Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS14935

Experiment: Casamino Acids (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino Acids (N)
3,764,735	+		CA265_RS14925	0.82	-0.6
3,764,736	-		CA265_RS14925	0.83	-1.2
3,764,778	-				-0.7
3,764,783	+				+0.0
3,764,789	-				-0.4
3,764,859	+				-0.8
3,764,887	-				-1.1
3,765,102	+		CA265_RS14930	0.28	-1.7
3,765,213	+		CA265_RS14930	0.44	+0.1
3,765,234	+		CA265_RS14930	0.46	-0.1
3,765,258	+		CA265_RS14930	0.50	-0.5
3,765,258	+		CA265_RS14930	0.50	-0.1
3,765,259	-		CA265_RS14930	0.50	-0.7
3,765,303	+		CA265_RS14930	0.56	-0.2
3,765,308	-		CA265_RS14930	0.56	+0.2
3,765,494	+		CA265_RS14930	0.82	+1.9
3,765,494	+		CA265_RS14930	0.82	-0.1
3,765,543	+		CA265_RS14930	0.88	+0.2
3,765,586	+				+0.4
3,765,599	-				-3.3
3,765,632	+				+0.4
3,765,654	-				-0.3
3,765,654	-				-0.2
3,765,658	+				-0.7
3,765,678	-				+1.3
3,765,693	+				+0.5
3,765,699	+				+1.3
3,765,747	+				+1.3
3,765,748	-				+1.4
3,765,803	+				+1.0
3,765,804	-				+1.9
3,765,810	-				+1.8
3,765,813	-				+2.8
3,765,813	-				+1.8
3,765,936	+				+1.5
3,766,071	-		CA265_RS14935	0.15	+2.4
3,766,071	-		CA265_RS14935	0.15	+2.0
3,766,071	-		CA265_RS14935	0.15	+3.4
3,766,103	+		CA265_RS14935	0.16	+1.1
3,766,136	+		CA265_RS14935	0.17	+1.2
3,766,136	+		CA265_RS14935	0.17	+1.5
3,766,173	+		CA265_RS14935	0.19	+1.8
3,766,236	+		CA265_RS14935	0.21	+1.9
3,766,248	+		CA265_RS14935	0.21	+1.7
3,766,287	-		CA265_RS14935	0.23	+2.0
3,766,288	+		CA265_RS14935	0.23	+1.3
3,766,292	+		CA265_RS14935	0.23	+2.7
3,766,310	-		CA265_RS14935	0.24	+1.1
3,766,341	-		CA265_RS14935	0.25	+1.4
3,766,376	+		CA265_RS14935	0.26	+1.5
3,766,407	-		CA265_RS14935	0.27	+2.5
3,766,409	+		CA265_RS14935	0.27	+2.0
3,766,409	+		CA265_RS14935	0.27	+1.2
3,766,441	+		CA265_RS14935	0.29	+1.1
3,766,441	+		CA265_RS14935	0.29	+2.2
3,766,458	-		CA265_RS14935	0.29	+1.9
3,766,506	+		CA265_RS14935	0.31	+2.1
3,766,514	+		CA265_RS14935	0.31	+1.6
3,766,515	-		CA265_RS14935	0.31	+1.9
3,766,523	+		CA265_RS14935	0.32	+1.4
3,766,523	+		CA265_RS14935	0.32	+1.1
3,766,541	+		CA265_RS14935	0.32	+1.7
3,766,783	+		CA265_RS14935	0.41	+1.1
3,766,784	-		CA265_RS14935	0.41	+1.9
3,766,842	-		CA265_RS14935	0.43	+2.1
3,766,892	+		CA265_RS14935	0.45	+2.2
3,766,899	-		CA265_RS14935	0.45	+2.0
3,766,899	-		CA265_RS14935	0.45	+0.7
3,766,899	-		CA265_RS14935	0.45	+1.5
3,766,899	-		CA265_RS14935	0.45	+1.8
3,766,949	+		CA265_RS14935	0.47	+2.0
3,766,980	-		CA265_RS14935	0.48	+1.8
3,766,980	-		CA265_RS14935	0.48	+1.6
3,767,016	+		CA265_RS14935	0.50	+2.0
3,767,034	-		CA265_RS14935	0.51	+2.1
3,767,036	-		CA265_RS14935	0.51	+1.1
3,767,036	-		CA265_RS14935	0.51	+2.1
3,767,039	-		CA265_RS14935	0.51	+1.6
3,767,102	+		CA265_RS14935	0.53	+1.6
3,767,117	+		CA265_RS14935	0.54	+1.7
3,767,121	-		CA265_RS14935	0.54	+2.0
3,767,124	-		CA265_RS14935	0.54	+1.5
3,767,163	-		CA265_RS14935	0.55	+1.0
3,767,163	-		CA265_RS14935	0.55	+1.5
3,767,210	+		CA265_RS14935	0.57	+1.3
3,767,211	-		CA265_RS14935	0.57	+2.0
3,767,279	+		CA265_RS14935	0.60	+1.2
3,767,327	+		CA265_RS14935	0.61	+1.6
3,767,328	-		CA265_RS14935	0.61	+1.1
3,767,343	-		CA265_RS14935	0.62	+1.9
3,767,404	+		CA265_RS14935	0.64	+0.3
3,767,409	-		CA265_RS14935	0.64	+1.1
3,767,489	+		CA265_RS14935	0.67	+1.6
3,767,585	+		CA265_RS14935	0.71	+1.6
3,767,585	+		CA265_RS14935	0.71	+2.3
3,767,585	+		CA265_RS14935	0.71	+2.2
3,767,586	-		CA265_RS14935	0.71	+1.8
3,767,607	-		CA265_RS14935	0.72	+1.2
3,767,607	-		CA265_RS14935	0.72	+0.5
3,767,621	+		CA265_RS14935	0.72	+1.7
3,767,634	-		CA265_RS14935	0.73	+1.0
3,767,657	+		CA265_RS14935	0.74	-0.7
3,767,703	-		CA265_RS14935	0.75	+1.9
3,767,707	-		CA265_RS14935	0.75	+0.4
3,767,727	-		CA265_RS14935	0.76	+1.8
3,767,769	-		CA265_RS14935	0.78	+1.7
3,767,771	+		CA265_RS14935	0.78	+1.7
3,767,782	-		CA265_RS14935	0.78	+0.6
3,767,794	+		CA265_RS14935	0.79	+1.5
3,767,902	-		CA265_RS14935	0.83	+1.2
3,767,961	-		CA265_RS14935	0.85	+1.6
3,767,973	-		CA265_RS14935	0.85	+2.1
3,767,997	+		CA265_RS14935	0.86	+1.6
3,767,998	-		CA265_RS14935	0.86	+1.8
3,767,998	-		CA265_RS14935	0.86	+1.5
3,767,998	-		CA265_RS14935	0.86	+1.9
3,768,050	+		CA265_RS14935	0.88	+1.8
3,768,060	+		CA265_RS14935	0.89	+1.4
3,768,115	+				+1.3
3,768,140	-				+1.7
3,768,140	-				+1.9
3,768,206	+				+1.3
3,768,234	+				+1.5
3,768,235	-				+1.0
3,768,235	-				+1.8
3,768,280	-				+2.3
3,768,330	-				+1.4
3,768,475	+		CA265_RS14940	0.53	+1.3
3,768,495	+		CA265_RS14940	0.61	+0.8
3,768,496	-		CA265_RS14940	0.62	-0.3
3,768,522	+		CA265_RS14940	0.73	+0.6
3,768,522	+		CA265_RS14940	0.73	+0.3
3,768,523	-		CA265_RS14940	0.73	-1.4
3,768,525	+		CA265_RS14940	0.74	+1.4
3,768,526	-		CA265_RS14940	0.74	-0.9
3,768,565	+				+2.0
3,768,570	+				+2.0
3,768,570	+				+1.2
3,768,684	+				+0.9
3,768,703	+				+1.4
3,768,704	-				-3.0
3,768,712	+				+1.6
3,768,745	+				+1.3
3,768,832	-				-1.0
3,768,894	+				+0.0
3,768,894	+				+0.0
3,768,938	+				+1.0
3,768,940	+				+0.7
3,768,988	-		CA265_RS14945	0.11	-0.6
3,769,014	+		CA265_RS14945	0.13	+0.9
3,769,060	+		CA265_RS14945	0.17	+0.9
3,769,062	+		CA265_RS14945	0.17	+0.9
3,769,063	-		CA265_RS14945	0.17	-2.4
3,769,143	-		CA265_RS14945	0.23	-2.0
3,769,143	-		CA265_RS14945	0.23	-1.2
3,769,145	-		CA265_RS14945	0.23	-1.1
3,769,154	-		CA265_RS14945	0.24	-1.0
3,769,220	+		CA265_RS14945	0.29	+1.5
3,769,222	+		CA265_RS14945	0.29	+0.9
3,769,222	+		CA265_RS14945	0.29	-0.2
3,769,254	+		CA265_RS14945	0.31	+0.1
3,769,254	+		CA265_RS14945	0.31	+0.3
3,769,254	+		CA265_RS14945	0.31	+0.7
3,769,255	-		CA265_RS14945	0.32	-1.5
3,769,255	-		CA265_RS14945	0.32	-1.1
3,769,260	-		CA265_RS14945	0.32	-0.9
3,769,345	-		CA265_RS14945	0.38	-0.5