Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18985

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS18975 and BPHYT_RS18980 overlap by 4 nucleotidesBPHYT_RS18980 and BPHYT_RS18985 overlap by 4 nucleotidesBPHYT_RS18985 and BPHYT_RS18990 are separated by 16 nucleotides BPHYT_RS18975: BPHYT_RS18975 - chemotaxis protein CheD, at 4,261,456 to 4,262,271 _RS18975 BPHYT_RS18980: BPHYT_RS18980 - chemotaxis protein CheR, at 4,262,268 to 4,263,224 _RS18980 BPHYT_RS18985: BPHYT_RS18985 - hypothetical protein, at 4,263,221 to 4,263,412 _RS18985 BPHYT_RS18990: BPHYT_RS18990 - chemotaxis protein, at 4,263,429 to 4,265,282 _RS18990 Position (kb) 4263 4264Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4262.237 kb on + strandat 4262.237 kb on + strandat 4262.238 kb on - strandat 4262.238 kb on - strandat 4262.271 kb on + strandat 4262.271 kb on + strandat 4262.272 kb on - strandat 4262.365 kb on + strand, within BPHYT_RS18980at 4262.366 kb on - strand, within BPHYT_RS18980at 4262.404 kb on + strand, within BPHYT_RS18980at 4262.405 kb on - strand, within BPHYT_RS18980at 4262.504 kb on - strand, within BPHYT_RS18980at 4262.704 kb on + strand, within BPHYT_RS18980at 4262.705 kb on - strand, within BPHYT_RS18980at 4262.705 kb on - strand, within BPHYT_RS18980at 4263.058 kb on + strand, within BPHYT_RS18980at 4263.059 kb on - strand, within BPHYT_RS18980at 4263.243 kb on + strand, within BPHYT_RS18985at 4263.243 kb on + strand, within BPHYT_RS18985at 4263.283 kb on + strand, within BPHYT_RS18985at 4263.284 kb on - strand, within BPHYT_RS18985at 4263.430 kb on + strandat 4263.431 kb on - strandat 4263.590 kb on + strandat 4263.717 kb on - strand, within BPHYT_RS18990at 4264.157 kb on + strand, within BPHYT_RS18990at 4264.157 kb on + strand, within BPHYT_RS18990

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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4,262,237 + -0.7
4,262,237 + -3.5
4,262,238 - -1.4
4,262,238 - -1.3
4,262,271 + -1.3
4,262,271 + -0.8
4,262,272 - -2.5
4,262,365 + BPHYT_RS18980 0.10 -2.0
4,262,366 - BPHYT_RS18980 0.10 -1.5
4,262,404 + BPHYT_RS18980 0.14 -1.3
4,262,405 - BPHYT_RS18980 0.14 +0.4
4,262,504 - BPHYT_RS18980 0.25 +2.0
4,262,704 + BPHYT_RS18980 0.46 -3.0
4,262,705 - BPHYT_RS18980 0.46 -0.6
4,262,705 - BPHYT_RS18980 0.46 -1.1
4,263,058 + BPHYT_RS18980 0.83 -1.5
4,263,059 - BPHYT_RS18980 0.83 -1.3
4,263,243 + BPHYT_RS18985 0.11 -0.5
4,263,243 + BPHYT_RS18985 0.11 -2.4
4,263,283 + BPHYT_RS18985 0.32 -2.0
4,263,284 - BPHYT_RS18985 0.33 +0.4
4,263,430 + -2.4
4,263,431 - +0.8
4,263,590 + -3.0
4,263,717 - BPHYT_RS18990 0.16 -1.3
4,264,157 + BPHYT_RS18990 0.39 -1.0
4,264,157 + BPHYT_RS18990 0.39 -3.7

Or see this region's nucleotide sequence