Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18495

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS18490 and BPHYT_RS18495 are separated by 192 nucleotidesBPHYT_RS18495 and BPHYT_RS18500 are separated by 84 nucleotides BPHYT_RS18490: BPHYT_RS18490 - LysR family transcriptional regulator, at 4,159,052 to 4,159,939 _RS18490 BPHYT_RS18495: BPHYT_RS18495 - D-aminoacylase, at 4,160,132 to 4,161,592 _RS18495 BPHYT_RS18500: BPHYT_RS18500 - hypothetical protein, at 4,161,677 to 4,162,588 _RS18500 Position (kb) 4160 4161 4162Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4159.230 kb on - strand, within BPHYT_RS18490at 4159.260 kb on + strand, within BPHYT_RS18490at 4159.260 kb on + strand, within BPHYT_RS18490at 4159.260 kb on + strand, within BPHYT_RS18490at 4159.260 kb on + strand, within BPHYT_RS18490at 4159.260 kb on + strand, within BPHYT_RS18490at 4159.261 kb on - strand, within BPHYT_RS18490at 4159.264 kb on - strand, within BPHYT_RS18490at 4159.289 kb on + strand, within BPHYT_RS18490at 4159.326 kb on - strand, within BPHYT_RS18490at 4159.474 kb on + strand, within BPHYT_RS18490at 4159.474 kb on + strand, within BPHYT_RS18490at 4159.475 kb on - strand, within BPHYT_RS18490at 4159.529 kb on + strand, within BPHYT_RS18490at 4159.529 kb on + strand, within BPHYT_RS18490at 4159.530 kb on - strand, within BPHYT_RS18490at 4159.530 kb on - strand, within BPHYT_RS18490at 4159.861 kb on + strandat 4159.904 kb on + strandat 4159.904 kb on + strandat 4159.905 kb on - strandat 4159.948 kb on + strandat 4159.949 kb on - strandat 4159.949 kb on - strandat 4160.019 kb on + strandat 4160.019 kb on + strandat 4160.019 kb on + strandat 4160.019 kb on + strandat 4160.020 kb on - strandat 4160.020 kb on - strandat 4160.020 kb on - strandat 4160.022 kb on + strandat 4160.149 kb on + strandat 4160.149 kb on + strandat 4160.197 kb on + strandat 4160.197 kb on + strandat 4160.197 kb on + strandat 4160.197 kb on + strandat 4160.197 kb on + strandat 4160.198 kb on - strandat 4160.198 kb on - strandat 4160.220 kb on + strandat 4160.220 kb on + strandat 4160.220 kb on + strandat 4160.220 kb on + strandat 4160.227 kb on + strandat 4160.256 kb on + strandat 4160.256 kb on + strandat 4160.257 kb on - strandat 4160.257 kb on - strandat 4160.553 kb on + strand, within BPHYT_RS18495at 4160.554 kb on - strand, within BPHYT_RS18495at 4160.554 kb on - strand, within BPHYT_RS18495at 4160.597 kb on - strand, within BPHYT_RS18495at 4160.597 kb on - strand, within BPHYT_RS18495at 4160.730 kb on + strand, within BPHYT_RS18495at 4160.731 kb on - strand, within BPHYT_RS18495at 4160.750 kb on + strand, within BPHYT_RS18495at 4160.859 kb on - strand, within BPHYT_RS18495at 4160.906 kb on - strand, within BPHYT_RS18495at 4160.923 kb on + strand, within BPHYT_RS18495at 4160.923 kb on + strand, within BPHYT_RS18495at 4160.923 kb on + strand, within BPHYT_RS18495at 4160.924 kb on - strand, within BPHYT_RS18495at 4160.935 kb on - strand, within BPHYT_RS18495at 4160.986 kb on + strand, within BPHYT_RS18495at 4160.987 kb on - strand, within BPHYT_RS18495at 4161.146 kb on + strand, within BPHYT_RS18495at 4161.147 kb on - strand, within BPHYT_RS18495at 4161.151 kb on + strand, within BPHYT_RS18495at 4161.151 kb on + strand, within BPHYT_RS18495at 4161.152 kb on - strand, within BPHYT_RS18495at 4161.152 kb on - strand, within BPHYT_RS18495at 4161.152 kb on - strand, within BPHYT_RS18495at 4161.198 kb on + strand, within BPHYT_RS18495at 4161.198 kb on + strand, within BPHYT_RS18495at 4161.199 kb on - strand, within BPHYT_RS18495at 4161.319 kb on + strand, within BPHYT_RS18495at 4161.320 kb on - strand, within BPHYT_RS18495at 4161.349 kb on + strand, within BPHYT_RS18495at 4161.349 kb on + strand, within BPHYT_RS18495at 4161.350 kb on - strand, within BPHYT_RS18495at 4161.394 kb on + strand, within BPHYT_RS18495at 4161.394 kb on + strand, within BPHYT_RS18495at 4161.395 kb on - strand, within BPHYT_RS18495at 4161.420 kb on - strand, within BPHYT_RS18495at 4161.420 kb on - strand, within BPHYT_RS18495at 4161.420 kb on - strand, within BPHYT_RS18495at 4161.420 kb on - strand, within BPHYT_RS18495at 4161.420 kb on - strand, within BPHYT_RS18495at 4161.422 kb on + strand, within BPHYT_RS18495at 4161.422 kb on + strand, within BPHYT_RS18495at 4161.422 kb on + strand, within BPHYT_RS18495at 4161.422 kb on + strand, within BPHYT_RS18495at 4161.423 kb on - strand, within BPHYT_RS18495at 4161.423 kb on - strand, within BPHYT_RS18495at 4161.423 kb on - strand, within BPHYT_RS18495at 4161.423 kb on - strand, within BPHYT_RS18495at 4161.487 kb on + strandat 4161.519 kb on + strandat 4161.520 kb on - strandat 4161.520 kb on - strandat 4161.679 kb on - strandat 4161.695 kb on - strandat 4161.697 kb on - strandat 4161.745 kb on + strandat 4161.745 kb on + strandat 4161.745 kb on + strandat 4161.746 kb on - strandat 4161.746 kb on - strandat 4161.746 kb on - strandat 4161.746 kb on - strandat 4161.746 kb on - strandat 4161.746 kb on - strandat 4161.747 kb on + strandat 4161.747 kb on + strandat 4161.748 kb on - strandat 4161.748 kb on - strandat 4161.749 kb on + strandat 4161.749 kb on + strandat 4161.749 kb on + strandat 4161.749 kb on + strandat 4161.749 kb on + strandat 4161.750 kb on - strandat 4161.750 kb on - strandat 4161.750 kb on - strandat 4162.018 kb on + strand, within BPHYT_RS18500at 4162.100 kb on - strand, within BPHYT_RS18500at 4162.100 kb on - strand, within BPHYT_RS18500at 4162.149 kb on + strand, within BPHYT_RS18500at 4162.149 kb on + strand, within BPHYT_RS18500at 4162.149 kb on + strand, within BPHYT_RS18500at 4162.150 kb on - strand, within BPHYT_RS18500at 4162.150 kb on - strand, within BPHYT_RS18500at 4162.327 kb on - strand, within BPHYT_RS18500at 4162.359 kb on - strand, within BPHYT_RS18500at 4162.389 kb on + strand, within BPHYT_RS18500at 4162.390 kb on - strand, within BPHYT_RS18500at 4162.458 kb on - strand, within BPHYT_RS18500at 4162.458 kb on - strand, within BPHYT_RS18500at 4162.465 kb on + strand, within BPHYT_RS18500at 4162.466 kb on - strand, within BPHYT_RS18500at 4162.466 kb on - strand, within BPHYT_RS18500at 4162.534 kb on + strandat 4162.535 kb on - strandat 4162.577 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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4,159,230 - BPHYT_RS18490 0.20 -0.5
4,159,260 + BPHYT_RS18490 0.23 -1.3
4,159,260 + BPHYT_RS18490 0.23 +0.5
4,159,260 + BPHYT_RS18490 0.23 +1.5
4,159,260 + BPHYT_RS18490 0.23 -0.1
4,159,260 + BPHYT_RS18490 0.23 +0.9
4,159,261 - BPHYT_RS18490 0.24 +0.9
4,159,264 - BPHYT_RS18490 0.24 +0.1
4,159,289 + BPHYT_RS18490 0.27 +0.1
4,159,326 - BPHYT_RS18490 0.31 +1.9
4,159,474 + BPHYT_RS18490 0.48 +0.4
4,159,474 + BPHYT_RS18490 0.48 +0.3
4,159,475 - BPHYT_RS18490 0.48 +0.7
4,159,529 + BPHYT_RS18490 0.54 +0.0
4,159,529 + BPHYT_RS18490 0.54 +1.9
4,159,530 - BPHYT_RS18490 0.54 +1.0
4,159,530 - BPHYT_RS18490 0.54 +0.2
4,159,861 + -0.6
4,159,904 + -2.2
4,159,904 + +0.7
4,159,905 - +0.3
4,159,948 + +0.1
4,159,949 - +0.6
4,159,949 - +0.4
4,160,019 + +0.3
4,160,019 + +0.7
4,160,019 + -0.5
4,160,019 + +0.0
4,160,020 - -0.5
4,160,020 - -2.0
4,160,020 - -0.2
4,160,022 + -0.1
4,160,149 + +0.4
4,160,149 + -1.0
4,160,197 + -3.1
4,160,197 + +0.4
4,160,197 + -0.4
4,160,197 + +0.5
4,160,197 + +1.2
4,160,198 - -0.2
4,160,198 - +0.2
4,160,220 + -0.6
4,160,220 + +0.2
4,160,220 + -0.6
4,160,220 + +1.9
4,160,227 + -0.2
4,160,256 + +1.5
4,160,256 + +0.1
4,160,257 - -0.3
4,160,257 - +1.5
4,160,553 + BPHYT_RS18495 0.29 +1.0
4,160,554 - BPHYT_RS18495 0.29 +0.3
4,160,554 - BPHYT_RS18495 0.29 +1.7
4,160,597 - BPHYT_RS18495 0.32 -0.1
4,160,597 - BPHYT_RS18495 0.32 -1.8
4,160,730 + BPHYT_RS18495 0.41 +1.0
4,160,731 - BPHYT_RS18495 0.41 +0.6
4,160,750 + BPHYT_RS18495 0.42 -0.6
4,160,859 - BPHYT_RS18495 0.50 +0.5
4,160,906 - BPHYT_RS18495 0.53 +0.9
4,160,923 + BPHYT_RS18495 0.54 +1.2
4,160,923 + BPHYT_RS18495 0.54 -1.0
4,160,923 + BPHYT_RS18495 0.54 -0.4
4,160,924 - BPHYT_RS18495 0.54 -0.8
4,160,935 - BPHYT_RS18495 0.55 +1.4
4,160,986 + BPHYT_RS18495 0.58 +0.7
4,160,987 - BPHYT_RS18495 0.59 +1.0
4,161,146 + BPHYT_RS18495 0.69 -0.4
4,161,147 - BPHYT_RS18495 0.69 -0.1
4,161,151 + BPHYT_RS18495 0.70 +0.5
4,161,151 + BPHYT_RS18495 0.70 -0.7
4,161,152 - BPHYT_RS18495 0.70 +0.6
4,161,152 - BPHYT_RS18495 0.70 +1.3
4,161,152 - BPHYT_RS18495 0.70 +2.6
4,161,198 + BPHYT_RS18495 0.73 -0.0
4,161,198 + BPHYT_RS18495 0.73 +1.1
4,161,199 - BPHYT_RS18495 0.73 +1.2
4,161,319 + BPHYT_RS18495 0.81 +0.9
4,161,320 - BPHYT_RS18495 0.81 -0.1
4,161,349 + BPHYT_RS18495 0.83 -0.3
4,161,349 + BPHYT_RS18495 0.83 +1.1
4,161,350 - BPHYT_RS18495 0.83 -0.2
4,161,394 + BPHYT_RS18495 0.86 +1.0
4,161,394 + BPHYT_RS18495 0.86 -0.6
4,161,395 - BPHYT_RS18495 0.86 +0.6
4,161,420 - BPHYT_RS18495 0.88 -0.1
4,161,420 - BPHYT_RS18495 0.88 +0.6
4,161,420 - BPHYT_RS18495 0.88 +0.4
4,161,420 - BPHYT_RS18495 0.88 -1.2
4,161,420 - BPHYT_RS18495 0.88 -0.2
4,161,422 + BPHYT_RS18495 0.88 +0.2
4,161,422 + BPHYT_RS18495 0.88 -0.1
4,161,422 + BPHYT_RS18495 0.88 -0.1
4,161,422 + BPHYT_RS18495 0.88 -1.6
4,161,423 - BPHYT_RS18495 0.88 -0.8
4,161,423 - BPHYT_RS18495 0.88 +0.6
4,161,423 - BPHYT_RS18495 0.88 -2.0
4,161,423 - BPHYT_RS18495 0.88 +1.2
4,161,487 + -0.2
4,161,519 + +0.5
4,161,520 - -0.3
4,161,520 - +1.8
4,161,679 - +1.4
4,161,695 - -0.4
4,161,697 - -0.9
4,161,745 + -0.9
4,161,745 + +0.6
4,161,745 + -0.1
4,161,746 - -0.0
4,161,746 - +0.9
4,161,746 - -0.7
4,161,746 - +0.0
4,161,746 - +0.3
4,161,746 - +0.3
4,161,747 + +0.0
4,161,747 + -1.3
4,161,748 - +0.3
4,161,748 - +0.8
4,161,749 + -0.0
4,161,749 + +0.4
4,161,749 + +1.6
4,161,749 + -0.3
4,161,749 + +0.8
4,161,750 - -0.1
4,161,750 - +0.8
4,161,750 - +0.7
4,162,018 + BPHYT_RS18500 0.37 +0.3
4,162,100 - BPHYT_RS18500 0.46 +0.1
4,162,100 - BPHYT_RS18500 0.46 +1.0
4,162,149 + BPHYT_RS18500 0.52 +0.9
4,162,149 + BPHYT_RS18500 0.52 -0.7
4,162,149 + BPHYT_RS18500 0.52 +0.1
4,162,150 - BPHYT_RS18500 0.52 +1.0
4,162,150 - BPHYT_RS18500 0.52 +0.3
4,162,327 - BPHYT_RS18500 0.71 +0.8
4,162,359 - BPHYT_RS18500 0.75 +0.9
4,162,389 + BPHYT_RS18500 0.78 +0.6
4,162,390 - BPHYT_RS18500 0.78 +2.0
4,162,458 - BPHYT_RS18500 0.86 -0.0
4,162,458 - BPHYT_RS18500 0.86 -0.9
4,162,465 + BPHYT_RS18500 0.86 +0.3
4,162,466 - BPHYT_RS18500 0.87 -0.1
4,162,466 - BPHYT_RS18500 0.87 -0.4
4,162,534 + -1.2
4,162,535 - -0.6
4,162,577 - +0.2

Or see this region's nucleotide sequence