Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05995 and EX31_RS06000 are separated by 112 nucleotides EX31_RS06000 and EX31_RS06005 are separated by 71 nucleotides EX31_RS06005 and EX31_RS06010 are separated by 100 nucleotides
EX31_RS05995: EX31_RS05995 - membrane protein insertase YidC, at 358,279 to 359,913
_RS05995
EX31_RS06000: EX31_RS06000 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 360,026 to 361,390
_RS06000
EX31_RS06005: EX31_RS06005 - short chain dehydrogenase, at 361,462 to 362,061
_RS06005
EX31_RS06010: EX31_RS06010 - LysR family transcriptional regulator, at 362,162 to 363,049
_RS06010
Position (kb) 360
361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 359.860 kb on + strand at 359.860 kb on + strand at 359.911 kb on + strand at 359.911 kb on + strand at 359.911 kb on + strand at 359.912 kb on - strand at 359.958 kb on + strand at 359.959 kb on - strand at 359.994 kb on + strand at 360.000 kb on + strand at 360.001 kb on - strand at 360.025 kb on + strand at 360.025 kb on + strand at 360.026 kb on - strand at 360.026 kb on - strand at 360.046 kb on + strand at 360.135 kb on + strand at 360.139 kb on + strand at 360.140 kb on - strand at 360.158 kb on + strand at 360.168 kb on - strand, within EX31_RS06000 at 360.168 kb on - strand, within EX31_RS06000 at 360.168 kb on - strand, within EX31_RS06000 at 360.168 kb on - strand, within EX31_RS06000 at 360.317 kb on - strand, within EX31_RS06000 at 360.382 kb on + strand, within EX31_RS06000 at 360.592 kb on - strand, within EX31_RS06000 at 360.607 kb on + strand, within EX31_RS06000 at 360.799 kb on + strand, within EX31_RS06000 at 360.799 kb on + strand, within EX31_RS06000 at 360.800 kb on - strand, within EX31_RS06000 at 360.918 kb on + strand, within EX31_RS06000 at 361.008 kb on + strand, within EX31_RS06000 at 361.008 kb on + strand, within EX31_RS06000 at 361.008 kb on + strand, within EX31_RS06000 at 361.009 kb on - strand, within EX31_RS06000 at 361.009 kb on - strand, within EX31_RS06000 at 361.012 kb on + strand, within EX31_RS06000 at 361.023 kb on + strand, within EX31_RS06000 at 361.168 kb on + strand, within EX31_RS06000 at 361.169 kb on - strand, within EX31_RS06000 at 361.336 kb on + strand at 361.350 kb on + strand at 361.379 kb on - strand at 361.388 kb on + strand at 361.388 kb on + strand at 361.389 kb on - strand at 361.389 kb on - strand at 361.389 kb on - strand at 361.389 kb on - strand at 361.389 kb on - strand at 361.474 kb on - strand at 361.475 kb on + strand at 361.475 kb on + strand at 361.476 kb on - strand at 361.572 kb on - strand, within EX31_RS06005 at 361.591 kb on + strand, within EX31_RS06005 at 361.591 kb on + strand, within EX31_RS06005 at 361.591 kb on + strand, within EX31_RS06005 at 361.591 kb on + strand, within EX31_RS06005 at 361.592 kb on - strand, within EX31_RS06005 at 361.592 kb on - strand, within EX31_RS06005 at 361.594 kb on + strand, within EX31_RS06005 at 361.594 kb on + strand, within EX31_RS06005 at 361.595 kb on - strand, within EX31_RS06005 at 361.678 kb on + strand, within EX31_RS06005 at 361.679 kb on - strand, within EX31_RS06005 at 361.679 kb on - strand, within EX31_RS06005 at 361.679 kb on - strand, within EX31_RS06005 at 361.807 kb on - strand, within EX31_RS06005 at 361.878 kb on + strand, within EX31_RS06005 at 361.878 kb on + strand, within EX31_RS06005 at 361.878 kb on + strand, within EX31_RS06005 at 361.879 kb on - strand, within EX31_RS06005 at 361.879 kb on - strand, within EX31_RS06005 at 361.879 kb on - strand, within EX31_RS06005 at 361.879 kb on - strand, within EX31_RS06005 at 361.879 kb on - strand, within EX31_RS06005 at 361.879 kb on - strand, within EX31_RS06005 at 361.879 kb on - strand, within EX31_RS06005 at 361.924 kb on + strand, within EX31_RS06005 at 361.924 kb on + strand, within EX31_RS06005 at 361.924 kb on + strand, within EX31_RS06005 at 361.924 kb on + strand, within EX31_RS06005 at 361.924 kb on + strand, within EX31_RS06005 at 361.925 kb on - strand, within EX31_RS06005 at 361.925 kb on - strand, within EX31_RS06005 at 361.944 kb on + strand, within EX31_RS06005 at 361.944 kb on + strand, within EX31_RS06005 at 362.001 kb on + strand, within EX31_RS06005 at 362.031 kb on + strand at 362.031 kb on + strand at 362.031 kb on + strand at 362.031 kb on + strand at 362.031 kb on + strand at 362.031 kb on + strand at 362.031 kb on + strand at 362.031 kb on + strand at 362.031 kb on + strand at 362.031 kb on + strand at 362.031 kb on + strand at 362.031 kb on + strand at 362.031 kb on + strand at 362.032 kb on - strand at 362.032 kb on - strand at 362.032 kb on - strand at 362.032 kb on - strand at 362.032 kb on - strand at 362.032 kb on - strand at 362.032 kb on - strand at 362.032 kb on - strand at 362.032 kb on - strand at 362.066 kb on + strand at 362.066 kb on + strand at 362.067 kb on - strand at 362.067 kb on - strand at 362.067 kb on - strand at 362.067 kb on - strand at 362.067 kb on - strand at 362.113 kb on + strand at 362.114 kb on - strand at 362.117 kb on + strand at 362.117 kb on + strand at 362.118 kb on - strand at 362.119 kb on + strand at 362.119 kb on + strand at 362.120 kb on - strand at 362.120 kb on - strand at 362.127 kb on + strand at 362.127 kb on + strand at 362.127 kb on + strand at 362.158 kb on + strand at 362.158 kb on + strand at 362.158 kb on + strand at 362.159 kb on - strand at 362.159 kb on - strand at 362.167 kb on + strand at 362.200 kb on - strand at 362.357 kb on + strand, within EX31_RS06010 at 362.358 kb on - strand, within EX31_RS06010
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 359,860 + +0.8 359,860 + -0.3 359,911 + -0.6 359,911 + +0.2 359,911 + +0.1 359,912 - +1.4 359,958 + -0.5 359,959 - -0.7 359,994 + -0.4 360,000 + -0.3 360,001 - +0.2 360,025 + -3.3 360,025 + +0.1 360,026 - -0.3 360,026 - -1.6 360,046 + -1.5 360,135 + -2.9 360,139 + -2.3 360,140 - +0.7 360,158 + -1.7 360,168 - EX31_RS06000 0.10 -0.3 360,168 - EX31_RS06000 0.10 -1.1 360,168 - EX31_RS06000 0.10 -2.3 360,168 - EX31_RS06000 0.10 -0.3 360,317 - EX31_RS06000 0.21 +0.4 360,382 + EX31_RS06000 0.26 -1.5 360,592 - EX31_RS06000 0.41 +3.6 360,607 + EX31_RS06000 0.43 -2.8 360,799 + EX31_RS06000 0.57 -0.5 360,799 + EX31_RS06000 0.57 -0.9 360,800 - EX31_RS06000 0.57 -0.7 360,918 + EX31_RS06000 0.65 -1.1 361,008 + EX31_RS06000 0.72 -1.0 361,008 + EX31_RS06000 0.72 -2.1 361,008 + EX31_RS06000 0.72 -2.3 361,009 - EX31_RS06000 0.72 -1.7 361,009 - EX31_RS06000 0.72 -1.6 361,012 + EX31_RS06000 0.72 -1.9 361,023 + EX31_RS06000 0.73 +0.0 361,168 + EX31_RS06000 0.84 -0.6 361,169 - EX31_RS06000 0.84 +1.3 361,336 + -0.7 361,350 + -0.5 361,379 - -1.7 361,388 + +0.0 361,388 + +0.1 361,389 - -0.0 361,389 - -0.7 361,389 - -0.7 361,389 - +1.3 361,389 - +0.2 361,474 - +1.2 361,475 + +1.5 361,475 + -1.2 361,476 - -0.1 361,572 - EX31_RS06005 0.18 -0.7 361,591 + EX31_RS06005 0.21 +0.5 361,591 + EX31_RS06005 0.21 -0.1 361,591 + EX31_RS06005 0.21 +0.8 361,591 + EX31_RS06005 0.21 +0.5 361,592 - EX31_RS06005 0.22 +0.8 361,592 - EX31_RS06005 0.22 +0.6 361,594 + EX31_RS06005 0.22 -0.7 361,594 + EX31_RS06005 0.22 -0.4 361,595 - EX31_RS06005 0.22 +0.1 361,678 + EX31_RS06005 0.36 +1.1 361,679 - EX31_RS06005 0.36 +0.5 361,679 - EX31_RS06005 0.36 -0.2 361,679 - EX31_RS06005 0.36 +0.3 361,807 - EX31_RS06005 0.57 -0.4 361,878 + EX31_RS06005 0.69 -0.0 361,878 + EX31_RS06005 0.69 -0.7 361,878 + EX31_RS06005 0.69 +0.8 361,879 - EX31_RS06005 0.69 +0.7 361,879 - EX31_RS06005 0.69 -0.8 361,879 - EX31_RS06005 0.69 -0.3 361,879 - EX31_RS06005 0.69 +0.3 361,879 - EX31_RS06005 0.69 +0.6 361,879 - EX31_RS06005 0.69 +0.8 361,879 - EX31_RS06005 0.69 +0.4 361,924 + EX31_RS06005 0.77 +0.5 361,924 + EX31_RS06005 0.77 +1.3 361,924 + EX31_RS06005 0.77 -1.4 361,924 + EX31_RS06005 0.77 -1.4 361,924 + EX31_RS06005 0.77 -0.3 361,925 - EX31_RS06005 0.77 +0.1 361,925 - EX31_RS06005 0.77 -0.0 361,944 + EX31_RS06005 0.80 -0.5 361,944 + EX31_RS06005 0.80 -2.8 362,001 + EX31_RS06005 0.90 +0.8 362,031 + -0.6 362,031 + -0.0 362,031 + -0.1 362,031 + +0.5 362,031 + +0.1 362,031 + -0.1 362,031 + -2.9 362,031 + +0.1 362,031 + +0.6 362,031 + +0.3 362,031 + -1.2 362,031 + -0.7 362,031 + +0.3 362,032 - -0.5 362,032 - +1.8 362,032 - +0.7 362,032 - +0.3 362,032 - -0.1 362,032 - +1.5 362,032 - +0.8 362,032 - +0.7 362,032 - +0.5 362,066 + -0.4 362,066 + -0.8 362,067 - +0.3 362,067 - -0.2 362,067 - -0.4 362,067 - +0.5 362,067 - +0.3 362,113 + +1.9 362,114 - -0.4 362,117 + -0.1 362,117 + +0.3 362,118 - +0.5 362,119 + +2.3 362,119 + -1.9 362,120 - +1.0 362,120 - +0.9 362,127 + +0.5 362,127 + -0.3 362,127 + -0.5 362,158 + +1.3 362,158 + +1.0 362,158 + +0.1 362,159 - -0.1 362,159 - -0.4 362,167 + -0.6 362,200 - -0.3 362,357 + EX31_RS06010 0.22 -1.7 362,358 - EX31_RS06010 0.22 +1.0
Or see this region's nucleotide sequence