Strain Fitness in Rahnella sp. WP5 around EX31_RS03305

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03300 and EX31_RS03305 are separated by 135 nucleotidesEX31_RS03305 and EX31_RS03310 are separated by 885 nucleotides EX31_RS03300: EX31_RS03300 - ABC transporter ATP-binding protein, at 150,317 to 151,240 _RS03300 EX31_RS03305: EX31_RS03305 - carbonate dehydratase, at 151,376 to 152,032 _RS03305 EX31_RS03310: EX31_RS03310 - hypothetical protein, at 152,918 to 153,250 _RS03310 Position (kb) 151 152 153Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 150.382 kb on + strandat 150.383 kb on - strandat 150.383 kb on - strandat 150.383 kb on - strandat 150.383 kb on - strandat 150.389 kb on - strandat 150.395 kb on + strandat 150.534 kb on - strand, within EX31_RS03300at 150.617 kb on - strand, within EX31_RS03300at 150.617 kb on - strand, within EX31_RS03300at 150.619 kb on + strand, within EX31_RS03300at 150.620 kb on - strand, within EX31_RS03300at 150.658 kb on - strand, within EX31_RS03300at 150.658 kb on - strand, within EX31_RS03300at 150.729 kb on - strand, within EX31_RS03300at 150.729 kb on - strand, within EX31_RS03300at 150.729 kb on - strand, within EX31_RS03300at 150.927 kb on + strand, within EX31_RS03300at 150.940 kb on + strand, within EX31_RS03300at 150.980 kb on - strand, within EX31_RS03300at 151.024 kb on + strand, within EX31_RS03300at 151.187 kb on + strandat 151.187 kb on + strandat 151.188 kb on - strandat 151.188 kb on - strandat 151.201 kb on - strandat 151.233 kb on + strandat 151.233 kb on + strandat 151.233 kb on + strandat 151.233 kb on + strandat 151.233 kb on + strandat 151.233 kb on + strandat 151.234 kb on - strandat 151.234 kb on - strandat 151.234 kb on - strandat 151.234 kb on - strandat 151.234 kb on - strandat 151.252 kb on - strandat 151.275 kb on + strandat 151.275 kb on + strandat 151.275 kb on + strandat 151.275 kb on + strandat 151.275 kb on + strandat 151.275 kb on + strandat 151.276 kb on - strandat 151.276 kb on - strandat 151.276 kb on - strandat 151.276 kb on - strandat 151.329 kb on + strandat 151.329 kb on + strandat 151.329 kb on + strandat 151.329 kb on + strandat 151.330 kb on - strandat 151.331 kb on + strandat 151.331 kb on + strandat 151.331 kb on + strandat 151.331 kb on + strandat 151.331 kb on + strandat 151.331 kb on + strandat 151.331 kb on + strandat 151.331 kb on + strandat 151.332 kb on - strandat 151.332 kb on - strandat 151.332 kb on - strandat 151.332 kb on - strandat 151.332 kb on - strandat 151.332 kb on - strandat 151.332 kb on - strandat 151.332 kb on - strandat 151.332 kb on - strandat 151.332 kb on - strandat 151.332 kb on - strandat 151.334 kb on + strandat 151.334 kb on + strandat 151.334 kb on + strandat 151.334 kb on + strandat 151.335 kb on - strandat 151.335 kb on - strandat 151.335 kb on - strandat 151.335 kb on - strandat 151.335 kb on - strandat 151.335 kb on - strandat 151.355 kb on + strandat 151.355 kb on + strandat 151.355 kb on + strandat 151.365 kb on + strandat 151.366 kb on - strandat 151.366 kb on - strandat 151.366 kb on - strandat 151.366 kb on - strandat 151.368 kb on + strandat 151.368 kb on + strandat 151.368 kb on + strandat 151.386 kb on + strandat 151.386 kb on + strandat 151.386 kb on + strandat 151.386 kb on + strandat 151.386 kb on + strandat 151.386 kb on - strandat 151.387 kb on - strandat 151.387 kb on - strandat 151.387 kb on - strandat 151.387 kb on - strandat 151.387 kb on - strandat 151.387 kb on - strandat 151.600 kb on + strand, within EX31_RS03305at 151.600 kb on + strand, within EX31_RS03305at 151.600 kb on + strand, within EX31_RS03305at 151.600 kb on + strand, within EX31_RS03305at 151.601 kb on - strand, within EX31_RS03305at 151.622 kb on + strand, within EX31_RS03305at 151.622 kb on + strand, within EX31_RS03305at 151.622 kb on + strand, within EX31_RS03305at 151.622 kb on + strand, within EX31_RS03305at 151.622 kb on + strand, within EX31_RS03305at 151.622 kb on + strand, within EX31_RS03305at 151.622 kb on + strand, within EX31_RS03305at 151.622 kb on + strand, within EX31_RS03305at 151.622 kb on + strand, within EX31_RS03305at 151.622 kb on + strand, within EX31_RS03305at 151.622 kb on + strand, within EX31_RS03305at 151.623 kb on - strand, within EX31_RS03305at 151.623 kb on - strand, within EX31_RS03305at 151.658 kb on - strand, within EX31_RS03305at 151.658 kb on - strand, within EX31_RS03305at 151.671 kb on - strand, within EX31_RS03305at 151.726 kb on + strand, within EX31_RS03305at 151.726 kb on + strand, within EX31_RS03305at 151.727 kb on - strand, within EX31_RS03305at 151.727 kb on - strand, within EX31_RS03305at 151.758 kb on - strand, within EX31_RS03305at 151.812 kb on + strand, within EX31_RS03305at 151.812 kb on + strand, within EX31_RS03305at 151.812 kb on + strand, within EX31_RS03305at 151.812 kb on + strand, within EX31_RS03305at 151.813 kb on - strand, within EX31_RS03305at 151.813 kb on - strand, within EX31_RS03305at 151.813 kb on - strand, within EX31_RS03305at 151.813 kb on - strand, within EX31_RS03305at 151.813 kb on - strand, within EX31_RS03305at 151.813 kb on - strand, within EX31_RS03305at 151.813 kb on - strand, within EX31_RS03305at 151.813 kb on - strand, within EX31_RS03305at 151.813 kb on - strand, within EX31_RS03305at 151.842 kb on - strand, within EX31_RS03305at 151.917 kb on - strand, within EX31_RS03305at 152.049 kb on - strandat 152.103 kb on - strandat 152.105 kb on + strandat 152.126 kb on - strandat 152.168 kb on + strandat 152.168 kb on + strandat 152.168 kb on + strandat 152.169 kb on - strandat 152.169 kb on - strandat 152.169 kb on - strandat 152.170 kb on + strandat 152.170 kb on + strandat 152.170 kb on + strandat 152.170 kb on + strandat 152.170 kb on + strandat 152.170 kb on + strandat 152.170 kb on + strandat 152.170 kb on + strandat 152.170 kb on + strandat 152.170 kb on + strandat 152.170 kb on + strandat 152.170 kb on + strandat 152.171 kb on - strandat 152.171 kb on - strandat 152.171 kb on - strandat 152.171 kb on - strandat 152.171 kb on - strandat 152.171 kb on - strandat 152.171 kb on - strandat 152.171 kb on - strandat 152.171 kb on - strandat 152.171 kb on - strandat 152.171 kb on - strandat 152.281 kb on + strandat 152.282 kb on - strandat 152.339 kb on + strandat 152.340 kb on - strandat 152.352 kb on - strandat 152.352 kb on - strandat 152.369 kb on - strandat 152.390 kb on + strandat 152.391 kb on - strandat 152.391 kb on - strandat 152.394 kb on + strandat 152.417 kb on - strandat 152.457 kb on - strandat 152.457 kb on - strandat 152.461 kb on - strandat 152.512 kb on - strandat 152.625 kb on + strandat 152.689 kb on + strandat 152.690 kb on - strandat 152.690 kb on - strandat 152.690 kb on - strandat 152.760 kb on + strandat 152.812 kb on - strandat 152.841 kb on + strandat 152.888 kb on - strandat 152.947 kb on + strandat 152.947 kb on + strandat 152.947 kb on + strandat 153.026 kb on + strand, within EX31_RS03310

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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150,382 + -2.2
150,383 - -1.3
150,383 - +0.6
150,383 - -0.3
150,383 - -0.7
150,389 - +0.1
150,395 + +2.0
150,534 - EX31_RS03300 0.23 -0.7
150,617 - EX31_RS03300 0.32 -0.1
150,617 - EX31_RS03300 0.32 -0.5
150,619 + EX31_RS03300 0.33 -2.2
150,620 - EX31_RS03300 0.33 -0.1
150,658 - EX31_RS03300 0.37 -0.4
150,658 - EX31_RS03300 0.37 -0.2
150,729 - EX31_RS03300 0.45 -0.7
150,729 - EX31_RS03300 0.45 +1.1
150,729 - EX31_RS03300 0.45 -2.7
150,927 + EX31_RS03300 0.66 +0.4
150,940 + EX31_RS03300 0.67 +2.4
150,980 - EX31_RS03300 0.72 -0.0
151,024 + EX31_RS03300 0.77 -1.6
151,187 + +0.8
151,187 + -0.1
151,188 - -0.6
151,188 - -1.3
151,201 - -0.2
151,233 + -2.0
151,233 + +0.6
151,233 + +0.7
151,233 + -1.6
151,233 + -0.5
151,233 + +0.1
151,234 - -0.1
151,234 - -0.7
151,234 - -0.9
151,234 - +2.4
151,234 - +1.4
151,252 - -1.0
151,275 + -0.9
151,275 + -0.2
151,275 + +0.1
151,275 + +1.8
151,275 + -0.7
151,275 + -0.2
151,276 - +0.2
151,276 - -0.7
151,276 - +0.8
151,276 - +0.6
151,329 + +0.4
151,329 + +0.3
151,329 + +0.7
151,329 + +1.0
151,330 - -0.9
151,331 + +0.8
151,331 + +0.7
151,331 + +0.9
151,331 + -1.0
151,331 + -1.4
151,331 + -1.5
151,331 + -2.0
151,331 + +0.4
151,332 - -0.1
151,332 - -1.2
151,332 - -0.5
151,332 - +0.3
151,332 - -0.9
151,332 - -0.7
151,332 - -0.1
151,332 - -0.0
151,332 - +0.0
151,332 - +0.5
151,332 - +0.7
151,334 + -0.5
151,334 + +0.2
151,334 + -0.1
151,334 + +0.3
151,335 - -0.7
151,335 - +0.1
151,335 - -3.2
151,335 - +0.4
151,335 - -0.3
151,335 - +0.7
151,355 + -0.8
151,355 + -0.2
151,355 + +1.3
151,365 + -0.6
151,366 - +0.5
151,366 - +0.9
151,366 - +0.1
151,366 - +1.8
151,368 + +0.5
151,368 + +0.1
151,368 + +1.2
151,386 + -0.2
151,386 + +0.5
151,386 + -1.5
151,386 + -0.7
151,386 + +0.8
151,386 - +1.3
151,387 - -0.9
151,387 - +2.2
151,387 - -0.7
151,387 - +0.5
151,387 - -0.2
151,387 - +2.4
151,600 + EX31_RS03305 0.34 -0.0
151,600 + EX31_RS03305 0.34 -0.3
151,600 + EX31_RS03305 0.34 -0.2
151,600 + EX31_RS03305 0.34 +1.0
151,601 - EX31_RS03305 0.34 -0.3
151,622 + EX31_RS03305 0.37 +0.7
151,622 + EX31_RS03305 0.37 +0.3
151,622 + EX31_RS03305 0.37 -0.2
151,622 + EX31_RS03305 0.37 +1.8
151,622 + EX31_RS03305 0.37 -0.5
151,622 + EX31_RS03305 0.37 -1.3
151,622 + EX31_RS03305 0.37 +0.1
151,622 + EX31_RS03305 0.37 +0.2
151,622 + EX31_RS03305 0.37 +0.2
151,622 + EX31_RS03305 0.37 +0.2
151,622 + EX31_RS03305 0.37 +1.3
151,623 - EX31_RS03305 0.38 +0.5
151,623 - EX31_RS03305 0.38 +1.3
151,658 - EX31_RS03305 0.43 +2.0
151,658 - EX31_RS03305 0.43 -2.2
151,671 - EX31_RS03305 0.45 -0.4
151,726 + EX31_RS03305 0.53 -0.4
151,726 + EX31_RS03305 0.53 +0.4
151,727 - EX31_RS03305 0.53 +1.4
151,727 - EX31_RS03305 0.53 +1.0
151,758 - EX31_RS03305 0.58 +0.1
151,812 + EX31_RS03305 0.66 -1.1
151,812 + EX31_RS03305 0.66 +0.6
151,812 + EX31_RS03305 0.66 -1.0
151,812 + EX31_RS03305 0.66 +0.9
151,813 - EX31_RS03305 0.67 +0.5
151,813 - EX31_RS03305 0.67 +0.0
151,813 - EX31_RS03305 0.67 -0.6
151,813 - EX31_RS03305 0.67 +0.2
151,813 - EX31_RS03305 0.67 -0.6
151,813 - EX31_RS03305 0.67 +0.9
151,813 - EX31_RS03305 0.67 -1.2
151,813 - EX31_RS03305 0.67 -1.0
151,813 - EX31_RS03305 0.67 -0.1
151,842 - EX31_RS03305 0.71 -1.5
151,917 - EX31_RS03305 0.82 +1.1
152,049 - +0.3
152,103 - +0.4
152,105 + +1.8
152,126 - +0.7
152,168 + -0.5
152,168 + -0.2
152,168 + -1.5
152,169 - -0.3
152,169 - +0.7
152,169 - +0.3
152,170 + -1.7
152,170 + +1.0
152,170 + +0.8
152,170 + +1.8
152,170 + +0.5
152,170 + +0.6
152,170 + -0.7
152,170 + +0.8
152,170 + -0.3
152,170 + +1.0
152,170 + -0.6
152,170 + -2.2
152,171 - -0.3
152,171 - -0.0
152,171 - +0.5
152,171 - +1.5
152,171 - +0.6
152,171 - +0.2
152,171 - +1.1
152,171 - -0.3
152,171 - -0.0
152,171 - -1.0
152,171 - -0.2
152,281 + +0.2
152,282 - -0.1
152,339 + +1.4
152,340 - +1.3
152,352 - +0.4
152,352 - +0.4
152,369 - +0.1
152,390 + -0.4
152,391 - +0.1
152,391 - -1.3
152,394 + -1.2
152,417 - +1.8
152,457 - -1.2
152,457 - -1.3
152,461 - -0.2
152,512 - -0.7
152,625 + -2.0
152,689 + +0.7
152,690 - +1.3
152,690 - +1.3
152,690 - +0.3
152,760 + -0.6
152,812 - +0.7
152,841 + +0.3
152,888 - -1.2
152,947 + -0.5
152,947 + +0.1
152,947 + +0.4
153,026 + EX31_RS03310 0.32 +0.2

Or see this region's nucleotide sequence