 kb on + strand, within EX31_RS07840 at 51.971 kb on + strand, within EX31_RS07840 at 51.971 kb on + strand, within EX31_RS07840 at 51.972 kb on - strand, within EX31_RS07840 at 51.972 kb on - strand, within EX31_RS07840 at 51.972 kb on - strand, within EX31_RS07840 at 51.972 kb on - strand, within EX31_RS07840 at 51.972 kb on - strand, within EX31_RS07840 at 51.972 kb on - strand, within EX31_RS07840 at 51.972 kb on - strand, within EX31_RS07840 at 51.972 kb on - strand, within EX31_RS07840 at 51.972 kb on - strand, within EX31_RS07840 at 51.980 kb on + strand, within EX31_RS07840 at 51.980 kb on + strand, within EX31_RS07840 at 51.981 kb on - strand, within EX31_RS07840 at 51.995 kb on + strand, within EX31_RS07840 at 51.996 kb on - strand, within EX31_RS07840 at 51.996 kb on - strand, within EX31_RS07840 at 52.009 kb on + strand, within EX31_RS07840 at 52.010 kb on - strand, within EX31_RS07840 at 52.029 kb on - strand, within EX31_RS07840 at 52.034 kb on + strand, within EX31_RS07840 at 52.035 kb on - strand, within EX31_RS07840 at 52.035 kb on - strand, within EX31_RS07840 at 52.070 kb on + strand, within EX31_RS07840 at 52.100 kb on + strand, within EX31_RS07840 at 52.100 kb on + strand, within EX31_RS07840 at 52.100 kb on + strand, within EX31_RS07840 at 52.100 kb on + strand, within EX31_RS07840 at 52.101 kb on - strand, within EX31_RS07840 at 52.101 kb on - strand, within EX31_RS07840 at 52.180 kb on - strand at 52.180 kb on - strand at 52.180 kb on - strand at 52.195 kb on - strand at 52.195 kb on - strand at 52.208 kb on + strand at 52.215 kb on + strand at 52.219 kb on - strand at 52.219 kb on - strand at 52.271 kb on + strand at 52.271 kb on + strand at 52.271 kb on + strand at 52.271 kb on + strand at 52.309 kb on - strand at 52.309 kb on - strand at 52.389 kb on + strand, within EX31_RS07845 at 52.389 kb on + strand, within EX31_RS07845 at 52.402 kb on + strand, within EX31_RS07845 at 52.403 kb on - strand, within EX31_RS07845 at 52.403 kb on - strand, within EX31_RS07845 at 52.436 kb on + strand, within EX31_RS07845 at 52.437 kb on - strand, within EX31_RS07845 at 52.437 kb on - strand, within EX31_RS07845 at 52.644 kb on + strand, within EX31_RS07845 at 52.659 kb on + strand, within EX31_RS07845 at 52.676 kb on + strand, within EX31_RS07845 at 52.676 kb on + strand, within EX31_RS07845 at 52.782 kb on - strand, within EX31_RS07845 at 52.782 kb on - strand, within EX31_RS07845 at 52.782 kb on - strand, within EX31_RS07845 at 52.782 kb on - strand, within EX31_RS07845 at 52.782 kb on - strand, within EX31_RS07845 at 52.790 kb on - strand, within EX31_RS07845 at 52.843 kb on + strand, within EX31_RS07845 at 52.844 kb on - strand, within EX31_RS07845 at 52.844 kb on - strand, within EX31_RS07845 at 52.844 kb on - strand, within EX31_RS07845 at 52.863 kb on + strand, within EX31_RS07845 at 52.864 kb on - strand, within EX31_RS07845 at 52.864 kb on - strand, within EX31_RS07845 at 52.955 kb on - strand, within EX31_RS07845 at 52.955 kb on - strand, within EX31_RS07845 at 53.033 kb on + strand, within EX31_RS07845 at 53.033 kb on + strand, within EX31_RS07845 at 53.033 kb on + strand, within EX31_RS07845 at 53.034 kb on - strand, within EX31_RS07845 at 53.034 kb on - strand, within EX31_RS07845 at 53.034 kb on - strand, within EX31_RS07845 at 53.097 kb on + strand, within EX31_RS07845 at 53.097 kb on + strand, within EX31_RS07845 at 53.098 kb on - strand, within EX31_RS07845 at 53.098 kb on - strand, within EX31_RS07845 at 53.098 kb on - strand, within EX31_RS07845 at 53.098 kb on - strand, within EX31_RS07845 at 53.175 kb on + strand at 53.175 kb on + strand at 53.175 kb on + strand at 53.175 kb on + strand at 53.175 kb on + strand at 53.176 kb on - strand at 53.176 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 50,463 - EX31_RS07830 0.88 +1.6 50,550 - +0.4 50,563 - -0.0 50,563 - -0.4 50,603 + +0.6 50,604 - -0.9 50,604 - +0.8 50,604 - +0.3 50,750 + -1.3 50,751 - +0.7 50,761 - -0.1 50,761 - +0.9 50,775 + +0.0 50,775 + +0.5 50,785 + +0.4 50,785 + +2.5 50,785 + +1.0 50,785 + +0.3 50,785 + +0.8 50,786 - -1.7 50,786 - -0.9 50,786 - +0.1 50,786 - +0.7 50,786 - -0.4 50,786 - +1.0 50,786 - -1.2 50,786 - +0.2 50,787 + +1.7 50,787 + -0.9 50,787 + +1.1 50,787 + +0.1 50,787 + +0.1 50,787 + -0.4 50,787 + +0.7 50,787 + +2.7 50,787 + -0.9 50,787 + +0.1 50,787 + +0.5 50,787 + +1.7 50,787 + -1.8 50,788 - +0.4 50,788 - +0.9 50,788 - +0.1 50,788 - +0.6 50,788 - +0.6 50,788 - +0.1 50,788 - -0.3 50,788 - +0.5 50,788 - -0.4 50,788 - +0.0 50,788 - -0.1 50,788 - +0.6 50,788 - +1.0 50,788 - +0.6 50,788 - -0.2 50,797 - +0.6 50,797 - -1.1 50,797 - +0.1 50,801 - +0.0 50,815 + -0.4 50,836 - -0.1 50,893 + +0.4 50,969 + EX31_RS07835 0.20 +0.3 50,973 - EX31_RS07835 0.20 +1.3 50,973 - EX31_RS07835 0.20 +0.3 51,000 - EX31_RS07835 0.25 +0.2 51,012 - EX31_RS07835 0.26 -1.1 51,038 - EX31_RS07835 0.31 +0.8 51,038 - EX31_RS07835 0.31 -0.2 51,103 + EX31_RS07835 0.41 -0.9 51,286 + EX31_RS07835 0.70 -1.0 51,286 + EX31_RS07835 0.70 -1.7 51,286 + EX31_RS07835 0.70 -1.3 51,287 - EX31_RS07835 0.70 -0.7 51,287 - EX31_RS07835 0.70 +0.6 51,288 + EX31_RS07835 0.70 +0.8 51,288 + EX31_RS07835 0.70 -0.0 51,289 - EX31_RS07835 0.71 -1.4 51,289 - EX31_RS07835 0.71 +0.3 51,289 - EX31_RS07835 0.71 +0.5 51,289 - EX31_RS07835 0.71 +0.7 51,289 - EX31_RS07835 0.71 +0.2 51,320 - EX31_RS07835 0.76 +1.5 51,346 + EX31_RS07835 0.80 -0.4 51,392 + EX31_RS07835 0.87 -1.9 51,392 + EX31_RS07835 0.87 +0.6 51,392 + EX31_RS07835 0.87 +0.3 51,453 + +0.1 51,453 + +0.4 51,453 + -1.1 51,453 + +0.6 51,453 + +1.6 51,453 + -0.4 51,454 - -0.7 51,454 - +1.8 51,454 - +0.7 51,454 - +0.2 51,464 - +0.2 51,526 + +1.1 51,527 - -0.5 51,565 + EX31_RS07840 0.13 +1.3 51,565 + EX31_RS07840 0.13 +0.4 51,566 - EX31_RS07840 0.14 -0.1 51,566 - EX31_RS07840 0.14 +2.7 51,566 - EX31_RS07840 0.14 +0.6 51,566 - EX31_RS07840 0.14 +0.1 51,566 - EX31_RS07840 0.14 -0.3 51,594 - EX31_RS07840 0.17 -0.8 51,594 - EX31_RS07840 0.17 +0.0 51,637 + EX31_RS07840 0.23 +1.5 51,637 + EX31_RS07840 0.23 -0.5 51,638 - EX31_RS07840 0.23 -1.1 51,638 - EX31_RS07840 0.23 -1.1 51,672 + EX31_RS07840 0.27 +1.1 51,672 + EX31_RS07840 0.27 -0.2 51,672 + EX31_RS07840 0.27 -0.6 51,673 - EX31_RS07840 0.27 -0.3 51,673 - EX31_RS07840 0.27 -1.2 51,673 - EX31_RS07840 0.27 +1.3 51,673 - EX31_RS07840 0.27 +0.1 51,752 + EX31_RS07840 0.38 +0.9 51,752 + EX31_RS07840 0.38 -1.2 51,752 + EX31_RS07840 0.38 +0.8 51,753 - EX31_RS07840 0.38 +0.4 51,753 - EX31_RS07840 0.38 +1.3 51,753 - EX31_RS07840 0.38 -0.3 51,753 - EX31_RS07840 0.38 +1.0 51,756 - EX31_RS07840 0.38 +0.9 51,756 - EX31_RS07840 0.38 +0.8 51,835 + EX31_RS07840 0.49 -1.1 51,836 - EX31_RS07840 0.49 +0.9 51,836 - EX31_RS07840 0.49 -0.4 51,919 + EX31_RS07840 0.60 +0.8 51,919 + EX31_RS07840 0.60 -1.0 51,919 + EX31_RS07840 0.60 +0.2 51,920 - EX31_RS07840 0.60 -0.2 51,920 - EX31_RS07840 0.60 -0.1 51,969 + EX31_RS07840 0.66 -0.2 51,969 + EX31_RS07840 0.66 +0.7 51,969 + EX31_RS07840 0.66 -1.2 51,969 + EX31_RS07840 0.66 +0.1 51,969 + EX31_RS07840 0.66 -0.4 51,969 + EX31_RS07840 0.66 -0.3 51,969 + EX31_RS07840 0.66 -0.3 51,970 - EX31_RS07840 0.66 +0.6 51,970 - EX31_RS07840 0.66 -1.4 51,970 - EX31_RS07840 0.66 -0.3 51,970 - EX31_RS07840 0.66 +0.6 51,970 - EX31_RS07840 0.66 +0.6 51,970 - EX31_RS07840 0.66 +1.4 51,970 - EX31_RS07840 0.66 -0.0 51,971 + EX31_RS07840 0.66 -0.4 51,971 + EX31_RS07840 0.66 +2.0 51,971 + EX31_RS07840 0.66 -0.4 51,971 + EX31_RS07840 0.66 +0.4 51,971 + EX31_RS07840 0.66 +0.0 51,971 + EX31_RS07840 0.66 +0.7 51,971 + EX31_RS07840 0.66 +1.6 51,971 + EX31_RS07840 0.66 +0.1 51,972 - EX31_RS07840 0.66 +0.9 51,972 - EX31_RS07840 0.66 -1.2 51,972 - EX31_RS07840 0.66 -0.9 51,972 - EX31_RS07840 0.66 +0.9 51,972 - EX31_RS07840 0.66 +0.4 51,972 - EX31_RS07840 0.66 +0.6 51,972 - EX31_RS07840 0.66 -0.3 51,972 - EX31_RS07840 0.66 +0.9 51,972 - EX31_RS07840 0.66 +1.2 51,980 + EX31_RS07840 0.67 +1.3 51,980 + EX31_RS07840 0.67 +1.5 51,981 - EX31_RS07840 0.68 +1.9 51,995 + EX31_RS07840 0.69 -0.2 51,996 - EX31_RS07840 0.70 +1.4 51,996 - EX31_RS07840 0.70 -0.1 52,009 + EX31_RS07840 0.71 +0.7 52,010 - EX31_RS07840 0.71 -1.4 52,029 - EX31_RS07840 0.74 +0.6 52,034 + EX31_RS07840 0.74 +1.0 52,035 - EX31_RS07840 0.75 -0.2 52,035 - EX31_RS07840 0.75 -0.2 52,070 + EX31_RS07840 0.79 -0.9 52,100 + EX31_RS07840 0.83 +1.5 52,100 + EX31_RS07840 0.83 +0.7 52,100 + EX31_RS07840 0.83 +0.4 52,100 + EX31_RS07840 0.83 -1.2 52,101 - EX31_RS07840 0.83 +2.6 52,101 - EX31_RS07840 0.83 -1.6 52,180 - +1.2 52,180 - -0.3 52,180 - +0.3 52,195 - +1.0 52,195 - -0.2 52,208 + +1.1 52,215 + -0.7 52,219 - -0.8 52,219 - -0.7 52,271 + +1.9 52,271 + +0.1 52,271 + +1.1 52,271 + -0.3 52,309 - -0.5 52,309 - +0.1 52,389 + EX31_RS07845 0.17 -2.4 52,389 + EX31_RS07845 0.17 -1.3 52,402 + EX31_RS07845 0.19 +1.3 52,403 - EX31_RS07845 0.19 -0.4 52,403 - EX31_RS07845 0.19 +0.6 52,436 + EX31_RS07845 0.22 +0.5 52,437 - EX31_RS07845 0.22 +0.2 52,437 - EX31_RS07845 0.22 -0.7 52,644 + EX31_RS07845 0.42 +0.1 52,659 + EX31_RS07845 0.43 +0.4 52,676 + EX31_RS07845 0.45 +1.0 52,676 + EX31_RS07845 0.45 -0.1 52,782 - EX31_RS07845 0.55 +0.6 52,782 - EX31_RS07845 0.55 +0.2 52,782 - EX31_RS07845 0.55 -0.3 52,782 - EX31_RS07845 0.55 +1.1 52,782 - EX31_RS07845 0.55 +1.5 52,790 - EX31_RS07845 0.56 +1.1 52,843 + EX31_RS07845 0.61 +2.5 52,844 - EX31_RS07845 0.61 +1.1 52,844 - EX31_RS07845 0.61 +1.4 52,844 - EX31_RS07845 0.61 +0.5 52,863 + EX31_RS07845 0.62 +0.4 52,864 - EX31_RS07845 0.63 +0.1 52,864 - EX31_RS07845 0.63 -1.2 52,955 - EX31_RS07845 0.71 +0.8 52,955 - EX31_RS07845 0.71 +0.4 53,033 + EX31_RS07845 0.79 -2.9 53,033 + EX31_RS07845 0.79 -0.9 53,033 + EX31_RS07845 0.79 +1.1 53,034 - EX31_RS07845 0.79 -0.1 53,034 - EX31_RS07845 0.79 +0.5 53,034 - EX31_RS07845 0.79 -1.5 53,097 + EX31_RS07845 0.85 +1.1 53,097 + EX31_RS07845 0.85 +0.5 53,098 - EX31_RS07845 0.85 -3.0 53,098 - EX31_RS07845 0.85 -0.6 53,098 - EX31_RS07845 0.85 +0.3 53,098 - EX31_RS07845 0.85 -0.1 53,175 + -0.3 53,175 + +1.1 53,175 + -0.4 53,175 + -0.0 53,175 + +0.2 53,176 - -0.3 53,176 - +0.6
Or see this region's nucleotide sequence