Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06960 and EX31_RS06965 are separated by 64 nucleotides EX31_RS06965 and EX31_RS06970 are separated by 246 nucleotides
EX31_RS06960: EX31_RS06960 - DNA replication terminus site-binding protein, at 180,077 to 181,012
_RS06960
EX31_RS06965: EX31_RS06965 - class II fumarate hydratase, at 181,077 to 182,474
_RS06965
EX31_RS06970: EX31_RS06970 - mannose-6-phosphate isomerase, at 182,721 to 183,902
_RS06970
Position (kb) 181
182
183 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 180.086 kb on + strand at 180.086 kb on + strand at 180.086 kb on + strand at 180.093 kb on + strand at 180.189 kb on + strand, within EX31_RS06960 at 180.193 kb on + strand, within EX31_RS06960 at 180.193 kb on + strand, within EX31_RS06960 at 180.194 kb on - strand, within EX31_RS06960 at 180.207 kb on + strand, within EX31_RS06960 at 180.207 kb on + strand, within EX31_RS06960 at 180.227 kb on - strand, within EX31_RS06960 at 180.288 kb on + strand, within EX31_RS06960 at 180.319 kb on + strand, within EX31_RS06960 at 180.320 kb on - strand, within EX31_RS06960 at 180.320 kb on - strand, within EX31_RS06960 at 180.323 kb on - strand, within EX31_RS06960 at 180.504 kb on + strand, within EX31_RS06960 at 180.504 kb on + strand, within EX31_RS06960 at 180.504 kb on + strand, within EX31_RS06960 at 180.508 kb on + strand, within EX31_RS06960 at 180.508 kb on + strand, within EX31_RS06960 at 180.508 kb on + strand, within EX31_RS06960 at 180.508 kb on + strand, within EX31_RS06960 at 180.558 kb on - strand, within EX31_RS06960 at 180.558 kb on - strand, within EX31_RS06960 at 180.604 kb on + strand, within EX31_RS06960 at 180.604 kb on + strand, within EX31_RS06960 at 180.604 kb on + strand, within EX31_RS06960 at 180.605 kb on - strand, within EX31_RS06960 at 180.607 kb on + strand, within EX31_RS06960 at 180.610 kb on + strand, within EX31_RS06960 at 180.683 kb on + strand, within EX31_RS06960 at 180.684 kb on - strand, within EX31_RS06960 at 180.709 kb on + strand, within EX31_RS06960 at 180.710 kb on - strand, within EX31_RS06960 at 180.861 kb on + strand, within EX31_RS06960 at 180.892 kb on + strand, within EX31_RS06960 at 180.892 kb on + strand, within EX31_RS06960 at 180.893 kb on - strand, within EX31_RS06960 at 180.893 kb on - strand, within EX31_RS06960 at 180.914 kb on + strand, within EX31_RS06960 at 180.914 kb on + strand, within EX31_RS06960 at 180.914 kb on + strand, within EX31_RS06960 at 180.938 kb on - strand at 180.938 kb on - strand at 180.938 kb on - strand at 180.941 kb on + strand at 180.941 kb on + strand at 180.942 kb on - strand at 180.942 kb on - strand at 181.010 kb on + strand at 181.062 kb on + strand at 181.063 kb on - strand at 181.063 kb on - strand at 181.063 kb on - strand at 181.066 kb on + strand at 181.067 kb on - strand at 181.284 kb on - strand, within EX31_RS06965 at 181.284 kb on - strand, within EX31_RS06965 at 181.295 kb on + strand, within EX31_RS06965 at 181.296 kb on - strand, within EX31_RS06965 at 181.296 kb on - strand, within EX31_RS06965 at 181.336 kb on - strand, within EX31_RS06965 at 181.336 kb on - strand, within EX31_RS06965 at 181.337 kb on + strand, within EX31_RS06965 at 181.337 kb on + strand, within EX31_RS06965 at 181.337 kb on + strand, within EX31_RS06965 at 181.338 kb on - strand, within EX31_RS06965 at 181.373 kb on + strand, within EX31_RS06965 at 181.374 kb on - strand, within EX31_RS06965 at 181.472 kb on + strand, within EX31_RS06965 at 181.472 kb on + strand, within EX31_RS06965 at 181.472 kb on + strand, within EX31_RS06965 at 181.473 kb on - strand, within EX31_RS06965 at 181.473 kb on - strand, within EX31_RS06965 at 181.473 kb on - strand, within EX31_RS06965 at 181.473 kb on - strand, within EX31_RS06965 at 181.473 kb on - strand, within EX31_RS06965 at 181.582 kb on - strand, within EX31_RS06965 at 181.764 kb on - strand, within EX31_RS06965 at 181.812 kb on - strand, within EX31_RS06965 at 182.096 kb on + strand, within EX31_RS06965 at 182.159 kb on + strand, within EX31_RS06965 at 182.159 kb on + strand, within EX31_RS06965 at 182.160 kb on - strand, within EX31_RS06965 at 182.160 kb on - strand, within EX31_RS06965 at 182.298 kb on - strand, within EX31_RS06965 at 182.486 kb on + strand at 182.495 kb on - strand at 182.498 kb on - strand at 182.498 kb on - strand at 182.498 kb on - strand at 182.506 kb on - strand at 182.526 kb on + strand at 182.526 kb on + strand at 182.574 kb on + strand at 182.574 kb on + strand at 182.574 kb on + strand at 182.575 kb on - strand at 182.575 kb on - strand at 182.577 kb on - strand at 182.577 kb on - strand at 182.584 kb on + strand at 182.584 kb on + strand at 182.584 kb on + strand at 182.585 kb on - strand at 182.585 kb on - strand at 182.585 kb on - strand at 182.585 kb on - strand at 182.585 kb on - strand at 182.585 kb on - strand at 182.585 kb on - strand at 182.585 kb on - strand at 182.586 kb on + strand at 182.586 kb on + strand at 182.586 kb on + strand at 182.587 kb on - strand at 182.587 kb on - strand at 182.587 kb on - strand at 182.597 kb on + strand at 182.599 kb on + strand at 182.599 kb on + strand at 182.600 kb on - strand at 182.600 kb on - strand at 182.663 kb on + strand at 182.663 kb on + strand at 182.688 kb on + strand at 182.689 kb on - strand at 182.698 kb on + strand at 182.698 kb on + strand at 182.706 kb on - strand at 182.735 kb on + strand at 182.787 kb on + strand at 182.795 kb on + strand at 182.853 kb on - strand, within EX31_RS06970 at 182.905 kb on + strand, within EX31_RS06970 at 182.905 kb on + strand, within EX31_RS06970 at 182.906 kb on - strand, within EX31_RS06970 at 183.097 kb on - strand, within EX31_RS06970 at 183.302 kb on + strand, within EX31_RS06970 at 183.302 kb on + strand, within EX31_RS06970 at 183.302 kb on + strand, within EX31_RS06970 at 183.378 kb on - strand, within EX31_RS06970 at 183.433 kb on + strand, within EX31_RS06970 at 183.434 kb on - strand, within EX31_RS06970 at 183.434 kb on - strand, within EX31_RS06970 at 183.434 kb on - strand, within EX31_RS06970
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 180,086 + +1.1 180,086 + +0.5 180,086 + -0.5 180,093 + +0.5 180,189 + EX31_RS06960 0.12 +2.1 180,193 + EX31_RS06960 0.12 +1.5 180,193 + EX31_RS06960 0.12 +1.4 180,194 - EX31_RS06960 0.12 +0.3 180,207 + EX31_RS06960 0.14 +0.5 180,207 + EX31_RS06960 0.14 +2.9 180,227 - EX31_RS06960 0.16 -0.5 180,288 + EX31_RS06960 0.23 +0.7 180,319 + EX31_RS06960 0.26 +0.5 180,320 - EX31_RS06960 0.26 +0.5 180,320 - EX31_RS06960 0.26 +0.5 180,323 - EX31_RS06960 0.26 +0.9 180,504 + EX31_RS06960 0.46 +0.6 180,504 + EX31_RS06960 0.46 -1.0 180,504 + EX31_RS06960 0.46 -0.1 180,508 + EX31_RS06960 0.46 +1.5 180,508 + EX31_RS06960 0.46 +1.7 180,508 + EX31_RS06960 0.46 +0.1 180,508 + EX31_RS06960 0.46 -1.3 180,558 - EX31_RS06960 0.51 +0.3 180,558 - EX31_RS06960 0.51 -1.1 180,604 + EX31_RS06960 0.56 +0.1 180,604 + EX31_RS06960 0.56 +0.5 180,604 + EX31_RS06960 0.56 +0.5 180,605 - EX31_RS06960 0.56 +0.5 180,607 + EX31_RS06960 0.57 +1.1 180,610 + EX31_RS06960 0.57 -0.1 180,683 + EX31_RS06960 0.65 -2.0 180,684 - EX31_RS06960 0.65 -0.1 180,709 + EX31_RS06960 0.68 -1.7 180,710 - EX31_RS06960 0.68 +0.0 180,861 + EX31_RS06960 0.84 +1.5 180,892 + EX31_RS06960 0.87 +1.5 180,892 + EX31_RS06960 0.87 +3.2 180,893 - EX31_RS06960 0.87 -0.3 180,893 - EX31_RS06960 0.87 +0.5 180,914 + EX31_RS06960 0.89 +0.5 180,914 + EX31_RS06960 0.89 +0.7 180,914 + EX31_RS06960 0.89 +1.1 180,938 - +0.0 180,938 - -2.1 180,938 - +1.5 180,941 + -0.7 180,941 + +0.2 180,942 - +0.5 180,942 - +0.1 181,010 + +2.5 181,062 + -1.1 181,063 - +2.8 181,063 - +0.3 181,063 - -0.1 181,066 + -0.5 181,067 - -1.1 181,284 - EX31_RS06965 0.15 +0.2 181,284 - EX31_RS06965 0.15 +0.3 181,295 + EX31_RS06965 0.16 +1.5 181,296 - EX31_RS06965 0.16 -0.5 181,296 - EX31_RS06965 0.16 -0.5 181,336 - EX31_RS06965 0.19 -3.0 181,336 - EX31_RS06965 0.19 +2.3 181,337 + EX31_RS06965 0.19 +3.1 181,337 + EX31_RS06965 0.19 -0.1 181,337 + EX31_RS06965 0.19 -0.5 181,338 - EX31_RS06965 0.19 +1.0 181,373 + EX31_RS06965 0.21 -1.1 181,374 - EX31_RS06965 0.21 +0.1 181,472 + EX31_RS06965 0.28 +0.5 181,472 + EX31_RS06965 0.28 -0.5 181,472 + EX31_RS06965 0.28 -0.4 181,473 - EX31_RS06965 0.28 +0.1 181,473 - EX31_RS06965 0.28 +0.5 181,473 - EX31_RS06965 0.28 -0.2 181,473 - EX31_RS06965 0.28 -2.8 181,473 - EX31_RS06965 0.28 -0.8 181,582 - EX31_RS06965 0.36 +0.2 181,764 - EX31_RS06965 0.49 +2.5 181,812 - EX31_RS06965 0.53 -0.5 182,096 + EX31_RS06965 0.73 -0.7 182,159 + EX31_RS06965 0.77 -0.8 182,159 + EX31_RS06965 0.77 +2.5 182,160 - EX31_RS06965 0.77 -0.2 182,160 - EX31_RS06965 0.77 -0.3 182,298 - EX31_RS06965 0.87 +0.7 182,486 + -0.5 182,495 - -1.1 182,498 - +0.1 182,498 - -2.5 182,498 - +2.1 182,506 - +1.2 182,526 + +1.3 182,526 + +2.1 182,574 + +0.3 182,574 + +0.3 182,574 + -1.1 182,575 - +2.1 182,575 - +1.8 182,577 - -1.3 182,577 - +0.9 182,584 + +0.5 182,584 + +0.5 182,584 + +0.8 182,585 - -0.6 182,585 - -0.5 182,585 - +3.7 182,585 - +0.9 182,585 - +0.8 182,585 - +1.2 182,585 - -1.3 182,585 - +1.5 182,586 + -0.1 182,586 + -0.2 182,586 + +2.5 182,587 - +1.5 182,587 - +1.1 182,587 - +1.5 182,597 + +1.2 182,599 + -0.8 182,599 + -1.7 182,600 - +1.1 182,600 - +0.8 182,663 + +2.5 182,663 + +1.5 182,688 + +1.2 182,689 - +1.5 182,698 + +1.1 182,698 + -0.3 182,706 - +2.1 182,735 + +2.8 182,787 + +1.1 182,795 + +0.5 182,853 - EX31_RS06970 0.11 +0.5 182,905 + EX31_RS06970 0.16 +1.2 182,905 + EX31_RS06970 0.16 +0.6 182,906 - EX31_RS06970 0.16 +2.8 183,097 - EX31_RS06970 0.32 -0.1 183,302 + EX31_RS06970 0.49 -0.5 183,302 + EX31_RS06970 0.49 +0.6 183,302 + EX31_RS06970 0.49 -0.5 183,378 - EX31_RS06970 0.56 +0.9 183,433 + EX31_RS06970 0.60 -0.3 183,434 - EX31_RS06970 0.60 -0.7 183,434 - EX31_RS06970 0.60 -1.8 183,434 - EX31_RS06970 0.60 -0.5
Or see this region's nucleotide sequence