Strain Fitness in Rahnella sp. WP5 around EX31_RS02185

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02175 and EX31_RS02180 are separated by 18 nucleotidesEX31_RS02180 and EX31_RS02185 are separated by 278 nucleotidesEX31_RS02185 and EX31_RS02190 overlap by 4 nucleotides EX31_RS02175: EX31_RS02175 - peptide-methionine (S)-S-oxide reductase MsrA, at 473,447 to 474,175 _RS02175 EX31_RS02180: EX31_RS02180 - peptide-methionine (R)-S-oxide reductase MsrB, at 474,194 to 474,700 _RS02180 EX31_RS02185: EX31_RS02185 - glycoside hydrolase family 31 protein, at 474,979 to 477,018 _RS02185 EX31_RS02190: EX31_RS02190 - transporter, at 477,015 to 478,394 _RS02190 Position (kb) 474 475 476 477 478Strain fitness (log2 ratio) -2 -1 0 1 2 3at 474.196 kb on - strandat 474.479 kb on + strand, within EX31_RS02180at 474.492 kb on + strand, within EX31_RS02180at 474.597 kb on - strand, within EX31_RS02180at 474.739 kb on + strandat 474.907 kb on + strandat 474.908 kb on - strandat 474.908 kb on - strandat 474.940 kb on + strandat 474.941 kb on - strandat 474.941 kb on - strandat 475.148 kb on + strandat 475.148 kb on + strandat 475.149 kb on - strandat 475.149 kb on - strandat 475.149 kb on - strandat 475.170 kb on + strandat 475.171 kb on - strandat 475.187 kb on + strand, within EX31_RS02185at 475.187 kb on + strand, within EX31_RS02185at 475.187 kb on + strand, within EX31_RS02185at 475.188 kb on - strand, within EX31_RS02185at 475.188 kb on - strand, within EX31_RS02185at 475.188 kb on - strand, within EX31_RS02185at 475.188 kb on - strand, within EX31_RS02185at 475.233 kb on - strand, within EX31_RS02185at 475.295 kb on + strand, within EX31_RS02185at 475.296 kb on - strand, within EX31_RS02185at 475.296 kb on - strand, within EX31_RS02185at 475.296 kb on - strand, within EX31_RS02185at 475.296 kb on - strand, within EX31_RS02185at 475.453 kb on + strand, within EX31_RS02185at 475.453 kb on + strand, within EX31_RS02185at 475.453 kb on + strand, within EX31_RS02185at 475.454 kb on - strand, within EX31_RS02185at 475.454 kb on - strand, within EX31_RS02185at 475.454 kb on - strand, within EX31_RS02185at 475.475 kb on - strand, within EX31_RS02185at 475.475 kb on - strand, within EX31_RS02185at 475.767 kb on - strand, within EX31_RS02185at 475.808 kb on + strand, within EX31_RS02185at 475.809 kb on - strand, within EX31_RS02185at 475.809 kb on - strand, within EX31_RS02185at 475.812 kb on + strand, within EX31_RS02185at 475.824 kb on - strand, within EX31_RS02185at 475.880 kb on + strand, within EX31_RS02185at 475.881 kb on - strand, within EX31_RS02185at 475.881 kb on - strand, within EX31_RS02185at 475.883 kb on + strand, within EX31_RS02185at 475.884 kb on - strand, within EX31_RS02185at 475.948 kb on - strand, within EX31_RS02185at 475.948 kb on - strand, within EX31_RS02185at 476.025 kb on + strand, within EX31_RS02185at 476.026 kb on - strand, within EX31_RS02185at 476.070 kb on + strand, within EX31_RS02185at 476.070 kb on + strand, within EX31_RS02185at 476.071 kb on - strand, within EX31_RS02185at 476.071 kb on - strand, within EX31_RS02185at 476.071 kb on - strand, within EX31_RS02185at 476.071 kb on - strand, within EX31_RS02185at 476.071 kb on - strand, within EX31_RS02185at 476.071 kb on - strand, within EX31_RS02185at 476.214 kb on - strand, within EX31_RS02185at 476.286 kb on - strand, within EX31_RS02185at 476.324 kb on + strand, within EX31_RS02185at 476.324 kb on + strand, within EX31_RS02185at 476.325 kb on - strand, within EX31_RS02185at 476.481 kb on + strand, within EX31_RS02185at 476.569 kb on - strand, within EX31_RS02185at 476.611 kb on + strand, within EX31_RS02185at 476.612 kb on - strand, within EX31_RS02185at 476.675 kb on + strand, within EX31_RS02185at 476.675 kb on + strand, within EX31_RS02185at 476.676 kb on - strand, within EX31_RS02185at 476.676 kb on - strand, within EX31_RS02185at 476.676 kb on - strand, within EX31_RS02185at 476.676 kb on - strand, within EX31_RS02185at 476.676 kb on - strand, within EX31_RS02185at 476.676 kb on - strand, within EX31_RS02185at 476.680 kb on - strand, within EX31_RS02185at 476.680 kb on - strand, within EX31_RS02185at 476.733 kb on - strand, within EX31_RS02185at 476.764 kb on - strand, within EX31_RS02185at 476.764 kb on - strand, within EX31_RS02185at 476.765 kb on + strand, within EX31_RS02185at 476.766 kb on - strand, within EX31_RS02185at 476.788 kb on - strand, within EX31_RS02185at 477.032 kb on + strandat 477.033 kb on - strandat 477.033 kb on - strandat 477.110 kb on + strandat 477.111 kb on - strandat 477.118 kb on + strandat 477.119 kb on - strandat 477.119 kb on - strandat 477.119 kb on - strandat 477.344 kb on - strand, within EX31_RS02190at 477.403 kb on + strand, within EX31_RS02190at 477.404 kb on - strand, within EX31_RS02190at 477.599 kb on + strand, within EX31_RS02190at 477.599 kb on + strand, within EX31_RS02190at 477.599 kb on + strand, within EX31_RS02190at 477.600 kb on - strand, within EX31_RS02190at 477.600 kb on - strand, within EX31_RS02190at 477.604 kb on + strand, within EX31_RS02190at 477.604 kb on + strand, within EX31_RS02190at 477.604 kb on + strand, within EX31_RS02190at 477.622 kb on + strand, within EX31_RS02190at 477.625 kb on + strand, within EX31_RS02190at 477.625 kb on + strand, within EX31_RS02190at 477.625 kb on + strand, within EX31_RS02190at 477.626 kb on - strand, within EX31_RS02190at 477.626 kb on - strand, within EX31_RS02190at 477.626 kb on - strand, within EX31_RS02190at 477.634 kb on + strand, within EX31_RS02190at 477.635 kb on - strand, within EX31_RS02190at 477.635 kb on - strand, within EX31_RS02190at 477.635 kb on - strand, within EX31_RS02190at 477.635 kb on - strand, within EX31_RS02190at 477.637 kb on + strand, within EX31_RS02190at 477.638 kb on - strand, within EX31_RS02190at 477.724 kb on - strand, within EX31_RS02190at 477.724 kb on - strand, within EX31_RS02190at 477.930 kb on - strand, within EX31_RS02190at 477.962 kb on + strand, within EX31_RS02190at 477.963 kb on - strand, within EX31_RS02190at 477.972 kb on - strand, within EX31_RS02190at 477.983 kb on + strand, within EX31_RS02190at 477.983 kb on + strand, within EX31_RS02190at 478.017 kb on - strand, within EX31_RS02190

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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474,196 - +0.7
474,479 + EX31_RS02180 0.56 -0.4
474,492 + EX31_RS02180 0.59 +1.3
474,597 - EX31_RS02180 0.79 +2.9
474,739 + +0.2
474,907 + +0.7
474,908 - -1.1
474,908 - +1.5
474,940 + +1.7
474,941 - +0.7
474,941 - -0.0
475,148 + +1.6
475,148 + +0.7
475,149 - -0.1
475,149 - -1.0
475,149 - +0.1
475,170 + -0.9
475,171 - +0.3
475,187 + EX31_RS02185 0.10 +2.5
475,187 + EX31_RS02185 0.10 -1.1
475,187 + EX31_RS02185 0.10 -0.5
475,188 - EX31_RS02185 0.10 -0.7
475,188 - EX31_RS02185 0.10 +0.3
475,188 - EX31_RS02185 0.10 -0.3
475,188 - EX31_RS02185 0.10 +1.0
475,233 - EX31_RS02185 0.12 +0.3
475,295 + EX31_RS02185 0.15 +0.7
475,296 - EX31_RS02185 0.16 +2.7
475,296 - EX31_RS02185 0.16 +1.0
475,296 - EX31_RS02185 0.16 +1.3
475,296 - EX31_RS02185 0.16 +0.0
475,453 + EX31_RS02185 0.23 -0.3
475,453 + EX31_RS02185 0.23 +0.5
475,453 + EX31_RS02185 0.23 +0.1
475,454 - EX31_RS02185 0.23 -0.9
475,454 - EX31_RS02185 0.23 +0.6
475,454 - EX31_RS02185 0.23 +0.7
475,475 - EX31_RS02185 0.24 -1.9
475,475 - EX31_RS02185 0.24 +0.1
475,767 - EX31_RS02185 0.39 +0.9
475,808 + EX31_RS02185 0.41 +3.0
475,809 - EX31_RS02185 0.41 +0.4
475,809 - EX31_RS02185 0.41 -0.1
475,812 + EX31_RS02185 0.41 +1.3
475,824 - EX31_RS02185 0.41 -0.3
475,880 + EX31_RS02185 0.44 -0.5
475,881 - EX31_RS02185 0.44 -2.4
475,881 - EX31_RS02185 0.44 +0.7
475,883 + EX31_RS02185 0.44 -0.3
475,884 - EX31_RS02185 0.44 +2.7
475,948 - EX31_RS02185 0.47 +1.0
475,948 - EX31_RS02185 0.47 +1.0
476,025 + EX31_RS02185 0.51 +0.7
476,026 - EX31_RS02185 0.51 -1.3
476,070 + EX31_RS02185 0.53 -1.7
476,070 + EX31_RS02185 0.53 +0.3
476,071 - EX31_RS02185 0.54 -1.9
476,071 - EX31_RS02185 0.54 -2.2
476,071 - EX31_RS02185 0.54 -0.2
476,071 - EX31_RS02185 0.54 -0.4
476,071 - EX31_RS02185 0.54 -0.3
476,071 - EX31_RS02185 0.54 +2.5
476,214 - EX31_RS02185 0.61 -2.1
476,286 - EX31_RS02185 0.64 +0.2
476,324 + EX31_RS02185 0.66 -0.9
476,324 + EX31_RS02185 0.66 -0.9
476,325 - EX31_RS02185 0.66 +0.7
476,481 + EX31_RS02185 0.74 -0.1
476,569 - EX31_RS02185 0.78 +1.7
476,611 + EX31_RS02185 0.80 +0.3
476,612 - EX31_RS02185 0.80 -0.3
476,675 + EX31_RS02185 0.83 +1.9
476,675 + EX31_RS02185 0.83 +0.7
476,676 - EX31_RS02185 0.83 +0.2
476,676 - EX31_RS02185 0.83 -0.9
476,676 - EX31_RS02185 0.83 +0.3
476,676 - EX31_RS02185 0.83 +3.5
476,676 - EX31_RS02185 0.83 -0.6
476,676 - EX31_RS02185 0.83 +0.0
476,680 - EX31_RS02185 0.83 -2.1
476,680 - EX31_RS02185 0.83 -1.4
476,733 - EX31_RS02185 0.86 +1.9
476,764 - EX31_RS02185 0.88 -0.3
476,764 - EX31_RS02185 0.88 +1.3
476,765 + EX31_RS02185 0.88 +2.3
476,766 - EX31_RS02185 0.88 -1.0
476,788 - EX31_RS02185 0.89 -0.1
477,032 + +1.3
477,033 - +0.2
477,033 - -0.9
477,110 + -0.8
477,111 - +0.7
477,118 + -1.1
477,119 - -0.1
477,119 - +0.1
477,119 - +0.1
477,344 - EX31_RS02190 0.24 +1.2
477,403 + EX31_RS02190 0.28 -1.0
477,404 - EX31_RS02190 0.28 +0.5
477,599 + EX31_RS02190 0.42 -1.1
477,599 + EX31_RS02190 0.42 +1.9
477,599 + EX31_RS02190 0.42 +0.1
477,600 - EX31_RS02190 0.42 -0.1
477,600 - EX31_RS02190 0.42 -0.8
477,604 + EX31_RS02190 0.43 -0.4
477,604 + EX31_RS02190 0.43 -0.9
477,604 + EX31_RS02190 0.43 -0.6
477,622 + EX31_RS02190 0.44 -0.4
477,625 + EX31_RS02190 0.44 -1.0
477,625 + EX31_RS02190 0.44 -0.3
477,625 + EX31_RS02190 0.44 -1.3
477,626 - EX31_RS02190 0.44 +0.2
477,626 - EX31_RS02190 0.44 +0.1
477,626 - EX31_RS02190 0.44 +1.5
477,634 + EX31_RS02190 0.45 -0.3
477,635 - EX31_RS02190 0.45 +1.9
477,635 - EX31_RS02190 0.45 +2.5
477,635 - EX31_RS02190 0.45 -2.6
477,635 - EX31_RS02190 0.45 -1.6
477,637 + EX31_RS02190 0.45 +0.5
477,638 - EX31_RS02190 0.45 -0.3
477,724 - EX31_RS02190 0.51 -0.7
477,724 - EX31_RS02190 0.51 +1.9
477,930 - EX31_RS02190 0.66 -0.0
477,962 + EX31_RS02190 0.69 +0.6
477,963 - EX31_RS02190 0.69 -0.6
477,972 - EX31_RS02190 0.69 -0.0
477,983 + EX31_RS02190 0.70 +1.2
477,983 + EX31_RS02190 0.70 -0.8
478,017 - EX31_RS02190 0.73 -1.6

Or see this region's nucleotide sequence