Strain Fitness in Rahnella sp. WP5 around EX31_RS03025

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
85,211	+				-0.2
85,211	+				+0.5
85,211	+				-0.4
85,348	+		EX31_RS03015	0.27	-0.3
85,348	+		EX31_RS03015	0.27	+0.2
85,349	-		EX31_RS03015	0.27	+0.8
85,352	+		EX31_RS03015	0.27	+0.6
85,352	+		EX31_RS03015	0.27	+0.8
85,352	+		EX31_RS03015	0.27	-0.7
85,426	+		EX31_RS03015	0.38	+0.5
85,427	-		EX31_RS03015	0.38	+1.0
85,532	+		EX31_RS03015	0.54	+0.2
85,532	+		EX31_RS03015	0.54	+0.8
85,532	+		EX31_RS03015	0.54	-0.2
85,532	+		EX31_RS03015	0.54	+0.8
85,533	-		EX31_RS03015	0.54	-0.5
85,558	-		EX31_RS03015	0.58	+1.2
85,585	+		EX31_RS03015	0.62	-0.6
85,617	+		EX31_RS03015	0.67	+0.8
85,617	+		EX31_RS03015	0.67	+1.5
85,617	+		EX31_RS03015	0.67	+1.0
85,617	+		EX31_RS03015	0.67	-0.0
85,618	-		EX31_RS03015	0.67	-0.2
85,618	-		EX31_RS03015	0.67	-0.7
85,980	+		EX31_RS03020	0.45	+0.3
85,980	+		EX31_RS03020	0.45	-0.9
85,980	+		EX31_RS03020	0.45	+1.6
85,980	+		EX31_RS03020	0.45	+1.1
85,980	+		EX31_RS03020	0.45	+0.8
85,981	-		EX31_RS03020	0.45	-0.4
85,999	+		EX31_RS03020	0.51	+0.4
86,104	+		EX31_RS03020	0.83	+0.6
86,104	+		EX31_RS03020	0.83	-1.2
86,105	-		EX31_RS03020	0.83	+1.0
86,105	-		EX31_RS03020	0.83	+0.7
86,107	+		EX31_RS03020	0.84	-0.7
86,107	+		EX31_RS03020	0.84	+0.8
86,210	+				+1.4
86,211	-				+1.6
86,211	-				+0.7
86,270	+				+1.6
86,270	+				+2.4
86,270	+				-1.1
86,270	+				+0.0
86,271	-				+0.1
86,271	-				-0.7
86,271	-				-0.4
86,271	-				+0.6
86,275	-				-1.0
86,378	+		EX31_RS03025	0.12	+1.4
86,379	-		EX31_RS03025	0.12	+1.4
86,385	+		EX31_RS03025	0.13	+0.2
86,385	+		EX31_RS03025	0.13	+1.0
86,386	-		EX31_RS03025	0.13	+0.3
86,583	+		EX31_RS03025	0.27	-1.5
86,584	-		EX31_RS03025	0.28	+0.2
86,584	-		EX31_RS03025	0.28	+1.3
86,584	-		EX31_RS03025	0.28	+0.8
86,586	-		EX31_RS03025	0.28	+0.3
86,630	+		EX31_RS03025	0.31	-0.5
86,630	+		EX31_RS03025	0.31	+1.4
86,630	+		EX31_RS03025	0.31	+2.4
86,630	+		EX31_RS03025	0.31	+0.6
86,630	+		EX31_RS03025	0.31	-0.2
86,630	+		EX31_RS03025	0.31	-0.3
86,630	+		EX31_RS03025	0.31	+0.1
86,630	+		EX31_RS03025	0.31	+1.3
86,630	+		EX31_RS03025	0.31	+1.8
86,630	+		EX31_RS03025	0.31	+1.3
86,630	+		EX31_RS03025	0.31	-1.3
86,630	+		EX31_RS03025	0.31	+0.0
86,630	+		EX31_RS03025	0.31	+0.6
86,630	+		EX31_RS03025	0.31	+0.7
86,630	+		EX31_RS03025	0.31	+0.0
86,631	-		EX31_RS03025	0.31	+0.6
86,631	-		EX31_RS03025	0.31	+1.3
86,631	-		EX31_RS03025	0.31	-0.7
86,631	-		EX31_RS03025	0.31	-0.3
86,631	-		EX31_RS03025	0.31	+0.4
86,631	-		EX31_RS03025	0.31	-0.8
86,631	-		EX31_RS03025	0.31	-0.0
86,631	-		EX31_RS03025	0.31	-0.2
86,631	-		EX31_RS03025	0.31	+0.3
86,631	-		EX31_RS03025	0.31	+1.0
86,631	-		EX31_RS03025	0.31	+0.1
86,631	-		EX31_RS03025	0.31	+0.8
86,631	-		EX31_RS03025	0.31	-0.3
86,631	-		EX31_RS03025	0.31	+0.6
86,665	-		EX31_RS03025	0.33	+1.4
86,770	-		EX31_RS03025	0.41	+0.3
86,782	-		EX31_RS03025	0.42	+0.7
86,792	+		EX31_RS03025	0.43	-0.2
86,793	-		EX31_RS03025	0.43	+2.0
86,793	-		EX31_RS03025	0.43	+1.1
86,807	+		EX31_RS03025	0.44	+1.2
86,808	-		EX31_RS03025	0.44	+0.4
86,808	-		EX31_RS03025	0.44	+0.1
86,839	+		EX31_RS03025	0.46	+2.4
86,904	+		EX31_RS03025	0.51	-1.2
86,904	+		EX31_RS03025	0.51	+0.5
86,905	-		EX31_RS03025	0.51	-0.3
86,905	-		EX31_RS03025	0.51	+0.6
86,970	+		EX31_RS03025	0.56	+1.0
87,042	-		EX31_RS03025	0.61	+0.6
87,100	-		EX31_RS03025	0.65	-0.3
87,100	-		EX31_RS03025	0.65	+0.2
87,100	-		EX31_RS03025	0.65	+1.1
87,103	-		EX31_RS03025	0.66	+1.4
87,103	-		EX31_RS03025	0.66	-0.1
87,103	-		EX31_RS03025	0.66	-0.4
87,103	-		EX31_RS03025	0.66	-0.3
87,103	-		EX31_RS03025	0.66	-0.2
87,148	-		EX31_RS03025	0.69	+0.4
87,148	-		EX31_RS03025	0.69	-0.0
87,148	-		EX31_RS03025	0.69	-1.2
87,148	-		EX31_RS03025	0.69	+0.6
87,172	+		EX31_RS03025	0.71	-2.1
87,172	+		EX31_RS03025	0.71	-0.7
87,247	+		EX31_RS03025	0.76	+2.0
87,247	+		EX31_RS03025	0.76	+0.0
87,247	+		EX31_RS03025	0.76	+1.4
87,248	-		EX31_RS03025	0.76	+0.0
87,251	+		EX31_RS03025	0.77	-1.5
87,251	+		EX31_RS03025	0.77	-0.6
87,251	+		EX31_RS03025	0.77	+1.3
87,251	+		EX31_RS03025	0.77	+1.5
87,252	-		EX31_RS03025	0.77	+1.8
87,252	-		EX31_RS03025	0.77	-2.0
87,280	-		EX31_RS03025	0.79	+1.0
87,280	-		EX31_RS03025	0.79	-0.5
87,314	+		EX31_RS03025	0.81	+0.2
87,314	+		EX31_RS03025	0.81	-0.1
87,315	-		EX31_RS03025	0.81	+1.3
87,315	-		EX31_RS03025	0.81	+0.1
87,315	-		EX31_RS03025	0.81	-0.4
87,318	+		EX31_RS03025	0.81	+0.1
87,318	+		EX31_RS03025	0.81	-0.3
87,318	+		EX31_RS03025	0.81	-0.9
87,319	-		EX31_RS03025	0.81	-1.7
87,320	+		EX31_RS03025	0.82	+0.6
87,320	+		EX31_RS03025	0.82	+0.2
87,321	-		EX31_RS03025	0.82	-0.2
87,321	-		EX31_RS03025	0.82	+1.0
87,404	+		EX31_RS03025	0.88	+0.8
87,404	+		EX31_RS03025	0.88	-0.5
87,404	+		EX31_RS03025	0.88	+0.8
87,404	+		EX31_RS03025	0.88	+1.5
87,404	+		EX31_RS03025	0.88	-0.4
87,405	-		EX31_RS03025	0.88	-0.3
87,405	-		EX31_RS03025	0.88	+0.6
87,453	+				-0.5
87,454	-				+0.3
87,454	-				-0.2
87,454	-				-1.0
87,477	+				-0.5
87,478	-				+0.0
87,478	-				+0.3
87,479	+				+0.8
87,479	+				-1.0
87,479	+				+0.0
87,479	+				+1.1
87,480	-				+1.0
87,480	-				-0.3
87,480	-				+0.6
87,490	+				-1.2
87,491	-				-2.0
87,491	-				-0.7
87,523	-				-0.2
87,526	+				-1.2
87,527	-				-0.3
87,603	+				-0.3
87,603	+				+0.4
87,603	+				+1.7
87,604	-				-0.2
87,604	-				-1.7
87,605	+				+1.0
87,605	+				+0.5
87,605	+				-1.2
87,605	+				+0.5
87,605	+				+1.3
87,605	+				-1.2
87,605	+				-0.3
87,606	-				+2.0
87,606	-				-0.5
87,606	-				+0.5
87,606	-				+0.0
87,606	-				-0.3
87,606	-				+0.8
87,606	-				+2.0
87,606	-				+0.3
87,624	+				-1.1
87,624	+				-1.2
87,624	+				-0.5
87,625	-				-0.5
87,625	-				+0.5
87,625	-				-0.2
87,625	-				+0.8
87,625	-				+2.6
87,661	+				+1.3
87,661	+				+0.6
87,662	-				+0.1
87,662	-				-0.4
87,665	+				+0.3
87,665	+				+0.3
87,665	+				+0.1
87,666	-				+0.2
87,666	-				-0.0
87,666	-				+0.0
87,666	-				-1.0
87,666	-				+0.8
87,666	-				+0.7
87,666	-				-0.5
87,666	-				+0.5
87,670	-				-0.1
87,677	-				-0.1
87,695	+				-0.2
87,696	-				-0.4
87,696	-				-0.2
87,696	-				+0.1
87,711	+				+1.3
87,772	-				-0.1
87,772	-				-0.6
87,784	+				-0.4
87,784	+				+0.8
87,784	+				-0.4
87,784	+				+0.1
87,784	+				-0.9
87,785	-				+0.7
87,785	-				+1.4
87,785	-				+0.8
87,785	-				+1.1
87,785	-				-1.2
87,785	-				+1.6
87,797	+				+1.3
87,798	-				+1.3
87,809	-				+1.2
87,815	-				+0.9
87,815	-				+0.8
87,827	+				+1.0
87,827	+				-0.4
87,828	-				-1.7
87,828	-				+0.8
87,828	-				-1.7
87,828	-				+0.6
87,828	-				+0.0
87,828	-				+0.1
87,828	-				-0.7
87,828	-				-0.0
87,832	-				-0.3
87,832	-				+1.0
87,857	+				-0.7
87,857	+				-1.9
87,858	-				+0.4
87,858	-				-0.0
87,858	-				-0.2
87,905	+				+0.8
87,928	+				+0.3
87,944	+				+1.5
87,981	-				-0.0
87,983	+				+0.2
87,983	+				-1.7
87,984	-				+0.9
87,996	+				-0.2
87,996	+				-1.4
87,996	+				+0.5
87,996	+				+0.2
87,996	+				+0.8
87,996	+				+1.5
87,997	-				-0.7
87,997	-				-0.4
88,032	+				+0.5
88,111	-				-0.0
88,121	+				+0.2
88,123	+				-0.3
88,123	+				+0.4
88,123	+				+0.4
88,123	+				+0.8
88,123	+				-0.3
88,124	-				+0.8
88,138	+				+0.4
88,139	-				-1.2
88,139	-				-1.7
88,190	-				-0.7
88,190	-				-1.7
88,190	-				-0.9
88,210	+				-2.5
88,264	+		EX31_RS03030	0.11	-1.5
88,264	+		EX31_RS03030	0.11	-0.4
88,264	+		EX31_RS03030	0.11	-2.9
88,264	+		EX31_RS03030	0.11	-1.5
88,264	+		EX31_RS03030	0.11	-2.0
88,265	-		EX31_RS03030	0.11	-1.5
88,265	-		EX31_RS03030	0.11	-2.6
88,265	-		EX31_RS03030	0.11	-2.7
88,265	-		EX31_RS03030	0.11	-3.1
88,277	+		EX31_RS03030	0.12	-0.5
88,277	+		EX31_RS03030	0.12	-1.9
88,277	+		EX31_RS03030	0.12	-2.2
88,277	+		EX31_RS03030	0.12	-1.8
88,277	+		EX31_RS03030	0.12	-3.7
88,277	+		EX31_RS03030	0.12	-2.3
88,277	+		EX31_RS03030	0.12	-2.6
88,277	+		EX31_RS03030	0.12	-0.7
88,278	-		EX31_RS03030	0.12	-0.5
88,278	-		EX31_RS03030	0.12	-2.5
88,278	-		EX31_RS03030	0.12	-2.3
88,278	-		EX31_RS03030	0.12	-0.2
88,354	+		EX31_RS03030	0.22	-1.5
88,364	+		EX31_RS03030	0.23	-1.7
88,365	-		EX31_RS03030	0.23	-1.3
88,429	+		EX31_RS03030	0.31	-1.5
88,430	-		EX31_RS03030	0.31	-2.3
88,443	+		EX31_RS03030	0.33	-3.5
88,444	-		EX31_RS03030	0.33	+0.3
88,444	-		EX31_RS03030	0.33	-0.4
88,519	+		EX31_RS03030	0.42	-2.0
88,519	+		EX31_RS03030	0.42	-1.8