Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02500 and EX31_RS02505 are separated by 15 nucleotides EX31_RS02505 and EX31_RS02510 are separated by 9 nucleotides EX31_RS02510 and EX31_RS02515 overlap by 44 nucleotides
EX31_RS02500: EX31_RS02500 - LLM class flavin-dependent oxidoreductase, at 530,041 to 531,096
_RS02500
EX31_RS02505: EX31_RS02505 - hypothetical protein, at 531,112 to 531,768
_RS02505
EX31_RS02510: EX31_RS02510 - 4'-phosphopantetheinyl transferase superfamily protein, at 531,778 to 532,467
_RS02510
EX31_RS02515: EX31_RS02515 - PAS domain-containing protein, at 532,424 to 533,737
_RS02515
Position (kb) 531
532
533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 530.817 kb on + strand, within EX31_RS02500 at 530.838 kb on + strand, within EX31_RS02500 at 530.838 kb on + strand, within EX31_RS02500 at 530.838 kb on + strand, within EX31_RS02500 at 530.838 kb on + strand, within EX31_RS02500 at 530.908 kb on + strand, within EX31_RS02500 at 530.908 kb on + strand, within EX31_RS02500 at 530.935 kb on + strand, within EX31_RS02500 at 530.936 kb on - strand, within EX31_RS02500 at 531.084 kb on + strand at 531.084 kb on + strand at 531.085 kb on - strand at 531.108 kb on + strand at 531.108 kb on + strand at 531.243 kb on + strand, within EX31_RS02505 at 531.244 kb on - strand, within EX31_RS02505 at 531.244 kb on - strand, within EX31_RS02505 at 531.244 kb on - strand, within EX31_RS02505 at 531.265 kb on - strand, within EX31_RS02505 at 531.297 kb on + strand, within EX31_RS02505 at 531.384 kb on + strand, within EX31_RS02505 at 531.394 kb on + strand, within EX31_RS02505 at 531.394 kb on + strand, within EX31_RS02505 at 531.395 kb on - strand, within EX31_RS02505 at 531.396 kb on + strand, within EX31_RS02505 at 531.396 kb on + strand, within EX31_RS02505 at 531.397 kb on - strand, within EX31_RS02505 at 531.397 kb on - strand, within EX31_RS02505 at 531.608 kb on + strand, within EX31_RS02505 at 531.608 kb on + strand, within EX31_RS02505 at 531.608 kb on + strand, within EX31_RS02505 at 531.609 kb on - strand, within EX31_RS02505 at 531.645 kb on + strand, within EX31_RS02505 at 531.799 kb on - strand at 531.860 kb on + strand, within EX31_RS02510 at 531.860 kb on + strand, within EX31_RS02510 at 531.892 kb on + strand, within EX31_RS02510 at 531.892 kb on + strand, within EX31_RS02510 at 531.893 kb on - strand, within EX31_RS02510 at 531.893 kb on - strand, within EX31_RS02510 at 531.893 kb on - strand, within EX31_RS02510 at 531.913 kb on - strand, within EX31_RS02510 at 531.925 kb on + strand, within EX31_RS02510 at 531.925 kb on + strand, within EX31_RS02510 at 531.925 kb on + strand, within EX31_RS02510 at 531.981 kb on + strand, within EX31_RS02510 at 531.982 kb on - strand, within EX31_RS02510 at 532.211 kb on - strand, within EX31_RS02510 at 532.276 kb on + strand, within EX31_RS02510 at 532.276 kb on + strand, within EX31_RS02510 at 532.276 kb on + strand, within EX31_RS02510 at 532.277 kb on - strand, within EX31_RS02510 at 532.277 kb on - strand, within EX31_RS02510 at 532.277 kb on - strand, within EX31_RS02510 at 532.558 kb on + strand, within EX31_RS02515 at 532.561 kb on - strand, within EX31_RS02515 at 532.654 kb on + strand, within EX31_RS02515 at 533.021 kb on + strand, within EX31_RS02515 at 533.135 kb on - strand, within EX31_RS02515 at 533.136 kb on + strand, within EX31_RS02515 at 533.136 kb on + strand, within EX31_RS02515 at 533.136 kb on + strand, within EX31_RS02515 at 533.136 kb on + strand, within EX31_RS02515 at 533.136 kb on + strand, within EX31_RS02515 at 533.136 kb on + strand, within EX31_RS02515 at 533.137 kb on - strand, within EX31_RS02515 at 533.137 kb on - strand, within EX31_RS02515 at 533.137 kb on - strand, within EX31_RS02515 at 533.137 kb on - strand, within EX31_RS02515 at 533.137 kb on - strand, within EX31_RS02515 at 533.155 kb on + strand, within EX31_RS02515 at 533.156 kb on - strand, within EX31_RS02515 at 533.156 kb on - strand, within EX31_RS02515 at 533.156 kb on - strand, within EX31_RS02515 at 533.302 kb on + strand, within EX31_RS02515 at 533.303 kb on - strand, within EX31_RS02515 at 533.303 kb on - strand, within EX31_RS02515 at 533.414 kb on + strand, within EX31_RS02515
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 530,817 + EX31_RS02500 0.73 -2.7 530,838 + EX31_RS02500 0.75 +2.0 530,838 + EX31_RS02500 0.75 -0.5 530,838 + EX31_RS02500 0.75 +0.9 530,838 + EX31_RS02500 0.75 +0.3 530,908 + EX31_RS02500 0.82 +0.7 530,908 + EX31_RS02500 0.82 +1.1 530,935 + EX31_RS02500 0.85 +0.5 530,936 - EX31_RS02500 0.85 +0.4 531,084 + +1.1 531,084 + +0.8 531,085 - +2.7 531,108 + -0.3 531,108 + +0.1 531,243 + EX31_RS02505 0.20 +2.0 531,244 - EX31_RS02505 0.20 -0.3 531,244 - EX31_RS02505 0.20 +0.7 531,244 - EX31_RS02505 0.20 -2.3 531,265 - EX31_RS02505 0.23 -2.1 531,297 + EX31_RS02505 0.28 -0.0 531,384 + EX31_RS02505 0.41 +0.7 531,394 + EX31_RS02505 0.43 +2.3 531,394 + EX31_RS02505 0.43 -1.2 531,395 - EX31_RS02505 0.43 -0.3 531,396 + EX31_RS02505 0.43 -1.2 531,396 + EX31_RS02505 0.43 +0.1 531,397 - EX31_RS02505 0.43 -0.9 531,397 - EX31_RS02505 0.43 -0.3 531,608 + EX31_RS02505 0.75 -0.9 531,608 + EX31_RS02505 0.75 -1.2 531,608 + EX31_RS02505 0.75 -0.3 531,609 - EX31_RS02505 0.76 -0.9 531,645 + EX31_RS02505 0.81 +0.5 531,799 - +0.7 531,860 + EX31_RS02510 0.12 +0.7 531,860 + EX31_RS02510 0.12 +1.1 531,892 + EX31_RS02510 0.17 -0.2 531,892 + EX31_RS02510 0.17 +0.9 531,893 - EX31_RS02510 0.17 +0.9 531,893 - EX31_RS02510 0.17 +0.9 531,893 - EX31_RS02510 0.17 -1.6 531,913 - EX31_RS02510 0.20 -0.6 531,925 + EX31_RS02510 0.21 +0.1 531,925 + EX31_RS02510 0.21 +1.7 531,925 + EX31_RS02510 0.21 +0.8 531,981 + EX31_RS02510 0.29 +0.2 531,982 - EX31_RS02510 0.30 -0.9 532,211 - EX31_RS02510 0.63 -2.4 532,276 + EX31_RS02510 0.72 +1.1 532,276 + EX31_RS02510 0.72 +1.3 532,276 + EX31_RS02510 0.72 +1.2 532,277 - EX31_RS02510 0.72 +0.1 532,277 - EX31_RS02510 0.72 -0.1 532,277 - EX31_RS02510 0.72 -0.0 532,558 + EX31_RS02515 0.10 -2.3 532,561 - EX31_RS02515 0.10 -2.3 532,654 + EX31_RS02515 0.18 -1.6 533,021 + EX31_RS02515 0.45 -2.1 533,135 - EX31_RS02515 0.54 -0.3 533,136 + EX31_RS02515 0.54 -1.6 533,136 + EX31_RS02515 0.54 -1.3 533,136 + EX31_RS02515 0.54 -2.1 533,136 + EX31_RS02515 0.54 -0.3 533,136 + EX31_RS02515 0.54 -0.9 533,136 + EX31_RS02515 0.54 -1.6 533,137 - EX31_RS02515 0.54 -1.3 533,137 - EX31_RS02515 0.54 -1.6 533,137 - EX31_RS02515 0.54 -3.4 533,137 - EX31_RS02515 0.54 -0.9 533,137 - EX31_RS02515 0.54 -1.3 533,155 + EX31_RS02515 0.56 -1.6 533,156 - EX31_RS02515 0.56 -2.3 533,156 - EX31_RS02515 0.56 -1.3 533,156 - EX31_RS02515 0.56 -1.9 533,302 + EX31_RS02515 0.67 -2.7 533,303 - EX31_RS02515 0.67 -1.3 533,303 - EX31_RS02515 0.67 -0.3 533,414 + EX31_RS02515 0.75 -2.1
Or see this region's nucleotide sequence