Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02185 and EX31_RS02190 overlap by 4 nucleotides EX31_RS02190 and EX31_RS02195 are separated by 244 nucleotides EX31_RS02195 and EX31_RS02200 are separated by 207 nucleotides
EX31_RS02185: EX31_RS02185 - glycoside hydrolase family 31 protein, at 474,979 to 477,018
_RS02185
EX31_RS02190: EX31_RS02190 - transporter, at 477,015 to 478,394
_RS02190
EX31_RS02195: EX31_RS02195 - MarR family transcriptional regulator, at 478,639 to 479,058
_RS02195
EX31_RS02200: EX31_RS02200 - Hcp family type VI secretion system effector, at 479,266 to 479,748
_RS02200
Position (kb) 477
478
479 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 476.025 kb on + strand, within EX31_RS02185 at 476.026 kb on - strand, within EX31_RS02185 at 476.070 kb on + strand, within EX31_RS02185 at 476.070 kb on + strand, within EX31_RS02185 at 476.071 kb on - strand, within EX31_RS02185 at 476.071 kb on - strand, within EX31_RS02185 at 476.071 kb on - strand, within EX31_RS02185 at 476.071 kb on - strand, within EX31_RS02185 at 476.071 kb on - strand, within EX31_RS02185 at 476.071 kb on - strand, within EX31_RS02185 at 476.214 kb on - strand, within EX31_RS02185 at 476.286 kb on - strand, within EX31_RS02185 at 476.324 kb on + strand, within EX31_RS02185 at 476.324 kb on + strand, within EX31_RS02185 at 476.325 kb on - strand, within EX31_RS02185 at 476.481 kb on + strand, within EX31_RS02185 at 476.569 kb on - strand, within EX31_RS02185 at 476.611 kb on + strand, within EX31_RS02185 at 476.612 kb on - strand, within EX31_RS02185 at 476.675 kb on + strand, within EX31_RS02185 at 476.675 kb on + strand, within EX31_RS02185 at 476.676 kb on - strand, within EX31_RS02185 at 476.676 kb on - strand, within EX31_RS02185 at 476.676 kb on - strand, within EX31_RS02185 at 476.676 kb on - strand, within EX31_RS02185 at 476.676 kb on - strand, within EX31_RS02185 at 476.676 kb on - strand, within EX31_RS02185 at 476.680 kb on - strand, within EX31_RS02185 at 476.680 kb on - strand, within EX31_RS02185 at 476.733 kb on - strand, within EX31_RS02185 at 476.764 kb on - strand, within EX31_RS02185 at 476.764 kb on - strand, within EX31_RS02185 at 476.765 kb on + strand, within EX31_RS02185 at 476.766 kb on - strand, within EX31_RS02185 at 476.788 kb on - strand, within EX31_RS02185 at 477.032 kb on + strand at 477.033 kb on - strand at 477.033 kb on - strand at 477.110 kb on + strand at 477.111 kb on - strand at 477.118 kb on + strand at 477.119 kb on - strand at 477.119 kb on - strand at 477.119 kb on - strand at 477.344 kb on - strand, within EX31_RS02190 at 477.403 kb on + strand, within EX31_RS02190 at 477.404 kb on - strand, within EX31_RS02190 at 477.599 kb on + strand, within EX31_RS02190 at 477.599 kb on + strand, within EX31_RS02190 at 477.599 kb on + strand, within EX31_RS02190 at 477.600 kb on - strand, within EX31_RS02190 at 477.600 kb on - strand, within EX31_RS02190 at 477.604 kb on + strand, within EX31_RS02190 at 477.604 kb on + strand, within EX31_RS02190 at 477.604 kb on + strand, within EX31_RS02190 at 477.622 kb on + strand, within EX31_RS02190 at 477.625 kb on + strand, within EX31_RS02190 at 477.625 kb on + strand, within EX31_RS02190 at 477.625 kb on + strand, within EX31_RS02190 at 477.626 kb on - strand, within EX31_RS02190 at 477.626 kb on - strand, within EX31_RS02190 at 477.626 kb on - strand, within EX31_RS02190 at 477.634 kb on + strand, within EX31_RS02190 at 477.635 kb on - strand, within EX31_RS02190 at 477.635 kb on - strand, within EX31_RS02190 at 477.635 kb on - strand, within EX31_RS02190 at 477.635 kb on - strand, within EX31_RS02190 at 477.637 kb on + strand, within EX31_RS02190 at 477.638 kb on - strand, within EX31_RS02190 at 477.724 kb on - strand, within EX31_RS02190 at 477.724 kb on - strand, within EX31_RS02190 at 477.930 kb on - strand, within EX31_RS02190 at 477.962 kb on + strand, within EX31_RS02190 at 477.963 kb on - strand, within EX31_RS02190 at 477.972 kb on - strand, within EX31_RS02190 at 477.983 kb on + strand, within EX31_RS02190 at 477.983 kb on + strand, within EX31_RS02190 at 478.017 kb on - strand, within EX31_RS02190 at 478.027 kb on + strand, within EX31_RS02190 at 478.028 kb on - strand, within EX31_RS02190 at 478.028 kb on - strand, within EX31_RS02190 at 478.028 kb on - strand, within EX31_RS02190 at 478.028 kb on - strand, within EX31_RS02190 at 478.048 kb on + strand, within EX31_RS02190 at 478.048 kb on + strand, within EX31_RS02190 at 478.049 kb on - strand, within EX31_RS02190 at 478.049 kb on - strand, within EX31_RS02190 at 478.049 kb on - strand, within EX31_RS02190 at 478.049 kb on - strand, within EX31_RS02190 at 478.063 kb on + strand, within EX31_RS02190 at 478.064 kb on - strand, within EX31_RS02190 at 478.064 kb on - strand, within EX31_RS02190 at 478.074 kb on - strand, within EX31_RS02190 at 478.105 kb on + strand, within EX31_RS02190 at 478.105 kb on + strand, within EX31_RS02190 at 478.106 kb on - strand, within EX31_RS02190 at 478.114 kb on - strand, within EX31_RS02190 at 478.135 kb on - strand, within EX31_RS02190 at 478.135 kb on - strand, within EX31_RS02190 at 478.151 kb on + strand, within EX31_RS02190 at 478.151 kb on + strand, within EX31_RS02190 at 478.151 kb on + strand, within EX31_RS02190 at 478.152 kb on - strand, within EX31_RS02190 at 478.152 kb on - strand, within EX31_RS02190 at 478.152 kb on - strand, within EX31_RS02190 at 478.152 kb on - strand, within EX31_RS02190 at 478.152 kb on - strand, within EX31_RS02190 at 478.153 kb on + strand, within EX31_RS02190 at 478.154 kb on - strand, within EX31_RS02190 at 478.291 kb on + strand at 478.374 kb on + strand at 478.414 kb on - strand at 478.460 kb on + strand at 478.462 kb on + strand at 478.463 kb on - strand at 478.463 kb on - strand at 478.463 kb on - strand at 478.463 kb on - strand at 478.463 kb on - strand at 478.471 kb on + strand at 478.489 kb on - strand at 478.498 kb on + strand at 478.499 kb on - strand at 478.586 kb on - strand at 478.599 kb on + strand at 478.604 kb on + strand at 478.604 kb on + strand at 478.605 kb on - strand at 478.619 kb on - strand at 478.893 kb on + strand, within EX31_RS02195 at 478.893 kb on + strand, within EX31_RS02195 at 478.908 kb on + strand, within EX31_RS02195 at 478.911 kb on + strand, within EX31_RS02195 at 478.911 kb on + strand, within EX31_RS02195 at 478.912 kb on - strand, within EX31_RS02195 at 478.970 kb on + strand, within EX31_RS02195 at 478.970 kb on + strand, within EX31_RS02195 at 478.970 kb on + strand, within EX31_RS02195 at 478.971 kb on - strand, within EX31_RS02195 at 479.037 kb on + strand at 479.038 kb on - strand at 479.056 kb on + strand at 479.057 kb on - strand at 479.067 kb on + strand at 479.203 kb on + strand at 479.234 kb on + strand at 479.234 kb on + strand at 479.234 kb on + strand at 479.234 kb on + strand at 479.234 kb on + strand at 479.235 kb on - strand at 479.235 kb on - strand at 479.236 kb on + strand at 479.237 kb on - strand at 479.282 kb on - strand at 479.285 kb on + strand at 479.387 kb on + strand, within EX31_RS02200 at 479.391 kb on + strand, within EX31_RS02200 at 479.391 kb on + strand, within EX31_RS02200
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 476,025 + EX31_RS02185 0.51 +0.7 476,026 - EX31_RS02185 0.51 -1.3 476,070 + EX31_RS02185 0.53 -1.7 476,070 + EX31_RS02185 0.53 +0.3 476,071 - EX31_RS02185 0.54 -1.9 476,071 - EX31_RS02185 0.54 -2.2 476,071 - EX31_RS02185 0.54 -0.2 476,071 - EX31_RS02185 0.54 -0.4 476,071 - EX31_RS02185 0.54 -0.3 476,071 - EX31_RS02185 0.54 +2.5 476,214 - EX31_RS02185 0.61 -2.1 476,286 - EX31_RS02185 0.64 +0.2 476,324 + EX31_RS02185 0.66 -0.9 476,324 + EX31_RS02185 0.66 -0.9 476,325 - EX31_RS02185 0.66 +0.7 476,481 + EX31_RS02185 0.74 -0.1 476,569 - EX31_RS02185 0.78 +1.7 476,611 + EX31_RS02185 0.80 +0.3 476,612 - EX31_RS02185 0.80 -0.3 476,675 + EX31_RS02185 0.83 +1.9 476,675 + EX31_RS02185 0.83 +0.7 476,676 - EX31_RS02185 0.83 +0.2 476,676 - EX31_RS02185 0.83 -0.9 476,676 - EX31_RS02185 0.83 +0.3 476,676 - EX31_RS02185 0.83 +3.5 476,676 - EX31_RS02185 0.83 -0.6 476,676 - EX31_RS02185 0.83 +0.0 476,680 - EX31_RS02185 0.83 -2.1 476,680 - EX31_RS02185 0.83 -1.4 476,733 - EX31_RS02185 0.86 +1.9 476,764 - EX31_RS02185 0.88 -0.3 476,764 - EX31_RS02185 0.88 +1.3 476,765 + EX31_RS02185 0.88 +2.3 476,766 - EX31_RS02185 0.88 -1.0 476,788 - EX31_RS02185 0.89 -0.1 477,032 + +1.3 477,033 - +0.2 477,033 - -0.9 477,110 + -0.8 477,111 - +0.7 477,118 + -1.1 477,119 - -0.1 477,119 - +0.1 477,119 - +0.1 477,344 - EX31_RS02190 0.24 +1.2 477,403 + EX31_RS02190 0.28 -1.0 477,404 - EX31_RS02190 0.28 +0.5 477,599 + EX31_RS02190 0.42 -1.1 477,599 + EX31_RS02190 0.42 +1.9 477,599 + EX31_RS02190 0.42 +0.1 477,600 - EX31_RS02190 0.42 -0.1 477,600 - EX31_RS02190 0.42 -0.8 477,604 + EX31_RS02190 0.43 -0.4 477,604 + EX31_RS02190 0.43 -0.9 477,604 + EX31_RS02190 0.43 -0.6 477,622 + EX31_RS02190 0.44 -0.4 477,625 + EX31_RS02190 0.44 -1.0 477,625 + EX31_RS02190 0.44 -0.3 477,625 + EX31_RS02190 0.44 -1.3 477,626 - EX31_RS02190 0.44 +0.2 477,626 - EX31_RS02190 0.44 +0.1 477,626 - EX31_RS02190 0.44 +1.5 477,634 + EX31_RS02190 0.45 -0.3 477,635 - EX31_RS02190 0.45 +1.9 477,635 - EX31_RS02190 0.45 +2.5 477,635 - EX31_RS02190 0.45 -2.6 477,635 - EX31_RS02190 0.45 -1.6 477,637 + EX31_RS02190 0.45 +0.5 477,638 - EX31_RS02190 0.45 -0.3 477,724 - EX31_RS02190 0.51 -0.7 477,724 - EX31_RS02190 0.51 +1.9 477,930 - EX31_RS02190 0.66 -0.0 477,962 + EX31_RS02190 0.69 +0.6 477,963 - EX31_RS02190 0.69 -0.6 477,972 - EX31_RS02190 0.69 -0.0 477,983 + EX31_RS02190 0.70 +1.2 477,983 + EX31_RS02190 0.70 -0.8 478,017 - EX31_RS02190 0.73 -1.6 478,027 + EX31_RS02190 0.73 +0.9 478,028 - EX31_RS02190 0.73 +0.5 478,028 - EX31_RS02190 0.73 -1.9 478,028 - EX31_RS02190 0.73 +0.7 478,028 - EX31_RS02190 0.73 -1.1 478,048 + EX31_RS02190 0.75 +1.1 478,048 + EX31_RS02190 0.75 +0.2 478,049 - EX31_RS02190 0.75 -1.6 478,049 - EX31_RS02190 0.75 +0.7 478,049 - EX31_RS02190 0.75 -0.9 478,049 - EX31_RS02190 0.75 +0.7 478,063 + EX31_RS02190 0.76 +0.4 478,064 - EX31_RS02190 0.76 -0.3 478,064 - EX31_RS02190 0.76 -0.3 478,074 - EX31_RS02190 0.77 -0.3 478,105 + EX31_RS02190 0.79 -2.3 478,105 + EX31_RS02190 0.79 +0.3 478,106 - EX31_RS02190 0.79 -0.3 478,114 - EX31_RS02190 0.80 +1.3 478,135 - EX31_RS02190 0.81 +0.7 478,135 - EX31_RS02190 0.81 -2.4 478,151 + EX31_RS02190 0.82 +0.7 478,151 + EX31_RS02190 0.82 +1.5 478,151 + EX31_RS02190 0.82 +2.2 478,152 - EX31_RS02190 0.82 -1.0 478,152 - EX31_RS02190 0.82 +0.0 478,152 - EX31_RS02190 0.82 +1.0 478,152 - EX31_RS02190 0.82 -0.2 478,152 - EX31_RS02190 0.82 +2.0 478,153 + EX31_RS02190 0.82 -0.5 478,154 - EX31_RS02190 0.83 +1.7 478,291 + +1.5 478,374 + +0.7 478,414 - -0.9 478,460 + +0.1 478,462 + +0.7 478,463 - -0.4 478,463 - +0.3 478,463 - +0.7 478,463 - +0.2 478,463 - +1.7 478,471 + +0.7 478,489 - -2.6 478,498 + -0.6 478,499 - -0.3 478,586 - +1.5 478,599 + +3.3 478,604 + +0.7 478,604 + -1.4 478,605 - +0.1 478,619 - +1.7 478,893 + EX31_RS02195 0.60 +0.7 478,893 + EX31_RS02195 0.60 -0.9 478,908 + EX31_RS02195 0.64 +0.2 478,911 + EX31_RS02195 0.65 +0.5 478,911 + EX31_RS02195 0.65 +0.1 478,912 - EX31_RS02195 0.65 +0.3 478,970 + EX31_RS02195 0.79 -1.6 478,970 + EX31_RS02195 0.79 +0.7 478,970 + EX31_RS02195 0.79 +0.7 478,971 - EX31_RS02195 0.79 -0.2 479,037 + -0.2 479,038 - -0.3 479,056 + +1.9 479,057 - -0.3 479,067 + -1.6 479,203 + -0.0 479,234 + +0.9 479,234 + +1.0 479,234 + +1.1 479,234 + +0.5 479,234 + +1.3 479,235 - +0.5 479,235 - +0.4 479,236 + +0.1 479,237 - -1.4 479,282 - +1.7 479,285 + -0.4 479,387 + EX31_RS02200 0.25 +1.4 479,391 + EX31_RS02200 0.26 -1.6 479,391 + EX31_RS02200 0.26 -0.0
Or see this region's nucleotide sequence