Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19115

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19110 and BPHYT_RS19115 are separated by 11 nucleotidesBPHYT_RS19115 and BPHYT_RS19120 are separated by 10 nucleotides BPHYT_RS19110: BPHYT_RS19110 - 3-oxoacyl-ACP synthase, at 4,289,174 to 4,290,214 _RS19110 BPHYT_RS19115: BPHYT_RS19115 - acyl carrier protein, at 4,290,226 to 4,290,453 _RS19115 BPHYT_RS19120: BPHYT_RS19120 - 3-oxoacyl-ACP synthase, at 4,290,464 to 4,291,528 _RS19120 Position (kb) 4290 4291Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4289.456 kb on + strand, within BPHYT_RS19110at 4289.456 kb on + strand, within BPHYT_RS19110at 4289.457 kb on - strand, within BPHYT_RS19110at 4289.550 kb on - strand, within BPHYT_RS19110at 4289.550 kb on - strand, within BPHYT_RS19110at 4289.550 kb on - strand, within BPHYT_RS19110at 4289.631 kb on - strand, within BPHYT_RS19110at 4289.639 kb on + strand, within BPHYT_RS19110at 4289.876 kb on + strand, within BPHYT_RS19110at 4289.876 kb on + strand, within BPHYT_RS19110at 4289.876 kb on + strand, within BPHYT_RS19110at 4289.876 kb on + strand, within BPHYT_RS19110at 4289.876 kb on + strand, within BPHYT_RS19110at 4289.877 kb on - strand, within BPHYT_RS19110at 4290.212 kb on + strandat 4290.283 kb on - strand, within BPHYT_RS19115at 4290.283 kb on - strand, within BPHYT_RS19115at 4290.499 kb on - strandat 4291.106 kb on + strand, within BPHYT_RS19120at 4291.254 kb on - strand, within BPHYT_RS19120at 4291.355 kb on + strand, within BPHYT_RS19120at 4291.363 kb on + strand, within BPHYT_RS19120at 4291.363 kb on + strand, within BPHYT_RS19120

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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4,289,456 + BPHYT_RS19110 0.27 -0.7
4,289,456 + BPHYT_RS19110 0.27 -2.3
4,289,457 - BPHYT_RS19110 0.27 -4.5
4,289,550 - BPHYT_RS19110 0.36 -0.8
4,289,550 - BPHYT_RS19110 0.36 -1.6
4,289,550 - BPHYT_RS19110 0.36 -2.1
4,289,631 - BPHYT_RS19110 0.44 -2.6
4,289,639 + BPHYT_RS19110 0.45 -2.2
4,289,876 + BPHYT_RS19110 0.67 -0.1
4,289,876 + BPHYT_RS19110 0.67 -0.8
4,289,876 + BPHYT_RS19110 0.67 -0.7
4,289,876 + BPHYT_RS19110 0.67 -0.9
4,289,876 + BPHYT_RS19110 0.67 -1.1
4,289,877 - BPHYT_RS19110 0.68 -2.4
4,290,212 + +1.3
4,290,283 - BPHYT_RS19115 0.25 -2.9
4,290,283 - BPHYT_RS19115 0.25 -2.5
4,290,499 - -3.5
4,291,106 + BPHYT_RS19120 0.60 -2.1
4,291,254 - BPHYT_RS19120 0.74 -2.2
4,291,355 + BPHYT_RS19120 0.84 -1.2
4,291,363 + BPHYT_RS19120 0.84 -4.1
4,291,363 + BPHYT_RS19120 0.84 -2.8

Or see this region's nucleotide sequence