Experiment: Casamino Acids (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22940 and CA265_RS22945 are separated by 313 nucleotides CA265_RS22945 and CA265_RS22950 are separated by 108 nucleotides CA265_RS22950 and CA265_RS22955 are separated by 59 nucleotides
CA265_RS22940: CA265_RS22940 - hypothetical protein, at 5,616,145 to 5,617,119
_RS22940
CA265_RS22945: CA265_RS22945 - hypothetical protein, at 5,617,433 to 5,617,801
_RS22945
CA265_RS22950: CA265_RS22950 - hypothetical protein, at 5,617,910 to 5,618,260
_RS22950
CA265_RS22955: CA265_RS22955 - twin-arginine translocation pathway signal, at 5,618,320 to 5,619,519
_RS22955
Position (kb) 5617
5618
5619 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5616.939 kb on + strand, within CA265_RS22940 at 5616.939 kb on + strand, within CA265_RS22940 at 5616.940 kb on - strand, within CA265_RS22940 at 5616.977 kb on - strand, within CA265_RS22940 at 5617.066 kb on - strand at 5617.069 kb on + strand at 5617.069 kb on + strand at 5617.103 kb on + strand at 5617.185 kb on + strand at 5617.217 kb on - strand at 5617.332 kb on + strand at 5617.332 kb on + strand at 5617.333 kb on - strand at 5617.359 kb on + strand at 5617.418 kb on + strand at 5617.420 kb on + strand at 5617.421 kb on - strand at 5617.421 kb on - strand at 5617.627 kb on + strand, within CA265_RS22945 at 5617.662 kb on - strand, within CA265_RS22945 at 5617.740 kb on + strand, within CA265_RS22945 at 5617.741 kb on - strand, within CA265_RS22945 at 5617.741 kb on - strand, within CA265_RS22945 at 5617.741 kb on - strand, within CA265_RS22945 at 5617.760 kb on - strand, within CA265_RS22945 at 5617.863 kb on + strand at 5617.889 kb on + strand at 5617.921 kb on - strand at 5618.016 kb on - strand, within CA265_RS22950 at 5618.051 kb on - strand, within CA265_RS22950 at 5618.068 kb on - strand, within CA265_RS22950 at 5618.198 kb on - strand, within CA265_RS22950 at 5618.201 kb on + strand, within CA265_RS22950 at 5618.202 kb on - strand, within CA265_RS22950 at 5618.240 kb on + strand at 5618.258 kb on + strand at 5618.337 kb on + strand at 5618.385 kb on + strand at 5618.390 kb on - strand at 5618.432 kb on - strand at 5618.455 kb on + strand, within CA265_RS22955 at 5618.514 kb on + strand, within CA265_RS22955 at 5618.560 kb on + strand, within CA265_RS22955 at 5618.599 kb on - strand, within CA265_RS22955 at 5618.657 kb on + strand, within CA265_RS22955 at 5618.726 kb on + strand, within CA265_RS22955 at 5618.727 kb on - strand, within CA265_RS22955 at 5618.727 kb on - strand, within CA265_RS22955 at 5618.729 kb on + strand, within CA265_RS22955 at 5618.804 kb on + strand, within CA265_RS22955 at 5618.805 kb on - strand, within CA265_RS22955 at 5618.815 kb on - strand, within CA265_RS22955 at 5618.835 kb on + strand, within CA265_RS22955 at 5618.835 kb on + strand, within CA265_RS22955 at 5618.882 kb on + strand, within CA265_RS22955 at 5618.882 kb on + strand, within CA265_RS22955 at 5618.885 kb on - strand, within CA265_RS22955 at 5618.885 kb on - strand, within CA265_RS22955 at 5618.888 kb on + strand, within CA265_RS22955 at 5618.889 kb on - strand, within CA265_RS22955 at 5618.889 kb on - strand, within CA265_RS22955 at 5618.898 kb on + strand, within CA265_RS22955 at 5618.899 kb on - strand, within CA265_RS22955 at 5618.959 kb on - strand, within CA265_RS22955 at 5619.054 kb on + strand, within CA265_RS22955 at 5619.150 kb on + strand, within CA265_RS22955 at 5619.151 kb on - strand, within CA265_RS22955 at 5619.164 kb on - strand, within CA265_RS22955 at 5619.227 kb on + strand, within CA265_RS22955
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino Acids (N) remove 5,616,939 + CA265_RS22940 0.81 +0.7 5,616,939 + CA265_RS22940 0.81 -0.1 5,616,940 - CA265_RS22940 0.82 -0.0 5,616,977 - CA265_RS22940 0.85 +1.0 5,617,066 - -0.1 5,617,069 + -0.3 5,617,069 + +0.2 5,617,103 + +2.4 5,617,185 + +0.5 5,617,217 - +0.7 5,617,332 + +0.1 5,617,332 + +0.6 5,617,333 - +0.3 5,617,359 + +0.5 5,617,418 + +1.0 5,617,420 + -0.1 5,617,421 - +0.5 5,617,421 - +0.1 5,617,627 + CA265_RS22945 0.53 +2.8 5,617,662 - CA265_RS22945 0.62 -0.5 5,617,740 + CA265_RS22945 0.83 +0.9 5,617,741 - CA265_RS22945 0.83 -0.4 5,617,741 - CA265_RS22945 0.83 -1.6 5,617,741 - CA265_RS22945 0.83 +0.0 5,617,760 - CA265_RS22945 0.89 +0.4 5,617,863 + +0.8 5,617,889 + +0.6 5,617,921 - -0.7 5,618,016 - CA265_RS22950 0.30 -2.9 5,618,051 - CA265_RS22950 0.40 -2.8 5,618,068 - CA265_RS22950 0.45 -0.8 5,618,198 - CA265_RS22950 0.82 +1.0 5,618,201 + CA265_RS22950 0.83 +0.2 5,618,202 - CA265_RS22950 0.83 -2.3 5,618,240 + -0.2 5,618,258 + -0.3 5,618,337 + -0.8 5,618,385 + -0.9 5,618,390 - -0.2 5,618,432 - +0.5 5,618,455 + CA265_RS22955 0.11 +0.4 5,618,514 + CA265_RS22955 0.16 +0.0 5,618,560 + CA265_RS22955 0.20 -1.2 5,618,599 - CA265_RS22955 0.23 -1.6 5,618,657 + CA265_RS22955 0.28 +0.0 5,618,726 + CA265_RS22955 0.34 -0.8 5,618,727 - CA265_RS22955 0.34 -1.1 5,618,727 - CA265_RS22955 0.34 +1.0 5,618,729 + CA265_RS22955 0.34 +1.1 5,618,804 + CA265_RS22955 0.40 +0.8 5,618,805 - CA265_RS22955 0.40 -0.5 5,618,815 - CA265_RS22955 0.41 -0.3 5,618,835 + CA265_RS22955 0.43 -0.5 5,618,835 + CA265_RS22955 0.43 +0.3 5,618,882 + CA265_RS22955 0.47 -0.1 5,618,882 + CA265_RS22955 0.47 -0.7 5,618,885 - CA265_RS22955 0.47 -0.9 5,618,885 - CA265_RS22955 0.47 -1.1 5,618,888 + CA265_RS22955 0.47 +0.0 5,618,889 - CA265_RS22955 0.47 -1.2 5,618,889 - CA265_RS22955 0.47 -0.5 5,618,898 + CA265_RS22955 0.48 +1.0 5,618,899 - CA265_RS22955 0.48 +0.5 5,618,959 - CA265_RS22955 0.53 -0.1 5,619,054 + CA265_RS22955 0.61 +0.3 5,619,150 + CA265_RS22955 0.69 -1.1 5,619,151 - CA265_RS22955 0.69 +0.3 5,619,164 - CA265_RS22955 0.70 -2.5 5,619,227 + CA265_RS22955 0.76 +0.4
Or see this region's nucleotide sequence